Wall clock time and date at job start Tue Mar 31 2020 19:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53036 * 109.46031 * 2 1 4 4 C 1.53188 * 109.31302 * 178.63019 * 3 2 1 5 5 N 1.46927 * 108.77590 * 54.63749 * 4 3 2 6 6 C 1.34783 * 120.63348 * 126.36615 * 5 4 3 7 7 O 1.21349 * 119.99659 * 3.24777 * 6 5 4 8 8 C 1.49446 * 120.00084 * 183.23965 * 6 5 4 9 9 O 1.21349 * 119.99859 * 354.07139 * 8 6 5 10 10 N 1.34774 * 119.99893 * 174.06542 * 8 6 5 11 11 C 1.47801 * 135.01537 * 359.96907 * 10 8 6 12 12 C 1.54651 * 85.79475 * 153.82948 * 11 10 8 13 13 H 1.08997 * 115.01408 * 139.91625 * 12 11 10 14 14 C 1.53012 * 110.83831 * 270.23400 * 12 11 10 15 15 C 1.53104 * 109.44817 * 143.88948 * 14 12 11 16 16 N 1.46616 * 108.00681 * 301.02654 * 15 14 12 17 17 C 1.36941 * 119.88874 * 237.32186 * 16 15 14 18 18 H 1.07998 * 120.00329 * 148.62811 * 17 16 15 19 19 C 1.38811 * 119.99885 * 328.62892 * 17 16 15 20 20 N 1.31617 * 119.99703 * 335.27951 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 155.28449 * 19 17 16 22 22 H 1.48500 * 109.47329 * 89.99821 * 21 19 17 23 23 H 1.48495 * 109.47293 * 329.99645 * 21 19 17 24 24 H 1.48501 * 109.46827 * 209.99565 * 21 19 17 25 25 C 1.45681 * 120.22295 * 57.59649 * 16 15 14 26 26 C 1.46818 * 135.01188 * 180.02562 * 10 8 6 27 27 H 1.08997 * 111.56237 * 94.45792 * 26 10 8 28 28 C 1.46929 * 118.73821 * 306.64426 * 5 4 3 29 29 C 1.52762 * 109.00858 * 53.30659 * 28 5 4 30 30 H 1.08997 * 109.47695 * 59.99317 * 1 2 3 31 31 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46531 * 299.99636 * 1 2 3 33 33 H 1.09000 * 109.46095 * 119.97754 * 2 1 3 34 34 H 1.09005 * 109.49871 * 58.67837 * 3 2 1 35 35 H 1.08998 * 109.52696 * 298.59876 * 3 2 1 36 36 H 1.09000 * 109.58796 * 294.85044 * 4 3 2 37 37 H 1.09006 * 109.70755 * 174.49495 * 4 3 2 38 38 H 1.09003 * 113.82046 * 39.61299 * 11 10 8 39 39 H 1.08998 * 113.82552 * 268.05431 * 11 10 8 40 40 H 1.09005 * 109.47716 * 23.89881 * 14 12 11 41 41 H 1.08995 * 109.47864 * 263.88787 * 14 12 11 42 42 H 1.08989 * 109.75544 * 181.39800 * 15 14 12 43 43 H 1.09002 * 109.79474 * 60.67303 * 15 14 12 44 44 H 0.96995 * 120.00717 * 354.24721 * 20 19 17 45 45 H 1.08997 * 108.71399 * 81.47365 * 25 16 15 46 46 H 1.08999 * 108.71503 * 199.49431 * 25 16 15 47 47 H 1.08995 * 109.58808 * 173.13937 * 28 5 4 48 48 H 1.08997 * 109.58340 * 293.56677 * 28 5 4 49 49 H 1.08998 * 109.56645 * 185.55258 * 29 28 5 50 50 H 1.08998 * 109.38735 * 65.51389 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5714 1.4391 0.0346 5 7 4.0676 0.6239 -1.0825 6 6 4.9609 1.1279 -1.9569 7 8 5.4076 2.2442 -1.7922 8 6 5.4014 0.3122 -3.1290 9 8 5.0393 -0.8411 -3.2360 10 7 6.2007 0.8574 -4.0672 11 6 6.8224 2.1830 -4.2689 12 6 7.9012 1.4273 -5.0794 13 1 8.2379 1.9345 -5.9836 14 6 9.0477 0.9768 -4.1719 15 6 9.5632 -0.3866 -4.6405 16 7 8.4467 -1.3354 -4.5892 17 6 8.5536 -2.4750 -3.8373 18 1 7.6753 -2.9021 -3.3763 19 6 9.7908 -3.0811 -3.6678 20 7 10.7408 -2.8986 -4.5603 21 14 10.1074 -4.1557 -2.1730 22 1 9.7400 -5.5601 -2.4862 23 1 9.2877 -3.6721 -1.0331 24 1 11.5462 -4.0893 -1.8115 25 6 7.2262 -1.0729 -5.3400 26 6 6.8141 0.3809 -5.3132 27 1 6.2009 0.6253 -6.1805 28 6 3.5668 -0.7493 -1.2320 29 6 2.0395 -0.7229 -1.2491 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5135 0.8902 34 1 1.6574 1.9639 0.8778 35 1 1.6976 1.9503 -0.9020 36 1 3.9145 1.0141 0.9778 37 1 3.9438 2.4589 -0.0636 38 1 7.1983 2.6371 -3.3520 39 1 6.2194 2.8656 -4.8677 40 1 8.6889 0.8964 -3.1457 41 1 9.8561 1.7064 -4.2181 42 1 10.3638 -0.7238 -3.9824 43 1 9.9344 -0.3095 -5.6625 44 1 10.5519 -2.4104 -5.3769 45 1 7.3800 -1.3777 -6.3751 46 1 6.4199 -1.6727 -4.9177 47 1 3.9340 -1.1725 -2.1669 48 1 3.9096 -1.3564 -0.3941 49 1 1.6568 -1.7434 -1.2603 50 1 1.6967 -0.1960 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084705360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:17 Heat of formation + Delta-G solvation = 5.750833 kcal Electronic energy + Delta-G solvation = -31117.296873 eV Core-core repulsion = 27146.925608 eV Total energy + Delta-G solvation = -3970.371265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.07982 -39.97494 -37.94746 -37.65154 -35.57331 -33.98740 -31.83154 -31.29235 -30.98954 -29.24712 -28.52925 -26.91564 -25.02875 -23.82015 -23.40998 -23.21921 -21.99363 -21.09647 -20.41811 -19.39281 -18.02904 -17.53669 -17.04604 -16.54894 -16.21598 -15.63015 -15.21946 -14.91756 -14.70212 -14.39823 -14.21419 -14.06086 -13.88029 -13.57784 -13.48369 -13.45786 -13.11015 -12.85705 -12.82647 -12.56763 -12.09824 -12.01591 -11.89863 -11.80654 -11.51557 -11.33975 -11.17801 -11.01797 -10.79416 -10.68117 -10.61903 -10.46603 -10.34962 -10.09203 -9.97373 -9.84812 -9.25257 -8.80133 -8.64300 -8.51154 -8.28845 -6.80023 -6.01773 -3.20660 1.65317 2.34450 3.37399 3.43389 3.53291 3.57502 3.73265 4.22205 4.52354 4.55909 4.57936 4.62924 4.65867 4.95458 5.06494 5.12230 5.17897 5.27276 5.30203 5.32672 5.41169 5.44660 5.46715 5.54617 5.61234 5.62774 5.64461 5.66530 5.73255 5.81141 5.84700 5.91343 5.94906 5.95494 6.11005 6.14932 6.24371 6.36685 6.44141 6.45735 6.52887 6.67758 6.81162 7.06051 7.16582 7.21474 7.71799 7.92870 8.16624 8.25536 8.65354 9.19786 9.90830 10.31820 11.26077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.003844 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.875783 B = 7281.435489 C = 8505.579229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.126 4.126 4 C 0.107 3.893 5 N -0.581 5.581 6 C 0.514 3.486 7 O -0.527 6.527 8 C 0.533 3.467 9 O -0.505 6.505 10 N -0.596 5.596 11 C 0.104 3.896 12 C -0.110 4.110 13 H 0.093 0.907 14 C -0.120 4.120 15 C 0.151 3.849 16 N -0.589 5.589 17 C -0.343 4.343 18 H 0.054 0.946 19 C -0.022 4.022 20 N -0.916 5.916 21 Si 1.063 2.937 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.286 1.286 25 C 0.143 3.857 26 C 0.131 3.869 27 H 0.084 0.916 28 C 0.042 3.958 29 C -0.125 4.125 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.268 0.732 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.165 0.835 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 11.135 4.807 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.165 4.165 4 C -0.016 4.016 5 N -0.315 5.315 6 C 0.297 3.703 7 O -0.403 6.403 8 C 0.318 3.682 9 O -0.383 6.383 10 N -0.330 5.330 11 C -0.019 4.019 12 C -0.129 4.129 13 H 0.111 0.889 14 C -0.159 4.159 15 C 0.025 3.975 16 N -0.313 5.313 17 C -0.473 4.473 18 H 0.072 0.928 19 C -0.224 4.224 20 N -0.557 5.557 21 Si 0.893 3.107 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.212 1.212 25 C 0.016 3.984 26 C 0.028 3.972 27 H 0.101 0.899 28 C -0.078 4.078 29 C -0.163 4.163 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.092 0.908 47 H 0.180 0.820 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.194 10.132 5.807 19.164 hybrid contribution -1.516 0.945 -0.604 1.886 sum -16.710 11.078 5.203 20.713 Atomic orbital electron populations 1.21821 0.95106 1.01761 1.01599 1.21192 0.95631 0.95833 0.98892 1.21960 0.94822 0.97067 1.02606 1.21694 0.93887 0.97092 0.88877 1.47948 1.41504 1.15370 1.26654 1.20176 0.80022 0.86506 0.83608 1.90685 1.54833 1.19774 1.75029 1.19544 0.78664 0.86776 0.83188 1.90241 1.54548 1.17507 1.76034 1.49604 1.45619 1.15338 1.22479 1.23709 0.91986 0.85868 1.00292 1.22924 0.95050 0.95719 0.99204 0.88882 1.21928 0.95752 0.99562 0.98707 1.20853 0.91625 0.86821 0.98228 1.43568 1.12082 1.21147 1.54486 1.19965 0.96989 1.03456 1.26841 0.92835 1.25816 0.94064 0.99450 1.03096 1.70751 1.36394 1.40469 1.08042 0.83569 0.75743 0.75651 0.75714 1.22121 1.21995 1.21221 1.20276 0.91780 0.90996 0.95367 1.22666 0.91212 0.98647 0.84695 0.89865 1.23341 0.93961 0.81387 1.09115 1.21884 0.95751 1.01004 0.97703 0.92783 0.92570 0.92808 0.91003 0.90712 0.91583 0.91205 0.88974 0.88918 0.89927 0.91987 0.92368 0.90001 0.96224 0.92103 0.96145 0.90828 0.81957 0.91722 0.90603 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.86 2.68 -90.58 -0.24 -1.11 16 3 C -0.13 -1.15 5.36 -26.62 -0.14 -1.29 16 4 C 0.11 1.22 6.43 -3.71 -0.02 1.19 16 5 N -0.58 -8.31 2.98 -173.54 -0.52 -8.82 16 6 C 0.51 8.72 7.75 -11.58 -0.09 8.63 16 7 O -0.53 -9.44 14.51 5.50 0.08 -9.36 16 8 C 0.53 9.88 7.98 -11.59 -0.09 9.79 16 9 O -0.50 -10.15 12.15 5.50 0.07 -10.08 16 10 N -0.60 -10.37 3.35 -174.30 -0.58 -10.95 16 11 C 0.10 1.48 7.19 -3.01 -0.02 1.46 16 12 C -0.11 -1.68 4.39 -89.96 -0.40 -2.07 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -2.20 5.66 -26.67 -0.15 -2.36 16 15 C 0.15 3.45 4.70 -3.93 -0.02 3.43 16 16 N -0.59 -14.79 2.81 -174.86 -0.49 -15.28 16 17 C -0.34 -9.80 9.38 -15.06 -0.14 -9.94 16 18 H 0.05 1.60 7.92 -52.49 -0.42 1.19 16 19 C -0.02 -0.64 4.63 -17.43 -0.08 -0.72 16 20 N -0.92 -27.43 12.45 55.49 0.69 -26.74 16 21 Si 1.06 25.98 29.99 -169.99 -5.10 20.88 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C 0.14 3.08 6.20 -5.42 -0.03 3.05 16 26 C 0.13 2.24 4.23 -69.41 -0.29 1.94 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 C 0.04 0.57 6.23 -3.93 -0.02 0.55 16 29 C -0.13 -1.32 5.34 -26.83 -0.14 -1.46 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.11 7.02 -51.93 -0.36 0.75 16 38 H 0.09 1.40 7.13 -51.93 -0.37 1.03 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.28 7.69 -51.93 -0.40 0.88 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 2.13 6.31 -51.94 -0.33 1.80 16 43 H 0.02 0.45 7.99 -51.93 -0.42 0.03 16 44 H 0.27 8.04 6.93 -40.82 -0.28 7.76 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 1.74 6.38 -51.93 -0.33 1.41 16 47 H 0.16 2.64 3.73 -57.14 -0.21 2.43 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -32.50 380.14 -9.93 -42.43 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.26 Total: 1.86 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.55 Total: 10.34 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.90 Total: -61.80 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.15 Total: -19.44 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.50 -9.93 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084705360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.179 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds