Wall clock time and date at job start Tue Mar 31 2020 19:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.60093 * 2 1 4 4 O 1.21279 * 119.99706 * 123.08506 * 3 2 1 5 5 N 1.34775 * 120.00069 * 303.09155 * 3 2 1 6 6 C 1.47154 * 121.21943 * 354.75720 * 5 3 2 7 7 C 1.52832 * 107.97751 * 122.68482 * 6 5 3 8 8 C 1.53099 * 110.58000 * 57.35061 * 7 6 5 9 9 H 1.08997 * 112.49280 * 70.55726 * 8 7 6 10 10 C 1.56020 * 106.39552 * 195.43454 * 8 7 6 11 11 C 1.54501 * 102.61608 * 78.38626 * 10 8 7 12 12 N 1.47433 * 107.14801 * 22.84820 * 11 10 8 13 13 C 1.36939 * 126.06113 * 181.61554 * 12 11 10 14 14 H 1.07995 * 120.00167 * 179.97438 * 13 12 11 15 15 C 1.38818 * 120.00061 * 0.02562 * 13 12 11 16 16 N 1.31618 * 119.99605 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46957 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47290 * 119.99894 * 17 15 13 20 20 H 1.48498 * 109.46920 * 239.99823 * 17 15 13 21 21 C 1.46468 * 107.87890 * 1.61460 * 12 11 10 22 22 H 1.09001 * 107.85594 * 89.64135 * 21 12 11 23 23 C 1.46765 * 121.21415 * 174.73659 * 5 3 2 24 24 C 1.53346 * 109.73857 * 239.59456 * 2 1 3 25 25 C 1.53061 * 108.43621 * 172.64473 * 24 2 1 26 26 C 1.50175 * 109.89080 * 48.88982 * 25 24 2 27 27 O 1.21277 * 118.24666 * 162.43800 * 26 25 24 28 28 N 1.33353 * 123.51117 * 342.40967 * 26 25 24 29 29 C 1.45759 * 124.10382 * 2.25262 * 28 26 25 30 30 H 1.09004 * 109.47250 * 64.91588 * 1 2 3 31 31 H 1.09003 * 109.47121 * 184.91358 * 1 2 3 32 32 H 1.09003 * 109.47242 * 304.91304 * 1 2 3 33 33 H 1.08999 * 109.75711 * 242.30717 * 6 5 3 34 34 H 1.08996 * 109.75799 * 3.06380 * 6 5 3 35 35 H 1.09001 * 109.25527 * 177.63101 * 7 6 5 36 36 H 1.08995 * 109.25607 * 297.10383 * 7 6 5 37 37 H 1.08997 * 110.78140 * 196.67214 * 10 8 7 38 38 H 1.09007 * 110.78293 * 320.10935 * 10 8 7 39 39 H 1.09007 * 109.89775 * 142.22765 * 11 10 8 40 40 H 1.09003 * 109.90807 * 263.28283 * 11 10 8 41 41 H 0.97002 * 120.00025 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.22386 * 112.23544 * 23 5 3 43 43 H 1.08993 * 109.22998 * 352.86927 * 23 5 3 44 44 H 1.09001 * 109.67159 * 292.36639 * 24 2 1 45 45 H 1.08998 * 109.67137 * 52.89710 * 24 2 1 46 46 H 1.09000 * 109.40049 * 288.75801 * 25 24 2 47 47 H 1.08998 * 109.39430 * 169.01429 * 25 24 2 48 48 H 0.96994 * 117.94900 * 182.22393 * 28 26 25 49 49 H 1.09001 * 109.29706 * 220.58421 * 29 28 26 50 50 H 1.08998 * 109.30136 * 101.21142 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7791 1.7985 0.8800 5 7 1.6613 2.2683 -0.9779 6 6 0.8539 1.8086 -2.1190 7 6 -0.4216 2.6493 -2.1635 8 6 -0.0813 4.1382 -2.2697 9 1 0.3281 4.4039 -3.2443 10 6 -1.3858 4.9149 -1.9102 11 6 -1.4148 4.8301 -0.3678 12 7 -0.0303 4.5936 0.0806 13 6 0.3796 4.4247 1.3762 14 1 1.4237 4.2561 1.5946 15 6 -0.5471 4.4692 2.4089 16 7 -1.8196 4.6742 2.1426 17 14 0.0122 4.2395 4.1763 18 1 1.4815 4.0269 4.2068 19 1 -0.3296 5.4504 4.9650 20 1 -0.6707 3.0582 4.7620 21 6 0.8288 4.5712 -1.1054 22 1 1.1664 5.5906 -1.2928 23 6 2.0438 3.6848 -0.9432 24 6 2.0479 -0.7305 -1.2448 25 6 3.5669 -0.5546 -1.3124 26 6 4.1788 -0.8809 0.0196 27 8 5.3691 -1.1090 0.0641 28 7 3.4835 -0.9327 1.1564 29 6 2.0431 -0.7273 1.2434 30 1 -0.3634 0.4357 -0.9308 31 1 -0.3633 -1.0239 0.0880 32 1 -0.3634 0.5882 0.8427 33 1 1.4149 1.9407 -3.0442 34 1 0.5979 0.7571 -1.9894 35 1 -1.0168 2.3541 -3.0276 36 1 -0.9977 2.4768 -1.2544 37 1 -1.3217 5.9520 -2.2394 38 1 -2.2590 4.4246 -2.3408 39 1 -1.7847 5.7673 0.0484 40 1 -2.0554 4.0062 -0.0533 41 1 -2.4673 4.7049 2.8641 42 1 2.7459 3.8868 -1.7521 43 1 2.5234 3.9039 0.0107 44 1 1.8042 -1.7907 -1.1761 45 1 1.5891 -0.3051 -2.1374 46 1 3.8006 0.4771 -1.5753 47 1 3.9751 -1.2218 -2.0715 48 1 3.9664 -1.1192 1.9766 49 1 1.8169 -0.1321 2.1281 50 1 1.5457 -1.6937 1.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085013314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:50 Heat of formation + Delta-G solvation = -24.667458 kcal Electronic energy + Delta-G solvation = -32811.350770 eV Core-core repulsion = 28839.660469 eV Total energy + Delta-G solvation = -3971.690301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.28918 -39.52627 -38.21838 -36.27216 -35.28971 -33.40277 -32.84229 -31.55413 -31.02765 -29.12041 -28.48292 -26.23694 -24.93919 -24.63037 -24.19503 -22.61463 -22.19271 -20.66555 -20.01544 -18.85510 -17.95293 -17.13788 -16.60695 -16.43027 -15.97222 -15.72789 -15.36852 -15.09768 -14.72999 -14.47894 -14.13690 -13.92730 -13.79102 -13.59525 -13.26539 -13.10423 -12.84450 -12.70146 -12.42183 -12.29598 -12.10193 -11.96337 -11.61351 -11.47329 -11.42363 -11.35345 -10.98710 -10.92988 -10.84862 -10.77278 -10.61846 -10.11480 -9.90478 -9.86169 -9.70637 -9.64011 -9.52479 -9.20481 -8.93729 -8.57839 -8.14451 -6.80099 -5.68723 -3.00325 2.75381 3.00809 3.34190 3.41064 3.43024 3.48922 3.54954 4.30967 4.40656 4.53320 4.55251 4.62720 4.86101 4.95210 5.07746 5.21530 5.26063 5.28969 5.41797 5.44915 5.48187 5.51911 5.57250 5.62215 5.66066 5.69094 5.69878 5.74134 5.83094 5.91953 5.96023 6.05881 6.09427 6.22763 6.26801 6.30187 6.40769 6.44799 6.59497 6.70927 6.83936 6.89281 7.05911 7.42384 7.58608 7.60734 7.85230 7.87490 8.26015 8.30295 8.62160 9.25379 9.85973 10.50828 11.43463 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.005708 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.301910 B = 4903.850703 C = 6199.102806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C 0.533 3.467 4 O -0.529 6.529 5 N -0.589 5.589 6 C 0.087 3.913 7 C -0.125 4.125 8 C -0.100 4.100 9 H 0.075 0.925 10 C -0.144 4.144 11 C 0.179 3.821 12 N -0.588 5.588 13 C -0.211 4.211 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.153 3.847 22 H 0.026 0.974 23 C 0.114 3.886 24 C -0.123 4.123 25 C -0.138 4.138 26 C 0.526 3.474 27 O -0.569 6.569 28 N -0.704 5.704 29 C 0.134 3.866 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.249 0.751 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.400 0.600 49 H 0.088 0.912 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -10.695 -11.740 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 C 0.320 3.680 4 O -0.405 6.405 5 N -0.321 5.321 6 C -0.036 4.036 7 C -0.163 4.163 8 C -0.120 4.120 9 H 0.093 0.907 10 C -0.182 4.182 11 C 0.054 3.946 12 N -0.313 5.313 13 C -0.339 4.339 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.573 5.573 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.220 1.220 21 C 0.045 3.955 22 H 0.043 0.957 23 C -0.009 4.009 24 C -0.161 4.161 25 C -0.178 4.178 26 C 0.313 3.687 27 O -0.449 6.449 28 N -0.354 5.354 29 C 0.009 3.991 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.235 0.765 49 H 0.106 0.894 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.903 -10.545 -11.197 15.498 hybrid contribution 0.066 0.094 1.350 1.355 sum 1.969 -10.451 -9.847 14.493 Atomic orbital electron populations 1.22124 0.90833 1.02914 1.05103 1.21126 0.98488 0.93640 0.96663 1.19929 0.80534 0.86383 0.81175 1.90712 1.35986 1.77564 1.36246 1.47675 1.52729 1.09226 1.22488 1.22311 0.92697 0.99739 0.88843 1.21891 0.96780 0.94919 1.02757 1.22347 0.97242 0.94830 0.97591 0.90709 1.23159 0.96180 0.98719 1.00135 1.21200 0.86572 1.00314 0.86473 1.44280 1.02406 1.84146 1.00499 1.19063 0.93268 1.40808 0.80776 0.90182 1.24681 0.95482 1.02590 0.97573 1.69964 1.00358 1.56853 1.30129 0.86166 0.78043 0.77180 0.85368 1.20306 1.21997 1.21994 1.20715 0.90818 0.95529 0.88439 0.95668 1.21386 0.96997 0.79657 1.02843 1.22091 0.94749 1.01519 0.97694 1.21653 0.95963 1.04808 0.95359 1.19965 0.86664 0.75766 0.86327 1.90724 1.15811 1.50998 1.87337 1.45217 1.09043 1.71350 1.09820 1.21241 0.80105 0.99462 0.98316 0.89998 0.91558 0.90462 0.91906 0.88240 0.92079 0.89840 0.92786 0.92305 0.94221 0.93693 0.94096 0.92909 0.88810 0.89981 0.88891 0.88316 0.87959 0.76510 0.89373 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.14 37.16 0.30 -1.46 16 2 C -0.10 -1.19 0.50 -155.52 -0.08 -1.27 16 3 C 0.53 8.97 4.79 -10.99 -0.05 8.92 16 4 O -0.53 -11.23 14.80 5.56 0.08 -11.15 16 5 N -0.59 -9.22 2.96 -174.10 -0.52 -9.73 16 6 C 0.09 1.02 4.60 -3.77 -0.02 1.00 16 7 C -0.13 -1.68 4.63 -26.77 -0.12 -1.80 16 8 C -0.10 -1.52 3.68 -88.43 -0.33 -1.84 16 9 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 10 C -0.14 -2.42 6.33 -24.33 -0.15 -2.58 16 11 C 0.18 4.03 4.61 -2.74 -0.01 4.02 16 12 N -0.59 -13.73 3.20 -164.41 -0.53 -14.26 16 13 C -0.21 -5.64 9.70 -15.06 -0.15 -5.79 16 14 H 0.08 2.23 6.51 -52.49 -0.34 1.89 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.38 10.38 55.49 0.58 -25.81 16 17 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 C 0.15 2.88 2.97 -68.30 -0.20 2.68 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 23 C 0.11 2.03 5.67 -4.77 -0.03 2.00 16 24 C -0.12 -1.16 4.61 -26.52 -0.12 -1.29 16 25 C -0.14 -1.62 5.50 -28.11 -0.15 -1.78 16 26 C 0.53 8.01 7.30 -11.87 -0.09 7.92 16 27 O -0.57 -10.78 17.78 5.56 0.10 -10.68 16 28 N -0.70 -9.65 4.94 -61.39 -0.30 -9.95 16 29 C 0.13 1.65 5.40 -4.49 -0.02 1.63 16 30 H 0.08 0.90 4.00 -51.93 -0.21 0.69 16 31 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.96 2.31 -51.93 -0.12 0.84 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.40 6.39 -51.93 -0.33 1.07 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 39 H 0.04 1.02 7.57 -51.92 -0.39 0.63 16 40 H 0.04 1.12 7.05 -51.93 -0.37 0.76 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 2.01 5.57 -51.93 -0.29 1.72 16 44 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 45 H 0.09 0.72 4.99 -51.93 -0.26 0.46 16 46 H 0.10 1.28 7.43 -51.93 -0.39 0.90 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.40 5.22 8.80 -40.82 -0.36 4.86 16 49 H 0.09 1.26 7.86 -51.93 -0.41 0.85 16 50 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -34.32 363.08 -9.12 -43.44 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.66 Total: 5.01 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.32 Total: 10.05 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.77 Total: -59.75 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.18 Total: -21.83 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.32 -9.12 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085013314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.768 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds