Wall clock time and date at job start Tue Mar 31 2020 19:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53036 * 109.46031 * 2 1 4 4 C 1.53188 * 109.31302 * 178.63019 * 3 2 1 5 5 N 1.46927 * 108.77590 * 54.63749 * 4 3 2 6 6 C 1.34783 * 120.63348 * 126.36615 * 5 4 3 7 7 O 1.21349 * 119.99659 * 3.24777 * 6 5 4 8 8 C 1.49446 * 120.00084 * 183.23965 * 6 5 4 9 9 O 1.21349 * 119.99859 * 354.07139 * 8 6 5 10 10 N 1.34774 * 119.99893 * 174.06542 * 8 6 5 11 11 C 1.47801 * 135.01537 * 359.96907 * 10 8 6 12 12 C 1.54651 * 85.79475 * 153.82948 * 11 10 8 13 13 H 1.08997 * 115.01408 * 139.91625 * 12 11 10 14 14 C 1.53012 * 110.83831 * 270.23400 * 12 11 10 15 15 C 1.53104 * 109.44817 * 143.88948 * 14 12 11 16 16 N 1.46616 * 108.00681 * 301.02654 * 15 14 12 17 17 C 1.36941 * 119.88874 * 237.32186 * 16 15 14 18 18 H 1.07998 * 120.00329 * 148.62811 * 17 16 15 19 19 C 1.38811 * 119.99885 * 328.62892 * 17 16 15 20 20 N 1.31617 * 119.99703 * 335.27951 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 155.28449 * 19 17 16 22 22 H 1.48500 * 109.47329 * 89.99821 * 21 19 17 23 23 H 1.48495 * 109.47293 * 329.99645 * 21 19 17 24 24 H 1.48501 * 109.46827 * 209.99565 * 21 19 17 25 25 C 1.45681 * 120.22295 * 57.59649 * 16 15 14 26 26 C 1.46818 * 135.01188 * 180.02562 * 10 8 6 27 27 H 1.08997 * 111.56237 * 94.45792 * 26 10 8 28 28 C 1.46929 * 118.73821 * 306.64426 * 5 4 3 29 29 C 1.52762 * 109.00858 * 53.30659 * 28 5 4 30 30 H 1.08997 * 109.47695 * 59.99317 * 1 2 3 31 31 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46531 * 299.99636 * 1 2 3 33 33 H 1.09000 * 109.46095 * 119.97754 * 2 1 3 34 34 H 1.09005 * 109.49871 * 58.67837 * 3 2 1 35 35 H 1.08998 * 109.52696 * 298.59876 * 3 2 1 36 36 H 1.09000 * 109.58796 * 294.85044 * 4 3 2 37 37 H 1.09006 * 109.70755 * 174.49495 * 4 3 2 38 38 H 1.09003 * 113.82046 * 39.61299 * 11 10 8 39 39 H 1.08998 * 113.82552 * 268.05431 * 11 10 8 40 40 H 1.09005 * 109.47716 * 23.89881 * 14 12 11 41 41 H 1.08995 * 109.47864 * 263.88787 * 14 12 11 42 42 H 1.08989 * 109.75544 * 181.39800 * 15 14 12 43 43 H 1.09002 * 109.79474 * 60.67303 * 15 14 12 44 44 H 0.96995 * 120.00717 * 354.24721 * 20 19 17 45 45 H 1.08997 * 108.71399 * 81.47365 * 25 16 15 46 46 H 1.08999 * 108.71503 * 199.49431 * 25 16 15 47 47 H 1.08995 * 109.58808 * 173.13937 * 28 5 4 48 48 H 1.08997 * 109.58340 * 293.56677 * 28 5 4 49 49 H 1.08998 * 109.56645 * 185.55258 * 29 28 5 50 50 H 1.08998 * 109.38735 * 65.51389 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5714 1.4391 0.0346 5 7 4.0676 0.6239 -1.0825 6 6 4.9609 1.1279 -1.9569 7 8 5.4076 2.2442 -1.7922 8 6 5.4014 0.3122 -3.1290 9 8 5.0393 -0.8411 -3.2360 10 7 6.2007 0.8574 -4.0672 11 6 6.8224 2.1830 -4.2689 12 6 7.9012 1.4273 -5.0794 13 1 8.2379 1.9345 -5.9836 14 6 9.0477 0.9768 -4.1719 15 6 9.5632 -0.3866 -4.6405 16 7 8.4467 -1.3354 -4.5892 17 6 8.5536 -2.4750 -3.8373 18 1 7.6753 -2.9021 -3.3763 19 6 9.7908 -3.0811 -3.6678 20 7 10.7408 -2.8986 -4.5603 21 14 10.1074 -4.1557 -2.1730 22 1 9.7400 -5.5601 -2.4862 23 1 9.2877 -3.6721 -1.0331 24 1 11.5462 -4.0893 -1.8115 25 6 7.2262 -1.0729 -5.3400 26 6 6.8141 0.3809 -5.3132 27 1 6.2009 0.6253 -6.1805 28 6 3.5668 -0.7493 -1.2320 29 6 2.0395 -0.7229 -1.2491 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5135 0.8902 34 1 1.6574 1.9639 0.8778 35 1 1.6976 1.9503 -0.9020 36 1 3.9145 1.0141 0.9778 37 1 3.9438 2.4589 -0.0636 38 1 7.1983 2.6371 -3.3520 39 1 6.2194 2.8656 -4.8677 40 1 8.6889 0.8964 -3.1457 41 1 9.8561 1.7064 -4.2181 42 1 10.3638 -0.7238 -3.9824 43 1 9.9344 -0.3095 -5.6625 44 1 10.5519 -2.4104 -5.3769 45 1 7.3800 -1.3777 -6.3751 46 1 6.4199 -1.6727 -4.9177 47 1 3.9340 -1.1725 -2.1669 48 1 3.9096 -1.3564 -0.3941 49 1 1.6568 -1.7434 -1.2603 50 1 1.6967 -0.1960 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084705360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:16 Heat of formation + Delta-G solvation = -14.593897 kcal Electronic energy + Delta-G solvation = -31118.179087 eV Core-core repulsion = 27146.925608 eV Total energy + Delta-G solvation = -3971.253478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.39440 -41.21687 -39.20487 -38.85078 -37.41319 -34.97945 -33.69846 -32.73628 -32.18261 -30.74998 -29.44781 -28.59796 -26.23578 -25.66069 -24.59632 -24.37225 -23.14252 -22.68203 -21.54022 -20.50605 -19.76911 -19.12078 -18.30897 -18.00185 -17.54727 -17.01585 -16.56127 -16.10938 -16.01110 -15.72281 -15.58302 -15.44185 -15.17844 -15.04886 -14.99889 -14.54782 -14.44445 -14.21946 -14.08770 -13.82161 -13.56086 -13.33265 -12.84583 -12.81316 -12.77435 -12.62412 -12.59143 -12.46199 -12.21174 -12.01244 -11.95120 -11.84852 -11.79326 -11.58592 -11.39722 -11.37900 -11.12174 -10.49860 -9.95257 -9.93562 -9.76955 -8.89540 -8.25597 -5.44052 0.31274 1.11853 1.51674 1.59444 1.77902 2.08731 2.18477 2.60037 2.99907 3.16159 3.32539 3.53923 3.72580 3.76729 3.81239 3.83276 3.93648 4.06549 4.18981 4.21396 4.26060 4.37928 4.39152 4.48875 4.51259 4.61578 4.68446 4.71494 4.73101 4.78419 4.83469 4.84809 4.95075 4.96252 5.00546 5.02305 5.04596 5.07379 5.11242 5.13614 5.23774 5.32819 5.40485 5.46360 5.51154 5.86824 5.97402 6.40844 6.42496 6.63493 6.91181 7.10562 7.79210 8.17828 8.97390 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.003844 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.875783 B = 7281.435489 C = 8505.579229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.118 4.118 4 C 0.101 3.899 5 N -0.576 5.576 6 C 0.509 3.491 7 O -0.542 6.542 8 C 0.518 3.482 9 O -0.535 6.535 10 N -0.605 5.605 11 C 0.116 3.884 12 C -0.100 4.100 13 H 0.138 0.862 14 C -0.109 4.109 15 C 0.154 3.846 16 N -0.607 5.607 17 C -0.351 4.351 18 H 0.028 0.972 19 C -0.066 4.066 20 N -0.935 5.935 21 Si 1.108 2.892 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.282 1.282 25 C 0.144 3.856 26 C 0.126 3.874 27 H 0.124 0.876 28 C 0.041 3.959 29 C -0.118 4.118 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.023 0.977 44 H 0.257 0.743 45 H 0.022 0.978 46 H 0.043 0.957 47 H 0.138 0.862 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 13.158 5.269 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.156 4.156 4 C -0.020 4.020 5 N -0.309 5.309 6 C 0.292 3.708 7 O -0.420 6.420 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.339 5.339 11 C -0.005 4.005 12 C -0.118 4.118 13 H 0.156 0.844 14 C -0.148 4.148 15 C 0.029 3.971 16 N -0.331 5.331 17 C -0.481 4.481 18 H 0.046 0.954 19 C -0.264 4.264 20 N -0.576 5.576 21 Si 0.933 3.067 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.207 1.207 25 C 0.017 3.983 26 C 0.023 3.977 27 H 0.141 0.859 28 C -0.080 4.080 29 C -0.156 4.156 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.154 0.846 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.710 12.187 6.264 21.610 hybrid contribution -1.073 0.271 -0.760 1.343 sum -17.783 12.458 5.504 22.399 Atomic orbital electron populations 1.21776 0.93591 1.02270 1.02204 1.21183 0.96803 0.95393 0.97874 1.21936 0.92720 0.97442 1.03538 1.21947 0.95661 0.96267 0.88090 1.48104 1.40389 1.15786 1.26573 1.20002 0.80697 0.86301 0.83818 1.90660 1.55722 1.20100 1.75547 1.20020 0.78879 0.86798 0.83961 1.90276 1.55735 1.18660 1.76869 1.49882 1.44987 1.16800 1.22249 1.23850 0.91474 0.84952 1.00240 1.22912 0.93499 0.95151 1.00274 0.84425 1.21755 0.97950 0.97501 0.97636 1.20755 0.90137 0.88689 0.97502 1.43746 1.13654 1.20863 1.54842 1.20007 0.96297 1.04723 1.27091 0.95425 1.27014 0.93949 1.00579 1.04814 1.70855 1.36732 1.41758 1.08249 0.82955 0.75793 0.74911 0.73013 1.20697 1.21435 1.20735 1.20283 0.89428 0.94162 0.94383 1.22775 0.92967 0.95776 0.86193 0.85890 1.23230 0.96126 0.80989 1.07647 1.21832 0.93274 1.01948 0.98578 0.92931 0.92173 0.91447 0.90490 0.88100 0.92184 0.90056 0.89605 0.89720 0.85850 0.94890 0.89245 0.93945 0.95942 0.93307 0.96070 0.93863 0.84595 0.91613 0.89592 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 2 C -0.09 -1.47 2.68 -10.77 -0.03 -1.50 16 3 C -0.12 -1.88 5.36 30.67 0.16 -1.72 16 4 C 0.10 2.18 6.43 86.36 0.56 2.74 16 5 N -0.58 -16.44 2.98 -821.30 -2.45 -18.89 16 6 C 0.51 17.42 7.75 87.27 0.68 18.09 16 7 O -0.54 -19.20 14.51 -3.24 -0.05 -19.25 16 8 C 0.52 19.61 7.98 87.27 0.70 20.30 16 9 O -0.53 -22.66 12.15 -3.24 -0.04 -22.70 16 10 N -0.61 -20.57 3.35 -823.74 -2.76 -23.32 16 11 C 0.12 2.96 7.19 86.33 0.62 3.58 16 12 C -0.10 -2.73 4.39 -10.31 -0.05 -2.78 16 13 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 14 C -0.11 -3.89 5.66 30.63 0.17 -3.72 16 15 C 0.15 7.18 4.70 86.39 0.41 7.59 16 16 N -0.61 -31.46 2.81 -707.13 -1.99 -33.45 16 17 C -0.35 -20.94 9.38 84.03 0.79 -20.15 16 18 H 0.03 1.77 7.92 -2.91 -0.02 1.74 16 19 C -0.07 -3.91 4.63 84.86 0.39 -3.52 16 20 N -0.93 -57.49 12.45 21.65 0.27 -57.22 16 21 Si 1.11 53.78 29.99 68.60 2.06 55.83 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 25 C 0.14 6.33 6.20 85.93 0.53 6.86 16 26 C 0.13 4.10 4.23 43.86 0.19 4.28 16 27 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 28 C 0.04 1.12 6.23 86.22 0.54 1.65 16 29 C -0.12 -2.41 5.34 30.53 0.16 -2.24 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.98 7.02 -2.38 -0.02 1.97 16 38 H 0.08 2.37 7.13 -2.39 -0.02 2.35 16 39 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.03 1.35 7.69 -2.38 -0.02 1.33 16 41 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.04 2.28 6.31 -2.39 -0.02 2.27 16 43 H 0.02 1.02 7.99 -2.39 -0.02 1.00 16 44 H 0.26 15.94 6.93 -92.71 -0.64 15.30 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 2.15 6.38 -2.39 -0.02 2.13 16 47 H 0.14 4.68 3.73 -84.89 -0.32 4.36 16 48 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -75.39 380.14 2.28 -73.11 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.75 Total: 17.49 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 6.48 Total: 28.39 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -6.92 Total: -132.87 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.09 Total: -41.94 kcal Atomic # 14 Polarization: 53.78 SS G_CDS: 2.06 Total: 55.83 kcal Total: -75.39 2.28 -73.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084705360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.516 kcal (2) G-P(sol) polarization free energy of solvation -75.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds