Wall clock time and date at job start Tue Mar 31 2020 18:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36763 * 125.79884 * 2 1 4 4 C 1.47266 * 126.94724 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99399 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00214 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99729 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.45914 * 35.00335 * 7 6 4 9 9 C 1.53041 * 109.45900 * 275.02683 * 7 6 4 10 10 C 1.53163 * 109.32782 * 301.36114 * 9 7 6 11 11 N 1.46931 * 108.76695 * 305.35467 * 10 9 7 12 12 C 1.36937 * 120.63113 * 233.63114 * 11 10 9 13 13 H 1.08000 * 119.99811 * 151.81016 * 12 11 10 14 14 C 1.38813 * 119.99796 * 331.81156 * 12 11 10 15 15 N 1.31609 * 120.00223 * 343.08089 * 14 12 11 16 16 Si 1.86805 * 119.99592 * 163.08574 * 14 12 11 17 17 H 1.48495 * 109.47192 * 90.00024 * 16 14 12 18 18 H 1.48501 * 109.46931 * 209.99562 * 16 14 12 19 19 H 1.48493 * 109.47092 * 329.99632 * 16 14 12 20 20 C 1.46928 * 118.73748 * 53.61145 * 11 10 9 21 21 C 1.53042 * 109.45565 * 154.97410 * 7 6 4 22 22 H 1.09001 * 109.49560 * 178.63903 * 21 7 6 23 23 O 1.42900 * 109.49790 * 298.69785 * 21 7 6 24 24 C 1.46688 * 106.11475 * 180.02562 * 3 2 1 25 25 C 1.34486 * 106.33419 * 0.02562 * 24 3 2 26 26 N 1.34661 * 125.80002 * 179.70137 * 2 1 3 27 27 C 1.46498 * 124.85326 * 359.95849 * 26 2 1 28 28 C 1.52998 * 109.47223 * 119.99974 * 27 26 2 29 29 C 1.53000 * 109.46850 * 240.00190 * 27 26 2 30 30 H 1.09001 * 109.47241 * 90.02368 * 1 2 3 31 31 H 1.08995 * 109.47076 * 330.01981 * 1 2 3 32 32 H 1.09008 * 109.46644 * 210.02042 * 1 2 3 33 33 H 0.96997 * 119.99789 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.49844 * 61.29507 * 9 7 6 35 35 H 1.08998 * 109.49446 * 181.39621 * 9 7 6 36 36 H 1.09004 * 109.59075 * 185.57524 * 10 9 7 37 37 H 1.09004 * 109.59278 * 65.13949 * 10 9 7 38 38 H 0.97004 * 120.00106 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.58455 * 186.59970 * 20 11 10 40 40 H 1.09001 * 109.70509 * 66.25199 * 20 11 10 41 41 H 0.96697 * 113.99744 * 180.02562 * 23 21 7 42 42 H 1.08001 * 126.83886 * 180.02562 * 24 3 2 43 43 H 1.08000 * 125.57328 * 180.02562 * 25 24 3 44 44 H 1.08998 * 109.47011 * 359.97438 * 27 26 2 45 45 H 1.09002 * 109.46766 * 60.00216 * 28 27 26 46 46 H 1.09002 * 109.47131 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47070 * 299.99883 * 28 27 26 48 48 H 1.09000 * 109.47052 * 59.99711 * 29 27 26 49 49 H 1.09002 * 109.47143 * 180.02562 * 29 27 26 50 50 H 1.08998 * 109.47056 * 299.99657 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 0.0001 7 6 2.3503 4.9045 0.0001 8 1 1.4384 5.0014 0.5892 9 6 2.0789 5.3541 -1.4374 10 6 3.3527 5.1840 -2.2707 11 7 4.4495 5.9048 -1.6101 12 6 5.1894 6.8304 -2.2966 13 1 5.6502 7.6523 -1.7688 14 6 5.3470 6.7121 -3.6706 15 7 5.0855 5.5684 -4.2670 16 14 5.9304 8.1764 -4.6732 17 1 7.4132 8.1631 -4.7520 18 1 5.3612 8.0971 -6.0425 19 1 5.4804 9.4329 -4.0222 20 6 4.7370 5.6140 -0.1989 21 6 3.4474 5.7791 0.6112 22 1 3.1347 6.8231 0.5895 23 8 3.6789 5.3787 1.9633 24 6 3.6882 0.6152 -0.0006 25 6 3.6096 -0.7274 -0.0015 26 7 2.2947 -1.0922 0.0057 27 6 1.8094 -2.4744 0.0138 28 6 2.3202 -3.2016 -1.2317 29 6 2.3217 -3.1874 1.2668 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8901 0.5135 32 1 -0.3633 -0.8899 0.5142 33 1 3.7310 3.2914 0.0012 34 1 1.2814 4.7460 -1.8644 35 1 1.7794 6.4021 -1.4403 36 1 3.1944 5.5943 -3.2681 37 1 3.6030 4.1256 -2.3440 38 1 5.1959 5.4857 -5.2272 39 1 5.4921 6.3078 0.1706 40 1 5.1016 4.5914 -0.1013 41 1 4.3635 5.8919 2.4138 42 1 4.5890 1.2109 -0.0004 43 1 4.4498 -1.4059 -0.0018 44 1 0.7194 -2.4767 0.0149 45 1 3.4102 -3.1992 -1.2323 46 1 1.9595 -4.2302 -1.2254 47 1 1.9552 -2.6936 -2.1243 48 1 1.9578 -2.6693 2.1540 49 1 1.9610 -4.2160 1.2726 50 1 3.4117 -3.1851 1.2661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090513747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:55 Heat of formation + Delta-G solvation = -43.597109 kcal Electronic energy + Delta-G solvation = -30285.439302 eV Core-core repulsion = 26312.928150 eV Total energy + Delta-G solvation = -3972.511152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.42614 -40.88755 -39.08254 -36.93165 -36.13053 -35.51499 -33.51282 -32.54727 -31.98138 -30.70220 -29.97338 -28.18773 -27.50601 -26.97022 -24.35256 -23.74033 -23.37352 -23.11753 -21.03488 -20.19410 -19.49696 -18.76791 -18.30923 -17.96578 -17.21990 -16.83538 -16.66464 -16.31053 -15.80646 -15.77226 -15.57564 -15.33685 -14.88100 -14.83011 -14.44490 -14.33587 -14.06069 -13.95588 -13.74992 -13.63099 -13.48794 -13.37748 -13.22728 -13.03893 -12.99596 -12.93771 -12.70800 -12.41776 -12.33972 -12.19998 -12.18830 -11.97154 -11.95243 -11.81823 -11.26215 -11.01713 -10.74920 -10.49873 -9.96677 -9.48027 -9.05855 -8.69245 -7.87462 -5.34417 0.81030 1.47650 1.50245 1.53791 1.59212 1.84691 2.48898 2.54124 2.66208 3.18535 3.28684 3.64505 3.67712 3.80549 3.90884 3.98424 4.02693 4.08419 4.10210 4.21311 4.29149 4.38202 4.40285 4.54946 4.56545 4.67136 4.69800 4.71056 4.81217 4.83310 4.86403 4.89548 4.95108 5.01275 5.06966 5.08182 5.14525 5.24263 5.25216 5.31181 5.42009 5.62372 5.67384 5.71790 5.82657 6.15867 6.36408 6.42313 6.76183 6.90948 7.12859 7.44409 7.81719 8.34344 9.18757 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003049 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.981549 B = 9181.661086 C = 9969.787668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.098 3.902 3 C -0.270 4.270 4 C 0.584 3.416 5 O -0.593 6.593 6 N -0.699 5.699 7 C 0.169 3.831 8 H 0.072 0.928 9 C -0.139 4.139 10 C 0.189 3.811 11 N -0.601 5.601 12 C -0.265 4.265 13 H 0.073 0.927 14 C -0.048 4.048 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.284 1.284 18 H -0.296 1.296 19 H -0.269 1.269 20 C 0.120 3.880 21 C 0.096 3.904 22 H 0.072 0.928 23 O -0.571 6.571 24 C -0.188 4.188 25 C -0.002 4.002 26 N -0.429 5.429 27 C 0.112 3.888 28 C -0.159 4.159 29 C -0.157 4.157 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.053 0.947 37 H -0.001 1.001 38 H 0.249 0.751 39 H 0.070 0.930 40 H 0.021 0.979 41 H 0.394 0.606 42 H 0.141 0.859 43 H 0.195 0.805 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -17.693 11.652 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.021 4.021 3 C -0.279 4.279 4 C 0.374 3.626 5 O -0.477 6.477 6 N -0.348 5.348 7 C 0.064 3.936 8 H 0.090 0.910 9 C -0.179 4.179 10 C 0.063 3.937 11 N -0.325 5.325 12 C -0.395 4.395 13 H 0.091 0.909 14 C -0.244 4.244 15 N -0.577 5.577 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.223 1.223 19 H -0.194 1.194 20 C -0.007 4.007 21 C 0.035 3.965 22 H 0.089 0.911 23 O -0.378 6.378 24 C -0.212 4.212 25 C -0.128 4.128 26 N -0.105 5.105 27 C 0.012 3.988 28 C -0.217 4.217 29 C -0.215 4.215 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.238 0.762 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.244 0.756 42 H 0.159 0.841 43 H 0.212 0.788 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.118 0.882 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.192 -18.303 11.377 22.423 hybrid contribution 1.382 1.307 -0.921 2.113 sum -4.810 -16.996 10.457 20.526 Atomic orbital electron populations 1.20503 0.86413 1.04116 1.03397 1.20469 0.94418 0.85504 1.01676 1.20216 0.94863 0.91419 1.21451 1.17763 0.84971 0.85206 0.74611 1.90632 1.17755 1.85181 1.54135 1.45656 1.09841 1.05213 1.74123 1.20667 0.96883 0.80603 0.95425 0.90994 1.22373 0.99027 1.00974 0.95522 1.20424 0.84968 0.93230 0.95089 1.44167 1.34758 1.46384 1.07223 1.19511 1.26970 1.02288 0.90696 0.90934 1.25815 1.00781 0.98675 0.99106 1.70196 1.53931 1.24358 1.09244 0.85289 0.77717 0.79818 0.77659 1.21040 1.22269 1.19386 1.21649 0.95382 0.98508 0.85124 1.22346 0.95387 0.97045 0.81731 0.91056 1.86476 1.62615 1.64137 1.24550 1.22137 0.95169 0.94843 1.09020 1.21910 0.86588 0.95440 1.08884 1.44081 1.05419 1.06243 1.54793 1.21862 1.01206 0.77434 0.98289 1.22165 1.02474 1.01590 0.95451 1.22154 1.02496 1.01614 0.95206 0.90540 0.90475 0.89043 0.76243 0.92682 0.91084 0.92829 0.98308 0.94186 0.91126 0.96120 0.75583 0.84107 0.78840 0.87173 0.91486 0.88154 0.93206 0.92739 0.88237 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 9.35 71.24 0.67 -1.43 16 2 C 0.10 2.74 6.89 41.78 0.29 3.03 16 3 C -0.27 -9.21 6.29 -19.04 -0.12 -9.33 16 4 C 0.58 23.26 7.77 86.62 0.67 23.93 16 5 O -0.59 -26.03 14.47 -4.10 -0.06 -26.09 16 6 N -0.70 -26.98 4.15 -445.82 -1.85 -28.83 16 7 C 0.17 6.59 2.47 45.02 0.11 6.70 16 8 H 0.07 2.90 7.58 -2.39 -0.02 2.89 16 9 C -0.14 -5.91 5.77 30.66 0.18 -5.73 16 10 C 0.19 9.43 5.05 86.35 0.44 9.87 16 11 N -0.60 -29.55 2.99 -699.14 -2.09 -31.64 16 12 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 13 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 14 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 15 N -0.93 -55.11 11.20 21.65 0.24 -54.87 16 16 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 C 0.12 4.73 5.84 86.36 0.50 5.23 16 21 C 0.10 3.33 3.36 30.67 0.10 3.44 16 22 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 23 O -0.57 -17.13 13.21 -148.98 -1.97 -19.10 16 24 C -0.19 -5.51 10.56 23.62 0.25 -5.26 16 25 C 0.00 -0.04 10.17 83.12 0.85 0.81 16 26 N -0.43 -9.13 2.57 -487.58 -1.25 -10.38 16 27 C 0.11 1.43 3.45 44.99 0.16 1.58 16 28 C -0.16 -1.67 9.22 71.98 0.66 -1.01 16 29 C -0.16 -1.43 9.23 71.98 0.66 -0.77 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.27 6.47 -2.39 -0.02 2.26 16 32 H 0.09 1.50 6.94 -2.38 -0.02 1.48 16 33 H 0.40 15.19 5.99 -92.71 -0.56 14.64 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.05 3.04 6.06 -2.38 -0.01 3.02 16 37 H 0.00 -0.06 7.74 -2.38 -0.02 -0.08 16 38 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 40 H 0.02 0.84 6.65 -2.39 -0.02 0.83 16 41 H 0.39 8.00 9.08 -74.06 -0.67 7.33 16 42 H 0.14 4.02 7.70 -2.91 -0.02 4.00 16 43 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.11 1.18 6.46 -2.39 -0.02 1.16 16 45 H 0.07 0.71 7.88 -2.39 -0.02 0.69 16 46 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.07 0.61 7.89 -2.39 -0.02 0.60 16 Total: -1.00 -73.43 393.15 1.42 -72.02 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.27 Total: 36.98 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.64 Total: 15.45 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -4.95 Total: -125.71 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -2.03 Total: -45.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -73.43 1.42 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090513747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.418 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds