Wall clock time and date at job start Tue Mar 31 2020 19:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.66998 * 2 1 4 4 O 1.21281 * 120.00071 * 114.85294 * 3 2 1 5 5 N 1.34779 * 119.99910 * 294.84600 * 3 2 1 6 6 C 1.47755 * 125.81911 * 174.01763 * 5 3 2 7 7 C 1.55965 * 104.12186 * 154.37442 * 6 5 3 8 8 H 1.09000 * 113.99853 * 161.08759 * 7 6 5 9 9 C 1.52876 * 106.49175 * 286.21164 * 7 6 5 10 10 C 1.51605 * 111.55382 * 168.38670 * 9 7 6 11 11 N 1.44324 * 113.11418 * 320.90424 * 10 9 7 12 12 C 1.36939 * 116.35649 * 187.25844 * 11 10 9 13 13 H 1.08002 * 119.99536 * 155.08552 * 12 11 10 14 14 C 1.38803 * 120.00002 * 335.08576 * 12 11 10 15 15 N 1.31617 * 120.00339 * 5.00599 * 14 12 11 16 16 Si 1.86804 * 119.99843 * 185.00768 * 14 12 11 17 17 H 1.48494 * 109.47300 * 90.00119 * 16 14 12 18 18 H 1.48502 * 109.47089 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.47043 * 329.99774 * 16 14 12 20 20 C 1.43997 * 127.28721 * 7.29122 * 11 10 9 21 21 C 1.49950 * 116.10049 * 2.47666 * 20 11 10 22 22 H 1.08999 * 108.82720 * 141.05008 * 21 20 11 23 23 C 1.47621 * 125.81824 * 354.33362 * 5 3 2 24 24 C 1.53342 * 109.70436 * 120.51534 * 2 1 3 25 25 C 1.52908 * 108.68435 * 52.23190 * 24 2 1 26 26 N 1.45754 * 110.49670 * 50.72680 * 25 24 2 27 27 C 1.33350 * 124.10597 * 340.95610 * 26 25 24 28 28 O 1.21277 * 118.24843 * 182.18212 * 27 26 25 29 29 C 1.50178 * 123.50827 * 2.20605 * 27 26 25 30 30 H 1.08998 * 109.47616 * 65.00341 * 1 2 3 31 31 H 1.09002 * 109.47456 * 185.00685 * 1 2 3 32 32 H 1.09004 * 109.46889 * 305.00184 * 1 2 3 33 33 H 1.08996 * 110.50185 * 273.03368 * 6 5 3 34 34 H 1.08996 * 110.49730 * 35.72009 * 6 5 3 35 35 H 1.08993 * 109.06821 * 47.84582 * 9 7 6 36 36 H 1.09000 * 108.99910 * 288.87193 * 9 7 6 37 37 H 1.09009 * 108.75426 * 199.97568 * 10 9 7 38 38 H 1.08993 * 108.75972 * 81.85100 * 10 9 7 39 39 H 0.97003 * 120.00568 * 179.97438 * 15 14 12 40 40 H 1.09007 * 108.15563 * 240.75133 * 20 11 10 41 41 H 1.08999 * 107.99925 * 124.07506 * 20 11 10 42 42 H 1.09003 * 110.07645 * 299.58838 * 23 5 3 43 43 H 1.08995 * 110.08168 * 61.14422 * 23 5 3 44 44 H 1.09004 * 109.60714 * 171.97311 * 24 2 1 45 45 H 1.08998 * 109.60607 * 292.46317 * 24 2 1 46 46 H 1.08993 * 109.28952 * 290.41489 * 25 24 2 47 47 H 1.09007 * 109.14102 * 170.94044 * 25 24 2 48 48 H 0.96998 * 117.94735 * 160.93968 * 26 25 24 49 49 H 1.09004 * 109.40097 * 222.28788 * 29 27 26 50 50 H 1.09004 * 109.33249 * 102.49965 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.6571 1.8415 0.9530 5 7 1.8023 2.2187 -1.0592 6 6 2.1279 3.6573 -1.1456 7 6 2.2909 3.9194 -2.6745 8 1 2.2121 4.9697 -2.9551 9 6 3.6250 3.2941 -3.0821 10 6 3.7728 3.2306 -4.5896 11 7 2.5450 2.8853 -5.2652 12 6 2.6356 2.6584 -6.6127 13 1 1.9076 2.0304 -7.1046 14 6 3.6631 3.2356 -7.3461 15 7 4.6058 3.9194 -6.7329 16 14 3.7078 3.0418 -9.2035 17 1 2.9627 4.1598 -9.8359 18 1 5.1177 3.0605 -9.6693 19 1 3.0786 1.7509 -9.5818 20 6 1.2354 2.7532 -4.6813 21 6 1.1319 3.0597 -3.2171 22 1 0.1977 3.5904 -3.0340 23 6 1.1697 1.8080 -2.3282 24 6 2.0470 -0.7330 1.2437 25 6 1.3770 -2.1055 1.3172 26 7 1.5042 -2.8044 0.0446 27 6 1.7815 -2.2044 -1.1136 28 8 1.8233 -2.8845 -2.1168 29 6 2.0453 -0.7316 -1.2419 30 1 -0.3634 0.4342 -0.9314 31 1 -0.3634 -1.0237 0.0897 32 1 -0.3633 0.5895 0.8418 33 1 1.3138 4.2580 -0.7401 34 1 3.0590 3.8701 -0.6205 35 1 3.6840 2.2845 -2.6758 36 1 4.4378 3.8918 -2.6697 37 1 4.5298 2.4862 -4.8365 38 1 4.1098 4.2024 -4.9501 39 1 5.3240 4.3225 -7.2454 40 1 0.8948 1.7298 -4.8391 41 1 0.5593 3.4199 -5.2165 42 1 1.7618 1.0274 -2.8060 43 1 0.1572 1.4498 -2.1429 44 1 3.1276 -0.8573 1.1722 45 1 1.8010 -0.1576 2.1361 46 1 0.3208 -1.9783 1.5544 47 1 1.8537 -2.6944 2.1009 48 1 1.3796 -3.7664 0.0398 49 1 1.5353 -0.3480 -2.1257 50 1 3.1178 -0.5644 -1.3416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088011278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:51 Heat of formation + Delta-G solvation = -49.927679 kcal Electronic energy + Delta-G solvation = -31445.212326 eV Core-core repulsion = 27472.426660 eV Total energy + Delta-G solvation = -3972.785666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.39832 -41.09313 -39.78751 -37.73986 -37.28783 -35.14591 -34.03814 -33.03567 -31.87266 -30.81452 -29.32604 -28.85530 -27.30555 -26.02376 -25.09548 -23.90726 -23.38254 -22.63568 -20.47084 -19.64447 -19.33496 -18.93264 -18.51041 -17.70336 -17.31806 -17.10887 -16.88037 -16.51167 -16.05118 -15.95606 -15.72874 -15.55863 -15.40028 -14.93228 -14.71286 -14.65807 -14.20590 -14.06065 -13.89576 -13.70625 -13.51085 -13.29252 -13.11362 -12.84742 -12.76233 -12.74302 -12.51645 -12.37459 -12.17109 -12.05368 -12.01440 -11.97542 -11.52469 -11.49303 -11.34974 -11.25356 -11.15405 -10.58019 -10.46074 -10.08652 -9.64744 -8.69151 -7.62175 -5.30837 1.47001 1.47316 1.47440 1.54547 1.56489 1.89379 2.27379 2.50526 3.14939 3.28038 3.38199 3.49097 3.57209 3.65532 3.67561 3.77755 3.87589 3.97258 4.10944 4.19086 4.22015 4.33933 4.43330 4.50476 4.51642 4.59056 4.62747 4.69526 4.72099 4.81269 4.84137 4.88310 4.93052 4.96771 5.02323 5.08521 5.10741 5.12224 5.20327 5.31167 5.31711 5.40478 5.57337 5.76154 5.82538 6.11689 6.24595 6.46406 6.51066 7.04440 7.15201 7.27939 8.12416 8.27455 9.17562 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003580 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.914598 B = 7819.158470 C = 8882.100230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.539 3.461 4 O -0.573 6.573 5 N -0.610 5.610 6 C 0.114 3.886 7 C -0.080 4.080 8 H 0.104 0.896 9 C -0.117 4.117 10 C 0.189 3.811 11 N -0.612 5.612 12 C -0.274 4.274 13 H 0.068 0.932 14 C -0.047 4.047 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.281 1.281 18 H -0.296 1.296 19 H -0.273 1.273 20 C 0.174 3.826 21 C -0.096 4.096 22 H 0.109 0.891 23 C 0.104 3.896 24 C -0.113 4.113 25 C 0.110 3.890 26 N -0.706 5.706 27 C 0.527 3.473 28 O -0.603 6.603 29 C -0.137 4.137 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.058 0.942 37 H -0.022 1.022 38 H 0.060 0.940 39 H 0.244 0.756 40 H 0.014 0.986 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.408 0.592 49 H 0.112 0.888 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -7.368 20.213 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C 0.329 3.671 4 O -0.453 6.453 5 N -0.342 5.342 6 C -0.008 4.008 7 C -0.099 4.099 8 H 0.122 0.878 9 C -0.155 4.155 10 C 0.064 3.936 11 N -0.338 5.338 12 C -0.404 4.404 13 H 0.086 0.914 14 C -0.241 4.241 15 N -0.580 5.580 16 Si 0.795 3.205 17 H -0.208 1.208 18 H -0.222 1.222 19 H -0.198 1.198 20 C 0.048 3.952 21 C -0.115 4.115 22 H 0.127 0.873 23 C -0.018 4.018 24 C -0.151 4.151 25 C -0.012 4.012 26 N -0.358 5.358 27 C 0.315 3.685 28 O -0.485 6.485 29 C -0.177 4.177 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.077 0.923 37 H -0.004 1.004 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.128 0.872 48 H 0.245 0.755 49 H 0.130 0.870 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.161 -7.224 20.316 24.280 hybrid contribution 0.895 -0.326 -1.575 1.840 sum -10.266 -7.550 18.741 22.664 Atomic orbital electron populations 1.22071 0.89765 1.04478 1.04071 1.20838 0.99369 0.90345 0.96625 1.20412 0.78538 0.87392 0.80800 1.90675 1.42061 1.76666 1.35866 1.48681 1.59888 1.10739 1.14900 1.22598 1.01498 0.80981 0.95709 1.22194 0.94247 0.99986 0.93465 0.87786 1.21598 0.97523 0.99425 0.96984 1.20188 0.85498 0.99684 0.88226 1.42987 1.03195 1.82267 1.05322 1.19633 1.11633 1.23585 0.85543 0.91378 1.25914 0.97683 0.98406 1.02074 1.70332 1.13974 1.40025 1.33654 0.85270 0.76391 0.77999 0.80826 1.20762 1.22226 1.19804 1.19417 0.86050 0.97833 0.91863 1.21459 1.00487 0.95960 0.93576 0.87332 1.22569 0.98842 0.97345 0.83042 1.21778 1.00649 0.95486 0.97150 1.21711 1.02871 0.92302 0.84362 1.45449 1.70387 1.12355 1.07560 1.19986 0.75263 0.90244 0.83026 1.90778 1.54432 1.65928 1.37396 1.22028 1.03806 0.91529 1.00297 0.91142 0.89588 0.90114 0.88972 0.91359 0.94208 0.92300 1.00369 0.92253 0.94590 0.96817 0.96166 0.91969 0.87817 0.91790 0.87773 0.88398 0.87213 0.75520 0.87007 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.77 71.98 0.56 -1.37 16 2 C -0.07 -1.27 0.50 -52.79 -0.03 -1.29 16 3 C 0.54 13.57 6.57 87.66 0.58 14.15 16 4 O -0.57 -17.90 16.10 -3.03 -0.05 -17.95 16 5 N -0.61 -15.19 2.80 -808.77 -2.27 -17.46 16 6 C 0.11 2.87 6.26 87.17 0.55 3.41 16 7 C -0.08 -2.39 3.78 -9.41 -0.04 -2.42 16 8 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 9 C -0.12 -4.46 4.96 30.10 0.15 -4.31 16 10 C 0.19 9.42 4.67 86.33 0.40 9.83 16 11 N -0.61 -30.36 3.25 -722.07 -2.35 -32.70 16 12 C -0.27 -15.15 9.41 84.03 0.79 -14.36 16 13 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 14 C -0.05 -2.62 5.40 84.86 0.46 -2.16 16 15 N -0.93 -54.90 9.53 21.65 0.21 -54.70 16 16 Si 0.97 45.47 29.56 68.60 2.03 47.50 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.17 6.68 5.67 85.86 0.49 7.17 16 21 C -0.10 -2.70 2.69 -11.19 -0.03 -2.73 16 22 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 23 C 0.10 2.54 3.75 86.36 0.32 2.87 16 24 C -0.11 -1.64 4.40 30.68 0.13 -1.50 16 25 C 0.11 0.92 6.38 86.49 0.55 1.48 16 26 N -0.71 -10.39 5.26 -467.34 -2.46 -12.84 16 27 C 0.53 12.67 7.22 87.71 0.63 13.30 16 28 O -0.60 -20.61 17.78 -3.02 -0.05 -20.67 16 29 C -0.14 -3.18 4.01 29.71 0.12 -3.06 16 30 H 0.07 0.96 5.32 -2.39 -0.01 0.94 16 31 H 0.09 0.91 5.74 -2.39 -0.01 0.90 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 35 H 0.04 1.53 6.77 -2.39 -0.02 1.52 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H -0.02 -1.27 7.80 -2.38 -0.02 -1.29 16 38 H 0.06 3.37 5.83 -2.39 -0.01 3.35 16 39 H 0.24 14.00 8.31 -92.71 -0.77 13.22 16 40 H 0.01 0.54 7.78 -2.38 -0.02 0.52 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.82 5.44 -2.39 -0.01 1.81 16 43 H 0.10 1.90 5.67 -2.39 -0.01 1.89 16 44 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 45 H 0.10 1.42 7.82 -2.39 -0.02 1.40 16 46 H 0.10 0.43 6.75 -2.39 -0.02 0.41 16 47 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 48 H 0.41 5.00 8.80 -92.71 -0.82 4.18 16 49 H 0.11 2.78 4.74 -2.38 -0.01 2.77 16 50 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 Total: -1.00 -75.77 364.71 0.85 -74.92 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.15 Total: 14.90 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 5.64 Total: 18.99 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.86 Total: -117.70 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.10 Total: -38.62 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.77 0.85 -74.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088011278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.994 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds