Wall clock time and date at job start Tue Mar 31 2020 18:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36763 * 125.79884 * 2 1 4 4 C 1.47266 * 126.94724 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99399 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00214 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99729 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.45914 * 35.00335 * 7 6 4 9 9 C 1.53041 * 109.45900 * 275.02683 * 7 6 4 10 10 C 1.53163 * 109.32782 * 301.36114 * 9 7 6 11 11 N 1.46931 * 108.76695 * 305.35467 * 10 9 7 12 12 C 1.36937 * 120.63113 * 233.63114 * 11 10 9 13 13 H 1.08000 * 119.99811 * 151.81016 * 12 11 10 14 14 C 1.38813 * 119.99796 * 331.81156 * 12 11 10 15 15 N 1.31609 * 120.00223 * 343.08089 * 14 12 11 16 16 Si 1.86805 * 119.99592 * 163.08574 * 14 12 11 17 17 H 1.48495 * 109.47192 * 90.00024 * 16 14 12 18 18 H 1.48501 * 109.46931 * 209.99562 * 16 14 12 19 19 H 1.48493 * 109.47092 * 329.99632 * 16 14 12 20 20 C 1.46928 * 118.73748 * 53.61145 * 11 10 9 21 21 C 1.53042 * 109.45565 * 154.97410 * 7 6 4 22 22 H 1.09001 * 109.49560 * 178.63903 * 21 7 6 23 23 O 1.42900 * 109.49790 * 298.69785 * 21 7 6 24 24 C 1.46688 * 106.11475 * 180.02562 * 3 2 1 25 25 C 1.34486 * 106.33419 * 0.02562 * 24 3 2 26 26 N 1.34661 * 125.80002 * 179.70137 * 2 1 3 27 27 C 1.46498 * 124.85326 * 359.95849 * 26 2 1 28 28 C 1.52998 * 109.47223 * 119.99974 * 27 26 2 29 29 C 1.53000 * 109.46850 * 240.00190 * 27 26 2 30 30 H 1.09001 * 109.47241 * 90.02368 * 1 2 3 31 31 H 1.08995 * 109.47076 * 330.01981 * 1 2 3 32 32 H 1.09008 * 109.46644 * 210.02042 * 1 2 3 33 33 H 0.96997 * 119.99789 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.49844 * 61.29507 * 9 7 6 35 35 H 1.08998 * 109.49446 * 181.39621 * 9 7 6 36 36 H 1.09004 * 109.59075 * 185.57524 * 10 9 7 37 37 H 1.09004 * 109.59278 * 65.13949 * 10 9 7 38 38 H 0.97004 * 120.00106 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58455 * 186.59970 * 20 11 10 40 40 H 1.09001 * 109.70509 * 66.25199 * 20 11 10 41 41 H 0.96697 * 113.99744 * 180.02562 * 23 21 7 42 42 H 1.08001 * 126.83886 * 180.02562 * 24 3 2 43 43 H 1.08000 * 125.57328 * 180.02562 * 25 24 3 44 44 H 1.08998 * 109.47011 * 359.97438 * 27 26 2 45 45 H 1.09002 * 109.46766 * 60.00216 * 28 27 26 46 46 H 1.09002 * 109.47131 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47070 * 299.99883 * 28 27 26 48 48 H 1.09000 * 109.47052 * 59.99711 * 29 27 26 49 49 H 1.09002 * 109.47143 * 180.02562 * 29 27 26 50 50 H 1.08998 * 109.47056 * 299.99657 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 0.0001 7 6 2.3503 4.9045 0.0001 8 1 1.4384 5.0014 0.5892 9 6 2.0789 5.3541 -1.4374 10 6 3.3527 5.1840 -2.2707 11 7 4.4495 5.9048 -1.6101 12 6 5.1894 6.8304 -2.2966 13 1 5.6502 7.6523 -1.7688 14 6 5.3470 6.7121 -3.6706 15 7 5.0855 5.5684 -4.2670 16 14 5.9304 8.1764 -4.6732 17 1 7.4132 8.1631 -4.7520 18 1 5.3612 8.0971 -6.0425 19 1 5.4804 9.4329 -4.0222 20 6 4.7370 5.6140 -0.1989 21 6 3.4474 5.7791 0.6112 22 1 3.1347 6.8231 0.5895 23 8 3.6789 5.3787 1.9633 24 6 3.6882 0.6152 -0.0006 25 6 3.6096 -0.7274 -0.0015 26 7 2.2947 -1.0922 0.0057 27 6 1.8094 -2.4744 0.0138 28 6 2.3202 -3.2016 -1.2317 29 6 2.3217 -3.1874 1.2668 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8901 0.5135 32 1 -0.3633 -0.8899 0.5142 33 1 3.7310 3.2914 0.0012 34 1 1.2814 4.7460 -1.8644 35 1 1.7794 6.4021 -1.4403 36 1 3.1944 5.5943 -3.2681 37 1 3.6030 4.1256 -2.3440 38 1 5.1959 5.4857 -5.2272 39 1 5.4921 6.3078 0.1706 40 1 5.1016 4.5914 -0.1013 41 1 4.3635 5.8919 2.4138 42 1 4.5890 1.2109 -0.0004 43 1 4.4498 -1.4059 -0.0018 44 1 0.7194 -2.4767 0.0149 45 1 3.4102 -3.1992 -1.2323 46 1 1.9595 -4.2302 -1.2254 47 1 1.9552 -2.6936 -2.1243 48 1 1.9578 -2.6693 2.1540 49 1 1.9610 -4.2160 1.2726 50 1 3.4117 -3.1851 1.2661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090513747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:56 Heat of formation + Delta-G solvation = -21.556964 kcal Electronic energy + Delta-G solvation = -30284.483570 eV Core-core repulsion = 26312.928150 eV Total energy + Delta-G solvation = -3971.555420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.41648 -39.36778 -37.56348 -35.40941 -35.31276 -33.85529 -31.76938 -31.43001 -30.37236 -29.44940 -28.41666 -27.70384 -26.27450 -25.21210 -23.03116 -22.29104 -22.06086 -21.62487 -19.73694 -18.72109 -18.35011 -17.30417 -16.98373 -16.50014 -16.03315 -15.35056 -15.13688 -14.84777 -14.75105 -14.26118 -14.12919 -13.85798 -13.61705 -13.54188 -13.28283 -13.05834 -12.90729 -12.78585 -12.66376 -12.50758 -12.36323 -12.28627 -12.12532 -11.84605 -11.57049 -11.55799 -11.40879 -11.36634 -11.11218 -10.83470 -10.55572 -10.33523 -10.11427 -9.88485 -9.71543 -9.32781 -9.26921 -8.55188 -8.47115 -8.31684 -7.95226 -6.69692 -5.81060 -3.25294 2.00488 2.59280 2.74445 3.36119 3.43654 3.45638 3.93048 4.03590 4.23658 4.43446 4.54065 4.61143 4.62142 4.75819 4.98930 5.09606 5.21554 5.27482 5.29596 5.34008 5.34838 5.41798 5.51476 5.57691 5.65198 5.66035 5.70655 5.73353 5.77608 5.81980 6.05429 6.09313 6.10993 6.19411 6.31844 6.42241 6.54746 6.69056 6.75529 6.83501 6.93248 7.16340 7.22958 7.34463 7.38089 7.68516 7.77076 8.01853 8.23021 8.41990 8.91469 9.17485 9.80032 10.36265 11.26786 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003049 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.981549 B = 9181.661086 C = 9969.787668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.099 3.901 3 C -0.227 4.227 4 C 0.591 3.409 5 O -0.565 6.565 6 N -0.700 5.700 7 C 0.168 3.832 8 H 0.077 0.923 9 C -0.153 4.153 10 C 0.173 3.827 11 N -0.587 5.587 12 C -0.258 4.258 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.119 3.881 21 C 0.076 3.924 22 H 0.064 0.936 23 O -0.570 6.570 24 C -0.161 4.161 25 C -0.019 4.019 26 N -0.438 5.438 27 C 0.121 3.879 28 C -0.163 4.163 29 C -0.162 4.162 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.401 0.599 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.254 0.746 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.372 0.628 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 -16.261 10.294 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.017 4.017 3 C -0.237 4.237 4 C 0.380 3.620 5 O -0.447 6.447 6 N -0.350 5.350 7 C 0.063 3.937 8 H 0.095 0.905 9 C -0.193 4.193 10 C 0.048 3.952 11 N -0.311 5.311 12 C -0.387 4.387 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.541 5.541 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.205 1.205 20 C -0.008 4.008 21 C 0.015 3.985 22 H 0.082 0.918 23 O -0.374 6.374 24 C -0.185 4.185 25 C -0.144 4.144 26 N -0.116 5.116 27 C 0.019 3.981 28 C -0.220 4.220 29 C -0.220 4.220 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.620 -16.864 9.969 20.678 hybrid contribution 1.495 0.979 -0.568 1.875 sum -5.125 -15.885 9.401 19.157 Atomic orbital electron populations 1.20533 0.87481 1.03653 1.03169 1.20233 0.93546 0.85182 1.02774 1.20180 0.93116 0.92135 1.18226 1.17280 0.85312 0.84026 0.75353 1.90667 1.16780 1.84550 1.52665 1.45677 1.09825 1.05399 1.74071 1.20759 0.96326 0.79869 0.96717 0.90504 1.22573 1.01151 1.00696 0.94858 1.20776 0.83406 0.95052 0.96015 1.44003 1.34791 1.46598 1.05704 1.19133 1.27638 1.01758 0.90215 0.91708 1.25053 0.99900 0.96431 0.97969 1.70036 1.52155 1.22444 1.09513 0.86307 0.78320 0.82536 0.79637 1.21404 1.21530 1.20461 1.21521 0.93803 0.98325 0.87179 1.22749 0.97439 0.97214 0.81126 0.91773 1.86504 1.61502 1.63474 1.25890 1.22042 0.95991 0.93476 1.07011 1.21466 0.85529 0.95915 1.11528 1.43767 1.05847 1.05263 1.56729 1.21466 1.00348 0.79501 0.96803 1.22168 1.02424 1.00508 0.96938 1.22167 1.02395 1.00610 0.96806 0.90736 0.88042 0.92464 0.76341 0.91856 0.91730 0.89437 0.95893 0.93566 0.92449 0.95982 0.78209 0.83851 0.82152 0.88276 0.91578 0.90775 0.91582 0.91720 0.90772 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.35 36.01 0.34 -0.78 16 2 C 0.10 1.40 6.89 -81.88 -0.56 0.84 16 3 C -0.23 -3.77 6.29 -103.35 -0.65 -4.42 16 4 C 0.59 11.33 7.77 -12.59 -0.10 11.24 16 5 O -0.57 -11.90 14.47 5.26 0.08 -11.83 16 6 N -0.70 -13.11 4.15 -54.89 -0.23 -13.34 16 7 C 0.17 3.23 2.47 -67.89 -0.17 3.07 16 8 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 9 C -0.15 -3.16 5.77 -26.63 -0.15 -3.31 16 10 C 0.17 4.17 5.05 -3.72 -0.02 4.15 16 11 N -0.59 -14.30 2.99 -172.33 -0.52 -14.81 16 12 C -0.26 -6.91 9.58 -15.06 -0.14 -7.06 16 13 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 14 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 15 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 16 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.12 2.39 5.84 -3.71 -0.02 2.37 16 21 C 0.08 1.35 3.36 -26.61 -0.09 1.26 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 O -0.57 -9.08 13.21 -35.23 -0.47 -9.54 16 24 C -0.16 -2.34 10.56 -37.50 -0.40 -2.74 16 25 C -0.02 -0.22 10.17 -16.82 -0.17 -0.40 16 26 N -0.44 -5.02 2.57 -105.46 -0.27 -5.29 16 27 C 0.12 0.94 3.45 -67.93 -0.23 0.71 16 28 C -0.16 -1.09 9.22 37.16 0.34 -0.75 16 29 C -0.16 -1.01 9.23 37.16 0.34 -0.67 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.46 6.47 -51.93 -0.34 1.12 16 32 H 0.06 0.53 6.94 -51.92 -0.36 0.17 16 33 H 0.40 7.35 5.99 -40.82 -0.24 7.10 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 37 H 0.02 0.59 7.74 -51.93 -0.40 0.19 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.02 0.45 6.65 -51.93 -0.35 0.11 16 41 H 0.37 4.28 9.08 45.56 0.41 4.69 16 42 H 0.14 1.98 7.70 -52.49 -0.40 1.58 16 43 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.10 0.69 6.46 -51.93 -0.34 0.35 16 45 H 0.07 0.45 7.88 -51.93 -0.41 0.04 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -32.94 393.15 -8.96 -41.91 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -7.31 Total: 12.19 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.77 Total: 3.57 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.39 Total: -58.61 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.39 Total: -21.37 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.94 -8.96 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090513747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.351 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds