Wall clock time and date at job start Tue Mar 31 2020 19:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.60402 * 2 1 4 4 O 1.21289 * 119.99934 * 234.75853 * 3 2 1 5 5 N 1.34773 * 119.99747 * 55.03390 * 3 2 1 6 6 C 1.47151 * 121.21499 * 4.85471 * 5 3 2 7 7 C 1.53334 * 107.71307 * 122.69306 * 6 5 3 8 8 C 1.53097 * 110.50123 * 57.57181 * 7 6 5 9 9 H 1.08992 * 113.06017 * 70.86328 * 8 7 6 10 10 C 1.56028 * 106.39313 * 195.29127 * 8 7 6 11 11 C 1.54503 * 102.61023 * 78.38224 * 10 8 7 12 12 N 1.47434 * 107.15082 * 22.84469 * 11 10 8 13 13 C 1.36932 * 126.05979 * 181.66368 * 12 11 10 14 14 H 1.08004 * 120.00215 * 174.94822 * 13 12 11 15 15 C 1.38817 * 119.99974 * 354.95082 * 13 12 11 16 16 N 1.31616 * 120.00220 * 5.00805 * 15 13 12 17 17 Si 1.86799 * 119.99705 * 185.01563 * 15 13 12 18 18 H 1.48496 * 109.47730 * 94.99900 * 17 15 13 19 19 H 1.48502 * 109.46884 * 214.99557 * 17 15 13 20 20 H 1.48498 * 109.47595 * 334.99256 * 17 15 13 21 21 C 1.46461 * 107.87943 * 1.62230 * 12 11 10 22 22 H 1.08994 * 108.42290 * 89.23929 * 21 12 11 23 23 C 1.46757 * 121.21112 * 185.14065 * 5 3 2 24 24 C 1.53351 * 109.73843 * 120.40762 * 2 1 3 25 25 C 1.53071 * 108.41250 * 52.29168 * 24 2 1 26 26 C 1.50176 * 109.89315 * 48.91466 * 25 24 2 27 27 O 1.21277 * 118.24779 * 162.39438 * 26 25 24 28 28 N 1.33353 * 123.50538 * 342.42009 * 26 25 24 29 29 C 1.45757 * 124.10715 * 2.19676 * 28 26 25 30 30 H 1.08999 * 109.47041 * 65.06783 * 1 2 3 31 31 H 1.09001 * 109.46815 * 185.06087 * 1 2 3 32 32 H 1.08992 * 109.46855 * 305.06453 * 1 2 3 33 33 H 1.09004 * 109.75561 * 242.33786 * 6 5 3 34 34 H 1.08996 * 109.76210 * 3.09607 * 6 5 3 35 35 H 1.09001 * 109.39387 * 297.24652 * 7 6 5 36 36 H 1.08998 * 109.16103 * 177.75132 * 7 6 5 37 37 H 1.08992 * 110.78279 * 320.09984 * 10 8 7 38 38 H 1.09002 * 110.94070 * 196.73662 * 10 8 7 39 39 H 1.08992 * 109.90358 * 263.45731 * 11 10 8 40 40 H 1.09001 * 109.89990 * 142.22272 * 11 10 8 41 41 H 0.96997 * 120.00386 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.22696 * 352.82694 * 23 5 3 43 43 H 1.08997 * 109.23229 * 112.19042 * 23 5 3 44 44 H 1.08999 * 109.67271 * 172.04088 * 24 2 1 45 45 H 1.08998 * 109.66821 * 292.56908 * 24 2 1 46 46 H 1.09008 * 109.40384 * 288.78783 * 25 24 2 47 47 H 1.09001 * 109.40494 * 169.04580 * 25 24 2 48 48 H 0.97005 * 117.94929 * 182.21982 * 28 26 25 49 49 H 1.09001 * 109.30337 * 220.63472 * 29 28 26 50 50 H 1.09002 * 109.13344 * 101.15475 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.8101 1.7876 -0.8579 5 7 1.6316 2.2789 0.9565 6 6 0.7823 1.8333 2.0726 7 6 1.5163 2.1630 3.3778 8 6 1.8216 3.6610 3.4576 9 1 0.9321 4.2701 3.6178 10 6 2.8860 3.8341 4.5853 11 6 4.1937 3.4045 3.8836 12 7 3.9844 3.5718 2.4338 13 6 4.8877 3.2724 1.4492 14 1 4.6026 3.3569 0.4109 15 6 6.1699 2.8601 1.7855 16 7 6.4877 2.6620 3.0472 17 14 7.4442 2.5867 0.4473 18 1 8.2637 3.8145 0.2857 19 1 8.3232 1.4511 0.8254 20 1 6.7588 2.2771 -0.8332 21 6 2.6388 4.1141 2.2334 22 1 2.6990 5.2022 2.2560 23 6 2.0174 3.6943 0.9196 24 6 2.0479 -0.7306 1.2449 25 6 1.3750 -2.1037 1.3145 26 6 1.4769 -2.7908 -0.0170 27 8 1.2953 -3.9891 -0.0599 28 7 1.7568 -2.1538 -1.1546 29 6 2.0431 -0.7273 -1.2434 30 1 -0.3633 0.4332 -0.9319 31 1 -0.3633 -1.0237 0.0907 32 1 -0.3633 0.5904 0.8411 33 1 -0.1728 2.3577 2.0410 34 1 0.6157 0.7584 2.0025 35 1 2.4505 1.6030 3.4191 36 1 0.8891 1.8784 4.2226 37 1 2.6662 3.1791 5.4283 38 1 2.9444 4.8730 4.9097 39 1 4.4102 2.3604 4.1092 40 1 5.0175 4.0367 4.2149 41 1 7.3837 2.3742 3.2823 42 1 2.7377 3.8492 0.1163 43 1 1.1331 4.3027 0.7301 44 1 3.1286 -0.8542 1.1747 45 1 1.8010 -0.1553 2.1371 46 1 0.3247 -1.9794 1.5783 47 1 1.8683 -2.7106 2.0738 48 1 1.7705 -2.6721 -1.9744 49 1 1.5560 -0.3165 -2.1278 50 1 3.1204 -0.5836 -1.3260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085013313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:46 Heat of formation + Delta-G solvation = -24.208757 kcal Electronic energy + Delta-G solvation = -32435.761605 eV Core-core repulsion = 28464.091195 eV Total energy + Delta-G solvation = -3971.670410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.29191 -39.73354 -38.32807 -36.52478 -35.28343 -33.49812 -32.85379 -31.25244 -30.82547 -29.04651 -28.46647 -27.12015 -25.05690 -24.72304 -23.96544 -22.72235 -22.17168 -20.37959 -19.99553 -18.72278 -17.97541 -17.41727 -16.67474 -16.45577 -16.05466 -15.73942 -15.42080 -15.08011 -14.89348 -14.41599 -14.18456 -14.11161 -13.86492 -13.68189 -13.47596 -13.07000 -12.94422 -12.62542 -12.53876 -12.27832 -12.03519 -11.90493 -11.71014 -11.52625 -11.42953 -11.33146 -10.97163 -10.92384 -10.91189 -10.78138 -10.65657 -10.11072 -9.89428 -9.84950 -9.76623 -9.67343 -9.50512 -9.25763 -9.08296 -8.53667 -8.18813 -6.77702 -5.66092 -2.97406 2.58152 2.94346 3.08639 3.43804 3.45495 3.51978 3.57194 4.30201 4.43873 4.53851 4.56983 4.60915 4.86702 4.95807 5.01389 5.06510 5.21183 5.28075 5.37897 5.39407 5.44352 5.47556 5.57329 5.60334 5.63225 5.68658 5.71547 5.72219 5.85659 5.91522 5.95661 6.04629 6.08492 6.13565 6.21082 6.26462 6.39492 6.42443 6.59219 6.67072 6.69931 6.87985 7.03026 7.23739 7.58057 7.65093 7.80200 7.91165 8.13454 8.28816 8.55597 9.28296 9.89205 10.53523 11.46549 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.005313 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.705150 B = 5269.281388 C = 6391.919039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.092 4.092 3 C 0.536 3.464 4 O -0.529 6.529 5 N -0.588 5.588 6 C 0.089 3.911 7 C -0.124 4.124 8 C -0.102 4.102 9 H 0.075 0.925 10 C -0.144 4.144 11 C 0.178 3.822 12 N -0.587 5.587 13 C -0.213 4.213 14 H 0.084 0.916 15 C -0.008 4.008 16 N -0.925 5.925 17 Si 0.901 3.099 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.277 1.277 21 C 0.154 3.846 22 H 0.026 0.974 23 C 0.113 3.887 24 C -0.125 4.125 25 C -0.134 4.134 26 C 0.521 3.479 27 O -0.566 6.566 28 N -0.715 5.715 29 C 0.132 3.868 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.249 0.751 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.400 0.600 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -2.985 -1.116 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.095 4.095 3 C 0.322 3.678 4 O -0.405 6.405 5 N -0.320 5.320 6 C -0.034 4.034 7 C -0.163 4.163 8 C -0.122 4.122 9 H 0.093 0.907 10 C -0.183 4.183 11 C 0.054 3.946 12 N -0.313 5.313 13 C -0.341 4.341 14 H 0.102 0.898 15 C -0.203 4.203 16 N -0.573 5.573 17 Si 0.732 3.268 18 H -0.219 1.219 19 H -0.221 1.221 20 H -0.203 1.203 21 C 0.046 3.954 22 H 0.043 0.957 23 C -0.010 4.010 24 C -0.162 4.162 25 C -0.174 4.174 26 C 0.308 3.692 27 O -0.445 6.445 28 N -0.367 5.367 29 C 0.007 3.993 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.235 0.765 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.392 -3.339 -1.425 15.814 hybrid contribution 0.899 -0.153 -0.831 1.234 sum -14.493 -3.493 -2.256 15.077 Atomic orbital electron populations 1.22314 0.92346 1.03149 1.03830 1.20938 0.97476 0.93909 0.97204 1.19775 0.80538 0.85878 0.81609 1.90718 1.33545 1.77891 1.38324 1.47657 1.50468 1.09730 1.24151 1.22363 0.93274 1.00789 0.86929 1.21962 1.01402 0.97294 0.95595 1.22374 0.97153 0.95394 0.97230 0.90671 1.23168 0.97874 1.00194 0.97038 1.21221 0.91297 0.99519 0.82612 1.44281 1.09815 1.74780 1.02383 1.19087 0.90219 1.37450 0.87321 0.89830 1.24705 0.97395 1.02140 0.96074 1.69958 1.19368 1.53145 1.14843 0.86227 0.81809 0.77229 0.81550 1.21873 1.22055 1.20267 1.20676 0.87184 0.95990 0.91577 0.95713 1.21418 0.98975 0.79748 1.00873 1.22018 1.02062 0.94650 0.97506 1.21697 1.03829 0.96897 0.94935 1.20188 0.75361 0.87214 0.86419 1.90744 1.51305 1.15217 1.87238 1.45451 1.71063 1.10194 1.09955 1.21233 1.02164 0.78808 0.97097 0.91736 0.91525 0.90070 0.91726 0.88398 0.89940 0.92008 0.92347 0.92754 0.94077 0.93876 0.94074 0.88597 0.92737 0.89746 0.88480 0.87929 0.87715 0.76469 0.89937 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 7.62 37.16 0.28 -1.18 16 2 C -0.09 -1.12 0.49 -155.52 -0.08 -1.19 16 3 C 0.54 8.70 6.50 -10.99 -0.07 8.62 16 4 O -0.53 -10.81 15.17 5.55 0.08 -10.72 16 5 N -0.59 -8.89 2.95 -173.79 -0.51 -9.41 16 6 C 0.09 1.02 3.99 -3.51 -0.01 1.01 16 7 C -0.12 -1.67 4.78 -26.51 -0.13 -1.79 16 8 C -0.10 -1.52 3.68 -88.43 -0.33 -1.85 16 9 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.14 -2.45 6.33 -24.32 -0.15 -2.60 16 11 C 0.18 4.04 4.61 -2.74 -0.01 4.03 16 12 N -0.59 -13.76 3.20 -164.42 -0.53 -14.28 16 13 C -0.21 -5.70 9.71 -15.06 -0.15 -5.85 16 14 H 0.08 2.31 6.39 -52.48 -0.34 1.97 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.81 10.41 55.49 0.58 -26.23 16 17 Si 0.90 22.85 29.56 -169.99 -5.02 17.83 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.15 2.85 2.97 -68.30 -0.20 2.65 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 C 0.11 1.92 5.68 -4.77 -0.03 1.89 16 24 C -0.12 -1.51 4.58 -26.51 -0.12 -1.63 16 25 C -0.13 -1.42 5.39 -28.10 -0.15 -1.57 16 26 C 0.52 6.79 6.95 -11.87 -0.08 6.71 16 27 O -0.57 -9.41 17.78 5.56 0.10 -9.31 16 28 N -0.72 -8.16 5.35 -61.39 -0.33 -8.49 16 29 C 0.13 1.59 5.32 -4.48 -0.02 1.56 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.07 0.57 5.61 -51.93 -0.29 0.27 16 32 H 0.08 0.66 4.58 -51.93 -0.24 0.42 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.10 0.95 2.80 -51.93 -0.15 0.81 16 35 H 0.08 1.41 6.58 -51.93 -0.34 1.06 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 1.04 7.19 -51.93 -0.37 0.67 16 40 H 0.04 1.12 7.44 -51.93 -0.39 0.74 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.10 1.95 5.51 -51.93 -0.29 1.66 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 45 H 0.10 1.13 4.55 -51.93 -0.24 0.90 16 46 H 0.10 0.86 6.85 -51.92 -0.36 0.50 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.40 4.04 8.80 -40.82 -0.36 3.69 16 49 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 50 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -33.70 361.45 -9.05 -42.75 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.52 Total: 3.92 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.35 Total: 8.50 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.79 Total: -58.41 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.70 -9.05 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085013313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.543 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds