Wall clock time and date at job start Tue Mar 31 2020 19:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00029 * 2 1 4 4 H 1.08998 * 110.64250 * 26.85434 * 3 2 1 5 5 C 1.54331 * 110.84850 * 263.69061 * 3 2 1 6 6 N 1.47021 * 107.26526 * 219.67676 * 5 3 2 7 7 C 1.36943 * 125.64958 * 178.84865 * 6 5 3 8 8 H 1.08002 * 119.99788 * 179.68595 * 7 6 5 9 9 C 1.38811 * 119.99622 * 359.96780 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.47423 * 108.70520 * 358.58242 * 6 5 3 16 16 C 1.54910 * 104.82934 * 24.35776 * 15 6 5 17 17 H 1.09007 * 111.00696 * 81.06300 * 16 15 6 18 18 N 1.46501 * 111.00763 * 204.87761 * 16 15 6 19 19 C 1.34777 * 119.99730 * 273.54930 * 18 16 15 20 20 O 1.21280 * 120.00598 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99564 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.47211 * 60.00005 * 21 19 18 23 23 C 1.53001 * 109.46964 * 299.99970 * 21 19 18 24 24 N 1.46504 * 109.47088 * 180.02562 * 21 19 18 25 25 C 1.36342 * 125.63472 * 59.69025 * 24 21 19 26 26 C 1.50694 * 125.89292 * 359.96630 * 25 24 21 27 27 C 1.34852 * 108.21356 * 179.83324 * 25 24 21 28 28 C 1.40888 * 107.41667 * 0.42425 * 27 25 24 29 29 C 1.34848 * 107.42085 * 359.73512 * 28 27 25 30 30 C 1.50700 * 125.89054 * 180.02562 * 29 28 27 31 31 H 1.09000 * 109.46774 * 59.99903 * 1 2 3 32 32 H 1.08992 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47055 * 300.00499 * 1 2 3 34 34 H 1.09003 * 109.99500 * 100.19961 * 5 3 2 35 35 H 1.09008 * 109.77945 * 339.03003 * 5 3 2 36 36 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 37 37 H 1.09000 * 110.36923 * 143.19518 * 15 6 5 38 38 H 1.08999 * 110.37105 * 265.52427 * 15 6 5 39 39 H 0.96993 * 120.00089 * 93.54442 * 18 16 15 40 40 H 1.08998 * 109.47422 * 60.00110 * 23 21 19 41 41 H 1.09007 * 109.47265 * 180.02562 * 23 21 19 42 42 H 1.09000 * 109.47185 * 300.00051 * 23 21 19 43 43 H 1.08998 * 109.47589 * 89.99464 * 26 25 24 44 44 H 1.08998 * 109.47111 * 210.00159 * 26 25 24 45 45 H 1.09004 * 109.47041 * 329.99182 * 26 25 24 46 46 H 1.07999 * 126.28985 * 180.16021 * 27 25 24 47 47 H 1.08006 * 126.28820 * 179.73751 * 28 27 25 48 48 H 1.08997 * 109.47241 * 269.96195 * 30 29 28 49 49 H 1.08995 * 109.47269 * 29.96454 * 30 29 28 50 50 H 1.08999 * 109.47016 * 149.96087 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3785 1.7428 -1.4335 6 7 3.6686 2.4437 -1.3581 7 6 4.3543 2.9702 -2.4202 8 1 5.2963 3.4731 -2.2590 9 6 3.8355 2.8625 -3.7032 10 7 2.6874 2.2497 -3.8996 11 14 4.7669 3.5873 -5.1511 12 1 5.6908 2.5660 -5.7066 13 1 3.8030 4.0058 -6.2003 14 1 5.5475 4.7664 -4.6974 15 6 4.0989 2.4917 0.0511 16 6 3.3817 1.2958 0.7256 17 1 3.9158 0.3640 0.5390 18 7 3.2176 1.5247 2.1633 19 6 4.2052 1.1880 3.0163 20 8 5.2296 0.6950 2.5939 21 6 4.0366 1.4241 4.4952 22 1 3.1741 0.8640 4.8565 23 6 3.8193 2.9167 4.7518 24 7 5.2401 0.9778 5.2013 25 6 6.5014 1.4553 5.0014 26 6 6.8945 2.5283 4.0191 27 6 7.3361 0.8037 5.8365 28 6 6.5632 -0.1163 6.5721 29 6 5.2848 0.0121 6.1627 30 6 4.1084 -0.7755 6.6793 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6145 2.4137 -1.8264 35 1 2.4700 0.8659 -2.0746 36 1 2.3251 2.1741 -4.7962 37 1 5.1803 2.3744 0.1218 38 1 3.7873 3.4294 0.5113 39 1 2.3982 1.9187 2.5012 40 1 2.9241 3.2492 4.2264 41 1 3.6978 3.0876 5.8215 42 1 4.6818 3.4768 4.3904 43 1 6.8320 3.5036 4.5019 44 1 7.9162 2.3550 3.6811 45 1 6.2196 2.5026 3.1635 46 1 8.4018 0.9560 5.9223 47 1 6.9277 -0.7990 7.3255 48 1 3.9842 -1.6778 6.0806 49 1 4.2838 -1.0507 7.7192 50 1 3.2062 -0.1675 6.6116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082383404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:02 Heat of formation + Delta-G solvation = -20.003582 kcal Electronic energy + Delta-G solvation = -30405.362194 eV Core-core repulsion = 26433.874134 eV Total energy + Delta-G solvation = -3971.488060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.60923 -40.96432 -39.61452 -37.53200 -35.77383 -35.24462 -33.65673 -33.47192 -30.79601 -30.19604 -29.89953 -28.82877 -27.53399 -26.34340 -25.30191 -24.96234 -22.67539 -22.20419 -21.65994 -21.23756 -19.87456 -19.00940 -18.30035 -17.88972 -17.30839 -17.13231 -16.54344 -16.28673 -16.06398 -15.81537 -15.64390 -15.20540 -15.03923 -14.86786 -14.53268 -14.21496 -14.13983 -14.05099 -13.94929 -13.63223 -13.53485 -13.32946 -13.27221 -13.13518 -12.98777 -12.89713 -12.76979 -12.70170 -12.61012 -12.48243 -12.32321 -12.10298 -12.05308 -11.88323 -11.66685 -11.08108 -10.79435 -10.59706 -10.19013 -9.51239 -8.98862 -8.63332 -7.89610 -5.27597 1.18868 1.41579 1.44866 1.46903 1.55160 1.77324 2.12774 2.15611 2.44704 2.74818 3.29632 3.38404 3.48984 3.71377 3.78068 3.82024 3.88835 3.91138 4.08246 4.19002 4.33815 4.37224 4.43156 4.51523 4.57147 4.58420 4.62915 4.64780 4.69858 4.76132 4.79879 4.82387 4.88107 4.91300 4.92912 5.04045 5.11963 5.16907 5.29227 5.34444 5.40842 5.42583 5.52882 5.64153 6.11655 6.21675 6.29838 6.32572 6.38539 6.57257 7.02848 7.10645 7.67930 8.29720 9.19719 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003155 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.857765 B = 8873.060560 C =10189.119279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.078 3.922 4 H 0.102 0.898 5 C 0.174 3.826 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.948 5.948 11 Si 0.979 3.021 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.134 3.866 16 C 0.154 3.846 17 H 0.068 0.932 18 N -0.693 5.693 19 C 0.500 3.500 20 O -0.559 6.559 21 C 0.117 3.883 22 H 0.153 0.847 23 C -0.160 4.160 24 N -0.430 5.430 25 C 0.028 3.972 26 C -0.083 4.083 27 C -0.229 4.229 28 C -0.214 4.214 29 C 0.000 4.000 30 C -0.081 4.081 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.015 0.985 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.418 0.582 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.136 0.864 47 H 0.146 0.854 48 H 0.067 0.933 49 H 0.095 0.905 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -0.438 23.543 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.120 0.880 5 C 0.048 3.952 6 N -0.349 5.349 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.807 3.193 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.007 3.993 16 C 0.047 3.953 17 H 0.087 0.913 18 N -0.346 5.346 19 C 0.286 3.714 20 O -0.436 6.436 21 C 0.011 3.989 22 H 0.170 0.830 23 C -0.217 4.217 24 N -0.108 5.108 25 C -0.083 4.083 26 C -0.141 4.141 27 C -0.253 4.253 28 C -0.239 4.239 29 C -0.110 4.110 30 C -0.138 4.138 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.257 0.743 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.154 0.846 47 H 0.163 0.837 48 H 0.086 0.914 49 H 0.114 0.886 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.538 -0.831 22.866 23.327 hybrid contribution 0.290 0.388 -1.456 1.535 sum -4.249 -0.443 21.410 21.832 Atomic orbital electron populations 1.23009 0.79167 1.03916 1.00933 1.87904 1.21901 1.27015 1.94922 1.23477 0.93479 0.85355 0.95768 0.88037 1.21305 0.87131 0.94717 0.92063 1.44510 1.21804 1.66588 1.02022 1.19431 1.02656 1.29586 0.85946 0.90030 1.25649 0.98385 1.01424 0.99932 1.70146 1.20440 1.48292 1.20726 0.85072 0.77327 0.78114 0.78766 1.21607 1.21608 1.19193 1.21897 0.97066 0.95716 0.84596 1.21794 0.95773 0.98126 0.79587 0.91343 1.45586 1.19935 1.63801 1.05261 1.21204 0.83263 0.77500 0.89421 1.90797 1.29419 1.44054 1.79332 1.21446 0.88978 1.00839 0.87619 0.83013 1.22260 1.04531 0.89808 1.05137 1.43749 1.06082 1.30608 1.30381 1.20382 0.84249 1.02046 1.01622 1.20417 1.02032 0.95494 0.96132 1.20856 0.99295 1.02601 1.02545 1.20872 0.92527 1.04526 1.05946 1.20853 0.98164 0.95872 0.96063 1.20398 0.93122 0.98168 1.02130 0.94685 0.88263 0.91274 0.95792 0.96625 0.94189 0.95025 0.93707 0.74329 0.87415 0.88956 0.91983 0.89897 0.91107 0.92706 0.84646 0.83655 0.91407 0.88621 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.85 113.37 1.23 1.85 16 2 O -0.40 -13.64 10.44 -148.98 -1.55 -15.19 16 3 C 0.08 2.75 3.06 31.79 0.10 2.84 16 4 H 0.10 2.79 7.68 -2.39 -0.02 2.77 16 5 C 0.17 8.48 5.16 86.73 0.45 8.92 16 6 N -0.62 -32.19 3.39 -691.96 -2.35 -34.54 16 7 C -0.25 -14.06 10.28 84.03 0.86 -13.20 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 10 N -0.95 -56.70 10.31 21.65 0.22 -56.48 16 11 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.13 5.57 6.93 86.86 0.60 6.17 16 16 C 0.15 5.46 3.04 46.38 0.14 5.60 16 17 H 0.07 2.97 7.73 -2.38 -0.02 2.95 16 18 N -0.69 -16.93 5.12 -435.95 -2.23 -19.16 16 19 C 0.50 13.47 6.08 87.66 0.53 14.00 16 20 O -0.56 -21.14 13.63 -3.03 -0.04 -21.19 16 21 C 0.12 2.17 3.18 44.25 0.14 2.31 16 22 H 0.15 1.82 6.64 -2.39 -0.02 1.81 16 23 C -0.16 -2.04 9.11 71.98 0.66 -1.39 16 24 N -0.43 -10.40 2.40 -477.19 -1.15 -11.55 16 25 C 0.03 0.78 5.76 41.08 0.24 1.01 16 26 C -0.08 -2.17 8.30 71.23 0.59 -1.58 16 27 C -0.23 -6.30 10.76 22.14 0.24 -6.06 16 28 C -0.21 -5.33 10.76 22.14 0.24 -5.10 16 29 C 0.00 0.01 6.89 41.08 0.28 0.29 16 30 C -0.08 -1.13 9.93 71.24 0.71 -0.43 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 34 H 0.02 1.27 7.51 -2.39 -0.02 1.25 16 35 H 0.02 0.89 7.29 -2.38 -0.02 0.88 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.42 6.51 7.93 -92.71 -0.74 5.77 16 40 H 0.11 0.80 7.56 -2.39 -0.02 0.78 16 41 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.06 1.02 5.84 -2.39 -0.01 1.00 16 43 H 0.08 1.73 7.78 -2.39 -0.02 1.71 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.63 5.04 -2.39 -0.01 1.62 16 46 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 47 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 50 H 0.08 0.78 7.07 -2.39 -0.02 0.76 16 Total: -1.00 -79.61 395.32 2.60 -77.01 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.20 Total: 20.79 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.47 Total: 12.25 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.50 Total: -121.72 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.60 Total: -36.38 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.61 2.60 -77.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.005 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds