Wall clock time and date at job start Tue Mar 31 2020 19:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.66998 * 2 1 4 4 O 1.21281 * 120.00071 * 114.85294 * 3 2 1 5 5 N 1.34779 * 119.99910 * 294.84600 * 3 2 1 6 6 C 1.47755 * 125.81911 * 174.01763 * 5 3 2 7 7 C 1.55965 * 104.12186 * 154.37442 * 6 5 3 8 8 H 1.09000 * 113.99853 * 161.08759 * 7 6 5 9 9 C 1.52876 * 106.49175 * 286.21164 * 7 6 5 10 10 C 1.51605 * 111.55382 * 168.38670 * 9 7 6 11 11 N 1.44324 * 113.11418 * 320.90424 * 10 9 7 12 12 C 1.36939 * 116.35649 * 187.25844 * 11 10 9 13 13 H 1.08002 * 119.99536 * 155.08552 * 12 11 10 14 14 C 1.38803 * 120.00002 * 335.08576 * 12 11 10 15 15 N 1.31617 * 120.00339 * 5.00599 * 14 12 11 16 16 Si 1.86804 * 119.99843 * 185.00768 * 14 12 11 17 17 H 1.48494 * 109.47300 * 90.00119 * 16 14 12 18 18 H 1.48502 * 109.47089 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.47043 * 329.99774 * 16 14 12 20 20 C 1.43997 * 127.28721 * 7.29122 * 11 10 9 21 21 C 1.49950 * 116.10049 * 2.47666 * 20 11 10 22 22 H 1.08999 * 108.82720 * 141.05008 * 21 20 11 23 23 C 1.47621 * 125.81824 * 354.33362 * 5 3 2 24 24 C 1.53342 * 109.70436 * 120.51534 * 2 1 3 25 25 C 1.52908 * 108.68435 * 52.23190 * 24 2 1 26 26 N 1.45754 * 110.49670 * 50.72680 * 25 24 2 27 27 C 1.33350 * 124.10597 * 340.95610 * 26 25 24 28 28 O 1.21277 * 118.24843 * 182.18212 * 27 26 25 29 29 C 1.50178 * 123.50827 * 2.20605 * 27 26 25 30 30 H 1.08998 * 109.47616 * 65.00341 * 1 2 3 31 31 H 1.09002 * 109.47456 * 185.00685 * 1 2 3 32 32 H 1.09004 * 109.46889 * 305.00184 * 1 2 3 33 33 H 1.08996 * 110.50185 * 273.03368 * 6 5 3 34 34 H 1.08996 * 110.49730 * 35.72009 * 6 5 3 35 35 H 1.08993 * 109.06821 * 47.84582 * 9 7 6 36 36 H 1.09000 * 108.99910 * 288.87193 * 9 7 6 37 37 H 1.09009 * 108.75426 * 199.97568 * 10 9 7 38 38 H 1.08993 * 108.75972 * 81.85100 * 10 9 7 39 39 H 0.97003 * 120.00568 * 179.97438 * 15 14 12 40 40 H 1.09007 * 108.15563 * 240.75133 * 20 11 10 41 41 H 1.08999 * 107.99925 * 124.07506 * 20 11 10 42 42 H 1.09003 * 110.07645 * 299.58838 * 23 5 3 43 43 H 1.08995 * 110.08168 * 61.14422 * 23 5 3 44 44 H 1.09004 * 109.60714 * 171.97311 * 24 2 1 45 45 H 1.08998 * 109.60607 * 292.46317 * 24 2 1 46 46 H 1.08993 * 109.28952 * 290.41489 * 25 24 2 47 47 H 1.09007 * 109.14102 * 170.94044 * 25 24 2 48 48 H 0.96998 * 117.94735 * 160.93968 * 26 25 24 49 49 H 1.09004 * 109.40097 * 222.28788 * 29 27 26 50 50 H 1.09004 * 109.33249 * 102.49965 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.6571 1.8415 0.9530 5 7 1.8023 2.2187 -1.0592 6 6 2.1279 3.6573 -1.1456 7 6 2.2909 3.9194 -2.6745 8 1 2.2121 4.9697 -2.9551 9 6 3.6250 3.2941 -3.0821 10 6 3.7728 3.2306 -4.5896 11 7 2.5450 2.8853 -5.2652 12 6 2.6356 2.6584 -6.6127 13 1 1.9076 2.0304 -7.1046 14 6 3.6631 3.2356 -7.3461 15 7 4.6058 3.9194 -6.7329 16 14 3.7078 3.0418 -9.2035 17 1 2.9627 4.1598 -9.8359 18 1 5.1177 3.0605 -9.6693 19 1 3.0786 1.7509 -9.5818 20 6 1.2354 2.7532 -4.6813 21 6 1.1319 3.0597 -3.2171 22 1 0.1977 3.5904 -3.0340 23 6 1.1697 1.8080 -2.3282 24 6 2.0470 -0.7330 1.2437 25 6 1.3770 -2.1055 1.3172 26 7 1.5042 -2.8044 0.0446 27 6 1.7815 -2.2044 -1.1136 28 8 1.8233 -2.8845 -2.1168 29 6 2.0453 -0.7316 -1.2419 30 1 -0.3634 0.4342 -0.9314 31 1 -0.3634 -1.0237 0.0897 32 1 -0.3633 0.5895 0.8418 33 1 1.3138 4.2580 -0.7401 34 1 3.0590 3.8701 -0.6205 35 1 3.6840 2.2845 -2.6758 36 1 4.4378 3.8918 -2.6697 37 1 4.5298 2.4862 -4.8365 38 1 4.1098 4.2024 -4.9501 39 1 5.3240 4.3225 -7.2454 40 1 0.8948 1.7298 -4.8391 41 1 0.5593 3.4199 -5.2165 42 1 1.7618 1.0274 -2.8060 43 1 0.1572 1.4498 -2.1429 44 1 3.1276 -0.8573 1.1722 45 1 1.8010 -0.1576 2.1361 46 1 0.3208 -1.9783 1.5544 47 1 1.8537 -2.6944 2.1009 48 1 1.3796 -3.7664 0.0398 49 1 1.5353 -0.3480 -2.1257 50 1 3.1178 -0.5644 -1.3416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088011278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:52 Heat of formation + Delta-G solvation = -27.108226 kcal Electronic energy + Delta-G solvation = -31444.222800 eV Core-core repulsion = 27472.426660 eV Total energy + Delta-G solvation = -3971.796140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42317 -39.97340 -38.55227 -36.73481 -35.68598 -34.23006 -32.47165 -31.52251 -30.25106 -29.88545 -28.25899 -27.81909 -25.91345 -24.75994 -23.88463 -22.69600 -21.91476 -21.28566 -19.44373 -18.76965 -17.88902 -17.58495 -17.14844 -16.76745 -16.23674 -16.09091 -15.50646 -15.03050 -14.98579 -14.89269 -14.73794 -13.93223 -13.84385 -13.75219 -13.60888 -13.16597 -13.05728 -12.83039 -12.77844 -12.57866 -12.36201 -12.09023 -11.92798 -11.78791 -11.61206 -11.36623 -11.24234 -11.08742 -10.88412 -10.74691 -10.46389 -10.33751 -10.18917 -10.16200 -9.70053 -9.65833 -9.53804 -9.48096 -9.33650 -8.56977 -8.36707 -6.68256 -5.54626 -3.19972 2.46659 2.56315 2.92332 3.04056 3.39404 3.45917 3.47244 4.06455 4.21378 4.34214 4.46407 4.48364 4.65088 4.72170 4.79607 4.85249 4.97536 5.05156 5.13747 5.25393 5.34028 5.39726 5.42722 5.44182 5.47871 5.52184 5.61706 5.64032 5.75907 5.76580 5.82955 5.93296 5.95278 6.00168 6.17676 6.25308 6.34818 6.53183 6.60388 6.65075 6.73887 6.82630 6.83947 7.07286 7.53176 7.61098 7.86863 8.02586 8.10558 8.14201 8.59494 9.36797 10.05370 10.29986 11.28594 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003580 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.914598 B = 7819.158470 C = 8882.100230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C 0.541 3.459 4 O -0.543 6.543 5 N -0.609 5.609 6 C 0.106 3.894 7 C -0.082 4.082 8 H 0.100 0.900 9 C -0.129 4.129 10 C 0.173 3.827 11 N -0.599 5.599 12 C -0.259 4.259 13 H 0.068 0.932 14 C 0.006 3.994 15 N -0.908 5.908 16 Si 0.905 3.095 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.178 3.822 21 C -0.099 4.099 22 H 0.073 0.927 23 C 0.096 3.904 24 C -0.113 4.113 25 C 0.110 3.890 26 N -0.723 5.723 27 C 0.527 3.473 28 O -0.549 6.549 29 C -0.140 4.140 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.012 0.988 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.399 0.601 49 H 0.120 0.880 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -6.831 18.001 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C 0.329 3.671 4 O -0.421 6.421 5 N -0.342 5.342 6 C -0.016 4.016 7 C -0.102 4.102 8 H 0.118 0.882 9 C -0.167 4.167 10 C 0.049 3.951 11 N -0.325 5.325 12 C -0.388 4.388 13 H 0.086 0.914 14 C -0.191 4.191 15 N -0.555 5.555 16 Si 0.735 3.265 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.052 3.948 21 C -0.118 4.118 22 H 0.091 0.909 23 C -0.026 4.026 24 C -0.151 4.151 25 C -0.015 4.015 26 N -0.376 5.376 27 C 0.314 3.686 28 O -0.427 6.427 29 C -0.179 4.179 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.234 0.766 49 H 0.138 0.862 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.445 -6.674 18.051 21.016 hybrid contribution 0.028 -0.470 -0.916 1.030 sum -8.417 -7.144 17.136 20.384 Atomic orbital electron populations 1.22059 0.91880 1.03283 1.03552 1.20823 0.97840 0.92590 0.96726 1.19880 0.79279 0.86461 0.81470 1.90687 1.40776 1.75856 1.34748 1.48627 1.59970 1.10706 1.14853 1.22682 1.00786 0.80353 0.97813 1.22254 0.96285 0.99987 0.91643 0.88168 1.21808 0.94889 0.99097 1.00937 1.20653 0.86376 1.03165 0.84939 1.42751 1.01452 1.82514 1.05798 1.19289 1.11831 1.23744 0.83952 0.91392 1.25188 0.97740 0.98035 0.98102 1.70060 1.13646 1.39087 1.32678 0.86231 0.76849 0.77791 0.85609 1.21386 1.21713 1.20563 1.19263 0.88685 0.97888 0.88983 1.21508 0.99164 0.94806 0.96304 0.90874 1.22635 0.97446 0.98892 0.83639 1.21750 1.01321 0.94145 0.97855 1.21455 1.01138 0.93601 0.85269 1.45495 1.72574 1.11723 1.07769 1.19982 0.75552 0.90417 0.82695 1.90801 1.51600 1.64978 1.35298 1.22130 1.04953 0.91250 0.99595 0.91015 0.90983 0.91452 0.91816 0.90330 0.93812 0.92688 0.95597 0.89119 0.93915 0.97071 0.95989 0.89922 0.91097 0.90236 0.88579 0.91120 0.90164 0.76564 0.86191 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.77 37.16 0.29 -0.98 16 2 C -0.08 -0.78 0.50 -155.45 -0.08 -0.86 16 3 C 0.54 7.28 6.57 -10.98 -0.07 7.21 16 4 O -0.54 -8.87 16.10 5.56 0.09 -8.78 16 5 N -0.61 -8.18 2.80 -169.57 -0.48 -8.66 16 6 C 0.11 1.45 6.26 -1.77 -0.01 1.44 16 7 C -0.08 -1.29 3.78 -88.49 -0.33 -1.62 16 8 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 9 C -0.13 -2.40 4.96 -27.50 -0.14 -2.54 16 10 C 0.17 4.10 4.67 -5.91 -0.03 4.08 16 11 N -0.60 -14.47 3.25 -179.58 -0.58 -15.05 16 12 C -0.26 -6.97 9.41 -15.06 -0.14 -7.12 16 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 14 C 0.01 0.17 5.40 -17.43 -0.09 0.08 16 15 N -0.91 -25.62 9.53 55.49 0.53 -25.10 16 16 Si 0.91 21.64 29.56 -169.99 -5.02 16.62 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.18 3.48 5.67 -6.89 -0.04 3.44 16 21 C -0.10 -1.49 2.69 -91.23 -0.24 -1.74 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 C 0.10 1.27 3.75 -3.13 -0.01 1.26 16 24 C -0.11 -0.96 4.40 -26.60 -0.12 -1.08 16 25 C 0.11 0.67 6.38 -4.49 -0.03 0.64 16 26 N -0.72 -6.18 5.26 -61.40 -0.32 -6.51 16 27 C 0.53 6.52 7.22 -11.87 -0.09 6.43 16 28 O -0.55 -9.27 17.78 5.56 0.10 -9.17 16 29 C -0.14 -1.65 4.01 -28.10 -0.11 -1.77 16 30 H 0.07 0.62 5.32 -51.93 -0.28 0.35 16 31 H 0.07 0.53 5.74 -51.93 -0.30 0.24 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 35 H 0.04 0.82 6.77 -51.93 -0.35 0.47 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.70 7.80 -51.92 -0.41 0.29 16 38 H 0.09 2.43 5.83 -51.93 -0.30 2.13 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.01 0.23 7.78 -51.93 -0.40 -0.18 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.23 5.44 -51.93 -0.28 0.95 16 43 H 0.07 0.78 5.67 -51.93 -0.29 0.48 16 44 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.10 0.80 7.82 -51.93 -0.41 0.40 16 46 H 0.07 0.34 6.75 -51.93 -0.35 -0.01 16 47 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 48 H 0.40 2.94 8.80 -40.82 -0.36 2.58 16 49 H 0.12 1.50 4.74 -51.93 -0.25 1.26 16 50 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -32.86 364.71 -9.17 -42.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.73 Total: 2.24 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.25 Total: 6.87 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.85 Total: -55.31 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.19 Total: -17.95 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.86 -9.17 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088011278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.926 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds