Wall clock time and date at job start Tue Mar 31 2020 19:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.60402 * 2 1 4 4 O 1.21289 * 119.99934 * 234.75853 * 3 2 1 5 5 N 1.34773 * 119.99747 * 55.03390 * 3 2 1 6 6 C 1.47151 * 121.21499 * 4.85471 * 5 3 2 7 7 C 1.53334 * 107.71307 * 122.69306 * 6 5 3 8 8 C 1.53097 * 110.50123 * 57.57181 * 7 6 5 9 9 H 1.08992 * 113.06017 * 70.86328 * 8 7 6 10 10 C 1.56028 * 106.39313 * 195.29127 * 8 7 6 11 11 C 1.54503 * 102.61023 * 78.38224 * 10 8 7 12 12 N 1.47434 * 107.15082 * 22.84469 * 11 10 8 13 13 C 1.36932 * 126.05979 * 181.66368 * 12 11 10 14 14 H 1.08004 * 120.00215 * 174.94822 * 13 12 11 15 15 C 1.38817 * 119.99974 * 354.95082 * 13 12 11 16 16 N 1.31616 * 120.00220 * 5.00805 * 15 13 12 17 17 Si 1.86799 * 119.99705 * 185.01563 * 15 13 12 18 18 H 1.48496 * 109.47730 * 94.99900 * 17 15 13 19 19 H 1.48502 * 109.46884 * 214.99557 * 17 15 13 20 20 H 1.48498 * 109.47595 * 334.99256 * 17 15 13 21 21 C 1.46461 * 107.87943 * 1.62230 * 12 11 10 22 22 H 1.08994 * 108.42290 * 89.23929 * 21 12 11 23 23 C 1.46757 * 121.21112 * 185.14065 * 5 3 2 24 24 C 1.53351 * 109.73843 * 120.40762 * 2 1 3 25 25 C 1.53071 * 108.41250 * 52.29168 * 24 2 1 26 26 C 1.50176 * 109.89315 * 48.91466 * 25 24 2 27 27 O 1.21277 * 118.24779 * 162.39438 * 26 25 24 28 28 N 1.33353 * 123.50538 * 342.42009 * 26 25 24 29 29 C 1.45757 * 124.10715 * 2.19676 * 28 26 25 30 30 H 1.08999 * 109.47041 * 65.06783 * 1 2 3 31 31 H 1.09001 * 109.46815 * 185.06087 * 1 2 3 32 32 H 1.08992 * 109.46855 * 305.06453 * 1 2 3 33 33 H 1.09004 * 109.75561 * 242.33786 * 6 5 3 34 34 H 1.08996 * 109.76210 * 3.09607 * 6 5 3 35 35 H 1.09001 * 109.39387 * 297.24652 * 7 6 5 36 36 H 1.08998 * 109.16103 * 177.75132 * 7 6 5 37 37 H 1.08992 * 110.78279 * 320.09984 * 10 8 7 38 38 H 1.09002 * 110.94070 * 196.73662 * 10 8 7 39 39 H 1.08992 * 109.90358 * 263.45731 * 11 10 8 40 40 H 1.09001 * 109.89990 * 142.22272 * 11 10 8 41 41 H 0.96997 * 120.00386 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.22696 * 352.82694 * 23 5 3 43 43 H 1.08997 * 109.23229 * 112.19042 * 23 5 3 44 44 H 1.08999 * 109.67271 * 172.04088 * 24 2 1 45 45 H 1.08998 * 109.66821 * 292.56908 * 24 2 1 46 46 H 1.09008 * 109.40384 * 288.78783 * 25 24 2 47 47 H 1.09001 * 109.40494 * 169.04580 * 25 24 2 48 48 H 0.97005 * 117.94929 * 182.21982 * 28 26 25 49 49 H 1.09001 * 109.30337 * 220.63472 * 29 28 26 50 50 H 1.09002 * 109.13344 * 101.15475 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.8101 1.7876 -0.8579 5 7 1.6316 2.2789 0.9565 6 6 0.7823 1.8333 2.0726 7 6 1.5163 2.1630 3.3778 8 6 1.8216 3.6610 3.4576 9 1 0.9321 4.2701 3.6178 10 6 2.8860 3.8341 4.5853 11 6 4.1937 3.4045 3.8836 12 7 3.9844 3.5718 2.4338 13 6 4.8877 3.2724 1.4492 14 1 4.6026 3.3569 0.4109 15 6 6.1699 2.8601 1.7855 16 7 6.4877 2.6620 3.0472 17 14 7.4442 2.5867 0.4473 18 1 8.2637 3.8145 0.2857 19 1 8.3232 1.4511 0.8254 20 1 6.7588 2.2771 -0.8332 21 6 2.6388 4.1141 2.2334 22 1 2.6990 5.2022 2.2560 23 6 2.0174 3.6943 0.9196 24 6 2.0479 -0.7306 1.2449 25 6 1.3750 -2.1037 1.3145 26 6 1.4769 -2.7908 -0.0170 27 8 1.2953 -3.9891 -0.0599 28 7 1.7568 -2.1538 -1.1546 29 6 2.0431 -0.7273 -1.2434 30 1 -0.3633 0.4332 -0.9319 31 1 -0.3633 -1.0237 0.0907 32 1 -0.3633 0.5904 0.8411 33 1 -0.1728 2.3577 2.0410 34 1 0.6157 0.7584 2.0025 35 1 2.4505 1.6030 3.4191 36 1 0.8891 1.8784 4.2226 37 1 2.6662 3.1791 5.4283 38 1 2.9444 4.8730 4.9097 39 1 4.4102 2.3604 4.1092 40 1 5.0175 4.0367 4.2149 41 1 7.3837 2.3742 3.2823 42 1 2.7377 3.8492 0.1163 43 1 1.1331 4.3027 0.7301 44 1 3.1286 -0.8542 1.1747 45 1 1.8010 -0.1553 2.1371 46 1 0.3247 -1.9794 1.5783 47 1 1.8683 -2.7106 2.0738 48 1 1.7705 -2.6721 -1.9744 49 1 1.5560 -0.3165 -2.1278 50 1 3.1204 -0.5836 -1.3260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085013313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:45 Heat of formation + Delta-G solvation = -49.028609 kcal Electronic energy + Delta-G solvation = -32436.837874 eV Core-core repulsion = 28464.091195 eV Total energy + Delta-G solvation = -3972.746680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.38161 -40.94281 -39.69260 -37.69707 -36.66070 -34.76361 -34.41395 -32.73483 -31.91743 -30.46611 -30.05239 -27.99225 -26.50326 -26.17905 -25.29178 -23.94422 -23.27663 -21.70477 -21.54135 -20.02580 -19.10627 -18.50316 -18.38231 -17.66995 -17.09271 -16.97986 -16.76332 -16.53868 -16.02053 -15.97389 -15.61576 -15.35466 -15.27014 -14.90427 -14.56433 -14.34360 -14.19517 -14.02768 -13.65721 -13.46524 -13.23930 -13.14253 -13.12279 -12.89432 -12.82594 -12.64771 -12.52854 -12.47462 -12.23368 -12.05937 -11.92373 -11.87169 -11.59012 -11.31443 -11.19529 -11.05000 -10.82941 -10.64239 -10.44584 -10.15752 -9.42694 -8.76242 -7.82558 -5.10703 1.35659 1.37554 1.47472 1.55202 1.71540 2.01066 2.39072 2.48786 3.28757 3.36995 3.45530 3.56838 3.62272 3.65550 3.89986 3.94222 3.99685 4.10391 4.17066 4.31882 4.32965 4.47009 4.52795 4.54272 4.61508 4.64679 4.68817 4.73031 4.76595 4.79615 4.84091 4.89607 4.94361 4.96259 5.07155 5.15599 5.20304 5.21995 5.28752 5.38462 5.59925 5.70619 5.71668 5.76846 5.77810 5.85333 6.23928 6.26381 6.61873 7.12638 7.18061 7.33064 7.87089 8.50058 9.28558 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.005313 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.705150 B = 5269.281388 C = 6391.919039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C 0.525 3.475 4 O -0.584 6.584 5 N -0.589 5.589 6 C 0.086 3.914 7 C -0.124 4.124 8 C -0.084 4.084 9 H 0.123 0.877 10 C -0.131 4.131 11 C 0.186 3.814 12 N -0.603 5.603 13 C -0.195 4.195 14 H 0.071 0.929 15 C -0.065 4.065 16 N -0.949 5.949 17 Si 0.948 3.052 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.283 1.283 21 C 0.141 3.859 22 H 0.022 0.978 23 C 0.117 3.883 24 C -0.119 4.119 25 C -0.124 4.124 26 C 0.518 3.482 27 O -0.603 6.603 28 N -0.705 5.705 29 C 0.136 3.864 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.005 0.995 40 H -0.004 1.004 41 H 0.240 0.760 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.107 0.893 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.406 0.594 49 H 0.098 0.902 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.647 -2.867 -0.115 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 C 0.313 3.687 4 O -0.464 6.464 5 N -0.319 5.319 6 C -0.035 4.035 7 C -0.162 4.162 8 C -0.103 4.103 9 H 0.140 0.860 10 C -0.169 4.169 11 C 0.061 3.939 12 N -0.328 5.328 13 C -0.325 4.325 14 H 0.088 0.912 15 C -0.257 4.257 16 N -0.600 5.600 17 Si 0.779 3.221 18 H -0.216 1.216 19 H -0.224 1.224 20 H -0.209 1.209 21 C 0.034 3.966 22 H 0.039 0.961 23 C -0.007 4.007 24 C -0.157 4.157 25 C -0.164 4.164 26 C 0.306 3.694 27 O -0.485 6.485 28 N -0.355 5.355 29 C 0.011 3.989 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.015 0.985 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.242 0.758 49 H 0.116 0.884 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.117 -3.193 -0.418 20.373 hybrid contribution 2.369 -0.103 -1.180 2.648 sum -17.749 -3.295 -1.598 18.123 Atomic orbital electron populations 1.22323 0.88911 1.04547 1.05138 1.20910 0.99962 0.90994 0.96898 1.20521 0.79741 0.87346 0.81080 1.90694 1.35999 1.79106 1.40626 1.47817 1.50369 1.08895 1.24867 1.22729 0.93813 1.02748 0.84201 1.21956 1.00433 0.95384 0.98380 1.22430 0.97334 0.97266 0.93255 0.85956 1.23033 0.94974 1.01053 0.97873 1.20963 0.93503 0.96527 0.82928 1.44458 1.11739 1.74446 1.02149 1.19121 0.90745 1.34894 0.87696 0.91171 1.25266 0.99132 1.03906 0.97433 1.70138 1.18929 1.55096 1.15833 0.85474 0.80150 0.76886 0.79563 1.21618 1.22418 1.20876 1.21010 0.85451 0.95544 0.94564 0.96053 1.21255 0.99515 0.81737 0.98207 1.21940 0.99908 0.95935 0.97883 1.21721 1.05860 0.95226 0.93555 1.20632 0.74591 0.86802 0.87331 1.90736 1.53296 1.16754 1.87761 1.45377 1.70064 1.09897 1.10196 1.21128 1.00450 0.79151 0.98151 0.91120 0.90104 0.88046 0.87346 0.86374 0.94394 0.87770 0.89989 0.91804 0.97673 0.98525 0.95021 0.93016 0.88621 0.93628 0.87478 0.84245 0.87289 0.75769 0.88376 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 7.62 71.98 0.55 -1.58 16 2 C -0.08 -1.91 0.49 -52.84 -0.03 -1.94 16 3 C 0.53 16.78 6.50 87.66 0.57 17.35 16 4 O -0.58 -24.87 15.17 -3.06 -0.05 -24.92 16 5 N -0.59 -16.47 2.95 -822.13 -2.43 -18.90 16 6 C 0.09 1.52 3.99 86.37 0.34 1.87 16 7 C -0.12 -2.75 4.78 30.74 0.15 -2.60 16 8 C -0.08 -2.14 3.68 -9.37 -0.03 -2.17 16 9 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 10 C -0.13 -4.13 6.33 32.16 0.20 -3.92 16 11 C 0.19 8.69 4.61 86.71 0.40 9.09 16 12 N -0.60 -28.98 3.20 -674.11 -2.15 -31.14 16 13 C -0.19 -10.95 9.71 84.04 0.82 -10.13 16 14 H 0.07 4.11 6.39 -2.91 -0.02 4.09 16 15 C -0.06 -3.84 5.49 84.86 0.47 -3.38 16 16 N -0.95 -58.18 10.41 21.65 0.23 -57.95 16 17 Si 0.95 49.55 29.56 68.60 2.03 51.58 16 18 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 19 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 20 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 21 C 0.14 5.01 2.97 44.77 0.13 5.14 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 C 0.12 3.76 5.68 85.77 0.49 4.25 16 24 C -0.12 -2.73 4.58 30.74 0.14 -2.59 16 25 C -0.12 -2.32 5.39 29.71 0.16 -2.16 16 26 C 0.52 12.74 6.95 87.71 0.61 13.35 16 27 O -0.60 -19.39 17.78 -3.02 -0.05 -19.45 16 28 N -0.71 -15.49 5.35 -467.31 -2.50 -18.00 16 29 C 0.14 3.26 5.32 86.49 0.46 3.72 16 30 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.08 0.96 5.61 -2.39 -0.01 0.95 16 32 H 0.10 1.02 4.58 -2.39 -0.01 1.01 16 33 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 34 H 0.12 1.64 2.80 -2.39 -0.01 1.64 16 35 H 0.04 1.21 6.58 -2.39 -0.02 1.20 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.01 0.27 7.19 -2.39 -0.02 0.25 16 40 H 0.00 -0.19 7.44 -2.39 -0.02 -0.21 16 41 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.05 2.15 5.51 -2.39 -0.01 2.14 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.04 1.40 8.13 -2.39 -0.02 1.38 16 45 H 0.11 2.24 4.55 -2.39 -0.01 2.23 16 46 H 0.14 1.63 6.85 -2.38 -0.02 1.62 16 47 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.41 7.95 8.80 -92.70 -0.82 7.13 16 49 H 0.10 2.05 8.11 -2.39 -0.02 2.03 16 50 H 0.05 1.56 7.70 -2.39 -0.02 1.54 16 Total: -1.00 -82.53 361.45 0.66 -81.88 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.16 Total: 12.61 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 5.43 Total: 24.29 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -6.86 Total: -125.98 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.10 Total: -44.37 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.03 Total: 51.58 kcal Total: -82.53 0.66 -81.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085013313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.847 kcal (2) G-P(sol) polarization free energy of solvation -82.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds