Wall clock time and date at job start Tue Mar 31 2020 19:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.60093 * 2 1 4 4 O 1.21279 * 119.99706 * 123.08506 * 3 2 1 5 5 N 1.34775 * 120.00069 * 303.09155 * 3 2 1 6 6 C 1.47154 * 121.21943 * 354.75720 * 5 3 2 7 7 C 1.52832 * 107.97751 * 122.68482 * 6 5 3 8 8 C 1.53099 * 110.58000 * 57.35061 * 7 6 5 9 9 H 1.08997 * 112.49280 * 70.55726 * 8 7 6 10 10 C 1.56020 * 106.39552 * 195.43454 * 8 7 6 11 11 C 1.54501 * 102.61608 * 78.38626 * 10 8 7 12 12 N 1.47433 * 107.14801 * 22.84820 * 11 10 8 13 13 C 1.36939 * 126.06113 * 181.61554 * 12 11 10 14 14 H 1.07995 * 120.00167 * 179.97438 * 13 12 11 15 15 C 1.38818 * 120.00061 * 0.02562 * 13 12 11 16 16 N 1.31618 * 119.99605 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46957 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47290 * 119.99894 * 17 15 13 20 20 H 1.48498 * 109.46920 * 239.99823 * 17 15 13 21 21 C 1.46468 * 107.87890 * 1.61460 * 12 11 10 22 22 H 1.09001 * 107.85594 * 89.64135 * 21 12 11 23 23 C 1.46765 * 121.21415 * 174.73659 * 5 3 2 24 24 C 1.53346 * 109.73857 * 239.59456 * 2 1 3 25 25 C 1.53061 * 108.43621 * 172.64473 * 24 2 1 26 26 C 1.50175 * 109.89080 * 48.88982 * 25 24 2 27 27 O 1.21277 * 118.24666 * 162.43800 * 26 25 24 28 28 N 1.33353 * 123.51117 * 342.40967 * 26 25 24 29 29 C 1.45759 * 124.10382 * 2.25262 * 28 26 25 30 30 H 1.09004 * 109.47250 * 64.91588 * 1 2 3 31 31 H 1.09003 * 109.47121 * 184.91358 * 1 2 3 32 32 H 1.09003 * 109.47242 * 304.91304 * 1 2 3 33 33 H 1.08999 * 109.75711 * 242.30717 * 6 5 3 34 34 H 1.08996 * 109.75799 * 3.06380 * 6 5 3 35 35 H 1.09001 * 109.25527 * 177.63101 * 7 6 5 36 36 H 1.08995 * 109.25607 * 297.10383 * 7 6 5 37 37 H 1.08997 * 110.78140 * 196.67214 * 10 8 7 38 38 H 1.09007 * 110.78293 * 320.10935 * 10 8 7 39 39 H 1.09007 * 109.89775 * 142.22765 * 11 10 8 40 40 H 1.09003 * 109.90807 * 263.28283 * 11 10 8 41 41 H 0.97002 * 120.00025 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.22386 * 112.23544 * 23 5 3 43 43 H 1.08993 * 109.22998 * 352.86927 * 23 5 3 44 44 H 1.09001 * 109.67159 * 292.36639 * 24 2 1 45 45 H 1.08998 * 109.67137 * 52.89710 * 24 2 1 46 46 H 1.09000 * 109.40049 * 288.75801 * 25 24 2 47 47 H 1.08998 * 109.39430 * 169.01429 * 25 24 2 48 48 H 0.96994 * 117.94900 * 182.22393 * 28 26 25 49 49 H 1.09001 * 109.29706 * 220.58421 * 29 28 26 50 50 H 1.08998 * 109.30136 * 101.21142 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7791 1.7985 0.8800 5 7 1.6613 2.2683 -0.9779 6 6 0.8539 1.8086 -2.1190 7 6 -0.4216 2.6493 -2.1635 8 6 -0.0813 4.1382 -2.2697 9 1 0.3281 4.4039 -3.2443 10 6 -1.3858 4.9149 -1.9102 11 6 -1.4148 4.8301 -0.3678 12 7 -0.0303 4.5936 0.0806 13 6 0.3796 4.4247 1.3762 14 1 1.4237 4.2561 1.5946 15 6 -0.5471 4.4692 2.4089 16 7 -1.8196 4.6742 2.1426 17 14 0.0122 4.2395 4.1763 18 1 1.4815 4.0269 4.2068 19 1 -0.3296 5.4504 4.9650 20 1 -0.6707 3.0582 4.7620 21 6 0.8288 4.5712 -1.1054 22 1 1.1664 5.5906 -1.2928 23 6 2.0438 3.6848 -0.9432 24 6 2.0479 -0.7305 -1.2448 25 6 3.5669 -0.5546 -1.3124 26 6 4.1788 -0.8809 0.0196 27 8 5.3691 -1.1090 0.0641 28 7 3.4835 -0.9327 1.1564 29 6 2.0431 -0.7273 1.2434 30 1 -0.3634 0.4357 -0.9308 31 1 -0.3633 -1.0239 0.0880 32 1 -0.3634 0.5882 0.8427 33 1 1.4149 1.9407 -3.0442 34 1 0.5979 0.7571 -1.9894 35 1 -1.0168 2.3541 -3.0276 36 1 -0.9977 2.4768 -1.2544 37 1 -1.3217 5.9520 -2.2394 38 1 -2.2590 4.4246 -2.3408 39 1 -1.7847 5.7673 0.0484 40 1 -2.0554 4.0062 -0.0533 41 1 -2.4673 4.7049 2.8641 42 1 2.7459 3.8868 -1.7521 43 1 2.5234 3.9039 0.0107 44 1 1.8042 -1.7907 -1.1761 45 1 1.5891 -0.3051 -2.1374 46 1 3.8006 0.4771 -1.5753 47 1 3.9751 -1.2218 -2.0715 48 1 3.9664 -1.1192 1.9766 49 1 1.8169 -0.1321 2.1281 50 1 1.5457 -1.6937 1.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085013314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:49 Heat of formation + Delta-G solvation = -50.325733 kcal Electronic energy + Delta-G solvation = -32812.463396 eV Core-core repulsion = 28839.660469 eV Total energy + Delta-G solvation = -3972.802927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.41476 -40.80783 -39.59775 -37.48466 -36.68919 -34.79628 -34.33828 -32.83036 -32.29363 -30.59864 -30.07771 -27.26843 -26.54227 -25.99575 -25.37099 -23.84171 -23.34817 -21.83330 -21.70491 -20.18491 -19.18182 -18.43553 -18.25780 -17.61235 -17.11761 -16.92803 -16.78019 -16.52210 -16.09958 -15.94788 -15.68122 -15.30591 -15.02266 -14.62726 -14.46899 -14.33061 -14.19408 -13.95164 -13.79246 -13.43930 -13.31488 -13.24684 -13.10010 -13.00329 -12.85155 -12.65204 -12.54186 -12.35513 -12.24948 -12.06588 -11.90481 -11.75101 -11.64508 -11.34897 -11.21194 -11.07857 -10.77593 -10.66625 -10.42315 -10.06502 -9.41473 -8.78452 -7.84089 -5.12825 1.32436 1.35573 1.46187 1.60839 1.76766 2.19094 2.36886 2.45978 3.31850 3.34584 3.45003 3.55959 3.63671 3.71440 3.89291 3.96997 3.97419 4.15478 4.31218 4.35718 4.39814 4.45744 4.49817 4.56501 4.64048 4.66465 4.67597 4.73091 4.77467 4.79641 4.82205 4.89209 4.95449 5.05170 5.06864 5.15132 5.19444 5.21395 5.36514 5.38182 5.54120 5.71243 5.72711 5.77215 5.77812 5.85407 6.24322 6.34231 6.65432 7.16440 7.16874 7.37217 7.84384 8.47567 9.26408 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.005708 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.301910 B = 4903.850703 C = 6199.102806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C 0.520 3.480 4 O -0.589 6.589 5 N -0.590 5.590 6 C 0.082 3.918 7 C -0.123 4.123 8 C -0.083 4.083 9 H 0.119 0.881 10 C -0.130 4.130 11 C 0.187 3.813 12 N -0.602 5.602 13 C -0.197 4.197 14 H 0.060 0.940 15 C -0.058 4.058 16 N -0.945 5.945 17 Si 0.948 3.052 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.143 3.857 22 H 0.017 0.983 23 C 0.119 3.881 24 C -0.111 4.111 25 C -0.134 4.134 26 C 0.515 3.485 27 O -0.617 6.617 28 N -0.703 5.703 29 C 0.130 3.870 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.085 0.915 39 H -0.007 1.007 40 H 0.014 0.986 41 H 0.243 0.757 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.085 0.915 47 H 0.128 0.872 48 H 0.397 0.603 49 H 0.057 0.943 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -13.086 -16.015 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C 0.308 3.692 4 O -0.470 6.470 5 N -0.321 5.321 6 C -0.038 4.038 7 C -0.161 4.161 8 C -0.103 4.103 9 H 0.137 0.863 10 C -0.168 4.168 11 C 0.062 3.938 12 N -0.327 5.327 13 C -0.327 4.327 14 H 0.078 0.922 15 C -0.251 4.251 16 N -0.596 5.596 17 Si 0.779 3.221 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.216 1.216 21 C 0.036 3.964 22 H 0.035 0.965 23 C -0.005 4.005 24 C -0.148 4.148 25 C -0.173 4.173 26 C 0.303 3.697 27 O -0.501 6.501 28 N -0.351 5.351 29 C 0.006 3.994 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.011 0.989 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.103 0.897 47 H 0.146 0.854 48 H 0.232 0.768 49 H 0.075 0.925 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.946 -12.936 -15.521 20.227 hybrid contribution 0.406 0.932 2.720 2.904 sum 1.353 -12.004 -12.801 17.602 Atomic orbital electron populations 1.22093 0.89786 1.04642 1.03675 1.21181 0.98965 0.90845 0.98498 1.20859 0.79677 0.88305 0.80309 1.90685 1.38765 1.79022 1.38494 1.47838 1.52736 1.08054 1.23481 1.22705 0.91783 1.00777 0.88581 1.21886 0.97650 0.93787 1.02796 1.22397 0.94545 0.95908 0.97418 0.86315 1.23024 0.98578 1.00132 0.95052 1.20962 0.85441 0.96617 0.90768 1.44425 1.03850 1.83650 1.00763 1.19004 0.92178 1.38667 0.82887 0.92232 1.25185 0.95829 1.04046 1.00036 1.70126 1.00709 1.58575 1.30148 0.85438 0.76819 0.77004 0.82804 1.21439 1.21976 1.21638 1.21001 0.91540 0.95586 0.88308 0.96539 1.21154 0.96687 0.81282 1.01375 1.22164 0.92689 1.03319 0.96641 1.21685 0.97640 1.04464 0.93512 1.20724 0.86242 0.74898 0.87805 1.90693 1.17880 1.53367 1.88180 1.45328 1.09751 1.70267 1.09709 1.21413 0.79522 1.01063 0.97410 0.88819 0.87564 0.95134 0.88043 0.85662 0.87602 0.93801 0.91993 0.89621 0.98852 0.96797 0.94786 0.89703 0.93821 0.86473 0.85988 0.89671 0.85356 0.76827 0.92475 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.14 71.98 0.59 -2.37 16 2 C -0.09 -2.06 0.50 -52.84 -0.03 -2.09 16 3 C 0.52 17.38 4.79 87.66 0.42 17.80 16 4 O -0.59 -26.44 14.80 -3.03 -0.04 -26.48 16 5 N -0.59 -17.48 2.96 -823.11 -2.44 -19.92 16 6 C 0.08 1.50 4.60 86.20 0.40 1.90 16 7 C -0.12 -2.71 4.63 30.57 0.14 -2.57 16 8 C -0.08 -2.18 3.68 -9.38 -0.03 -2.22 16 9 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 10 C -0.13 -4.06 6.33 32.15 0.20 -3.85 16 11 C 0.19 8.63 4.61 86.71 0.40 9.03 16 12 N -0.60 -29.06 3.20 -674.08 -2.15 -31.21 16 13 C -0.20 -11.17 9.70 84.03 0.81 -10.35 16 14 H 0.06 3.58 6.51 -2.91 -0.02 3.57 16 15 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 16 N -0.94 -56.66 10.38 21.65 0.22 -56.44 16 17 Si 0.95 49.16 29.55 68.60 2.03 51.19 16 18 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 19 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 20 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 21 C 0.14 5.26 2.97 44.77 0.13 5.39 16 22 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 23 C 0.12 4.18 5.67 85.76 0.49 4.67 16 24 C -0.11 -1.54 4.61 30.73 0.14 -1.40 16 25 C -0.13 -2.72 5.50 29.70 0.16 -2.56 16 26 C 0.51 15.30 7.30 87.71 0.64 15.94 16 27 O -0.62 -23.67 17.78 -3.02 -0.05 -23.73 16 28 N -0.70 -19.15 4.94 -467.32 -2.31 -21.45 16 29 C 0.13 3.08 5.40 86.49 0.47 3.55 16 30 H 0.09 1.67 4.00 -2.39 -0.01 1.66 16 31 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 1.65 2.31 -2.39 -0.01 1.64 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.36 6.39 -2.39 -0.02 1.34 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 2.26 7.97 -2.38 -0.02 2.24 16 39 H -0.01 -0.37 7.57 -2.38 -0.02 -0.39 16 40 H 0.01 0.72 7.05 -2.39 -0.02 0.70 16 41 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.04 1.98 5.57 -2.39 -0.01 1.96 16 44 H 0.12 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.12 1.02 4.99 -2.39 -0.01 1.01 16 46 H 0.09 2.02 7.43 -2.39 -0.02 2.00 16 47 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.40 10.79 8.80 -92.71 -0.82 9.97 16 49 H 0.06 1.71 7.86 -2.39 -0.02 1.69 16 50 H 0.12 1.76 8.09 -2.39 -0.02 1.74 16 Total: -1.00 -86.25 363.08 0.81 -85.44 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.16 Total: 14.65 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 5.40 Total: 27.95 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -6.67 Total: -129.02 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.10 Total: -50.21 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -86.25 0.81 -85.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085013314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.115 kcal (2) G-P(sol) polarization free energy of solvation -86.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds