Wall clock time and date at job start Tue Mar 31 2020 18:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36768 * 125.79873 * 2 1 4 4 C 1.47258 * 126.94568 * 359.71384 * 3 2 1 5 5 O 1.21633 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00492 * 179.97438 * 4 3 2 7 7 C 1.46491 * 120.00339 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.45703 * 324.99650 * 7 6 4 9 9 C 1.53038 * 109.46377 * 84.97071 * 7 6 4 10 10 C 1.53190 * 109.31299 * 181.39851 * 9 7 6 11 11 N 1.46925 * 108.76489 * 305.34682 * 10 9 7 12 12 C 1.36938 * 120.62925 * 233.59436 * 11 10 9 13 13 H 1.08000 * 120.00255 * 152.30894 * 12 11 10 14 14 C 1.38813 * 120.00359 * 332.30944 * 12 11 10 15 15 N 1.31625 * 119.99836 * 342.60102 * 14 12 11 16 16 Si 1.86799 * 120.00224 * 162.59888 * 14 12 11 17 17 H 1.48493 * 109.47041 * 94.35150 * 16 14 12 18 18 H 1.48500 * 109.46929 * 214.35166 * 16 14 12 19 19 H 1.48492 * 109.47309 * 334.34830 * 16 14 12 20 20 C 1.46917 * 118.74274 * 53.61787 * 11 10 9 21 21 C 1.53039 * 109.46243 * 205.03073 * 7 6 4 22 22 H 1.09007 * 109.49501 * 298.56857 * 21 7 6 23 23 O 1.42900 * 109.49630 * 58.65643 * 21 7 6 24 24 C 1.46694 * 106.11528 * 179.97438 * 3 2 1 25 25 C 1.34490 * 106.32897 * 359.97438 * 24 3 2 26 26 N 1.34653 * 125.80310 * 179.97438 * 2 1 3 27 27 C 1.46499 * 124.85059 * 0.02562 * 26 2 1 28 28 C 1.53003 * 109.47387 * 120.00249 * 27 26 2 29 29 C 1.52998 * 109.47113 * 240.00421 * 27 26 2 30 30 H 1.09005 * 109.46925 * 90.02545 * 1 2 3 31 31 H 1.08996 * 109.47182 * 210.02314 * 1 2 3 32 32 H 1.09000 * 109.47078 * 330.03143 * 1 2 3 33 33 H 0.97002 * 119.99376 * 0.02562 * 6 4 3 34 34 H 1.08998 * 109.49897 * 301.34315 * 9 7 6 35 35 H 1.09005 * 109.49381 * 61.43796 * 9 7 6 36 36 H 1.09001 * 109.58437 * 185.56824 * 10 9 7 37 37 H 1.09000 * 109.71784 * 65.20743 * 10 9 7 38 38 H 0.97002 * 119.99845 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.59445 * 186.60341 * 20 11 10 40 40 H 1.09008 * 109.70213 * 66.24269 * 20 11 10 41 41 H 0.96711 * 114.00025 * 180.02562 * 23 21 7 42 42 H 1.07993 * 126.83484 * 179.97438 * 24 3 2 43 43 H 1.07996 * 125.56979 * 179.97438 * 25 24 3 44 44 H 1.09003 * 109.47201 * 0.02562 * 27 26 2 45 45 H 1.08996 * 109.47178 * 179.97438 * 28 27 26 46 46 H 1.08996 * 109.47002 * 300.00495 * 28 27 26 47 47 H 1.09003 * 109.46733 * 59.99979 * 28 27 26 48 48 H 1.08999 * 109.47426 * 60.00065 * 29 27 26 49 49 H 1.09005 * 109.47201 * 179.97438 * 29 27 26 50 50 H 1.08997 * 109.47364 * 299.99753 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0059 5 8 0.6839 2.7839 -0.0110 6 7 2.7850 3.5055 -0.0045 7 6 2.3504 4.9045 -0.0098 8 1 1.4411 5.0000 -0.6034 9 6 2.0723 5.3575 1.4253 10 6 1.5848 6.8097 1.4127 11 7 2.5714 7.6333 0.7006 12 6 3.1008 8.7514 1.2877 13 1 4.0875 9.0914 1.0100 14 6 2.3693 9.4479 2.2399 15 7 1.0701 9.2609 2.3379 16 14 3.2287 10.6503 3.3823 17 1 3.1463 12.0192 2.8127 18 1 2.5689 10.6271 4.7124 19 1 4.6539 10.2605 3.5299 20 6 2.9787 7.2348 -0.6536 21 6 3.4502 5.7778 -0.6180 22 1 4.3523 5.7020 -0.0107 23 8 3.7308 5.3345 -1.9472 24 6 3.6883 0.6152 0.0006 25 6 3.6096 -0.7274 0.0015 26 7 2.2948 -1.0921 0.0005 27 6 1.8094 -2.4743 0.0006 28 6 2.3215 -3.1948 -1.2483 29 6 2.3205 -3.1942 1.2502 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5133 33 1 3.7311 3.2915 -0.0001 34 1 1.3056 4.7203 1.8659 35 1 2.9875 5.2859 2.0131 36 1 1.4799 7.1688 2.4365 37 1 0.6228 6.8702 0.9039 38 1 0.5589 9.7474 3.0036 39 1 3.7934 7.8743 -0.9933 40 1 2.1325 7.3284 -1.3344 41 1 4.4205 5.8441 -2.3944 42 1 4.5890 1.2110 0.0004 43 1 4.4497 -1.4059 0.0018 44 1 0.7194 -2.4767 -0.0003 45 1 1.9608 -4.2233 -1.2480 46 1 1.9575 -2.6819 -2.1385 47 1 3.4115 -3.1924 -1.2478 48 1 1.9556 -2.6810 2.1399 49 1 1.9590 -4.2226 1.2505 50 1 3.4104 -3.1919 1.2507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090513748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:00 Heat of formation + Delta-G solvation = -24.091919 kcal Electronic energy + Delta-G solvation = -29643.558359 eV Core-core repulsion = 25671.893016 eV Total energy + Delta-G solvation = -3971.665344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56383 -39.26816 -37.65527 -35.51934 -35.30903 -34.11020 -31.93832 -31.59727 -30.36355 -29.48549 -28.39696 -27.81648 -26.44454 -25.03439 -23.05838 -22.43688 -22.10712 -21.33376 -19.68430 -19.21250 -18.65784 -17.41686 -17.01104 -16.49031 -16.06474 -15.58280 -15.43963 -14.92464 -14.74462 -14.16160 -14.08091 -13.83358 -13.76736 -13.46725 -13.34970 -13.12072 -12.99365 -12.89709 -12.80019 -12.54868 -12.47221 -12.40441 -12.15393 -11.93314 -11.67471 -11.55393 -11.48743 -11.46171 -11.05125 -10.82659 -10.56608 -10.23947 -10.19015 -9.88205 -9.65623 -9.57884 -9.24818 -8.70350 -8.55414 -8.35271 -8.09449 -6.70981 -5.79825 -3.23307 1.87148 2.41602 2.60469 3.37322 3.44692 3.46736 3.78638 3.90241 4.12171 4.42603 4.44056 4.50019 4.61699 4.63735 4.83740 4.98805 5.09358 5.16326 5.18109 5.23313 5.35600 5.37598 5.44131 5.51894 5.54992 5.58146 5.61488 5.64339 5.68724 5.87945 5.90290 5.97905 6.09421 6.18948 6.26355 6.48157 6.57463 6.68309 6.76736 6.77946 6.86031 7.02954 7.11550 7.19531 7.37852 7.68254 7.78042 8.02003 8.08276 8.43223 8.79831 9.18607 9.81366 10.37644 11.28697 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002395 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.980568 B =11688.571366 C =12007.005206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.229 4.229 4 C 0.589 3.411 5 O -0.555 6.555 6 N -0.712 5.712 7 C 0.165 3.835 8 H 0.086 0.914 9 C -0.145 4.145 10 C 0.171 3.829 11 N -0.588 5.588 12 C -0.257 4.257 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.899 5.899 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.121 3.879 21 C 0.080 3.920 22 H 0.055 0.945 23 O -0.570 6.570 24 C -0.166 4.166 25 C -0.018 4.018 26 N -0.438 5.438 27 C 0.120 3.880 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.372 0.628 42 H 0.143 0.857 43 H 0.161 0.839 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -25.754 -5.248 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 C -0.238 4.238 4 C 0.377 3.623 5 O -0.435 6.435 6 N -0.360 5.360 7 C 0.061 3.939 8 H 0.104 0.896 9 C -0.186 4.186 10 C 0.045 3.955 11 N -0.312 5.312 12 C -0.387 4.387 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.543 5.543 16 Si 0.733 3.267 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.006 4.006 21 C 0.019 3.981 22 H 0.073 0.927 23 O -0.374 6.374 24 C -0.190 4.190 25 C -0.144 4.144 26 N -0.115 5.115 27 C 0.018 3.982 28 C -0.220 4.220 29 C -0.220 4.220 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.218 0.782 42 H 0.160 0.840 43 H 0.178 0.822 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.361 -26.238 -4.994 26.919 hybrid contribution 1.498 0.923 0.478 1.823 sum 4.859 -25.315 -4.516 26.169 Atomic orbital electron populations 1.20561 0.87328 1.03930 1.03231 1.20290 0.93670 0.85148 1.02379 1.20219 0.93078 0.92193 1.18353 1.17315 0.85458 0.83931 0.75587 1.90722 1.16672 1.84410 1.51719 1.45825 1.09301 1.06035 1.74862 1.20928 0.97325 0.78324 0.97293 0.89575 1.22587 1.01230 1.00491 0.94260 1.20831 0.90206 0.84901 0.99573 1.44045 1.49341 1.27257 1.10602 1.19151 0.97436 1.02730 1.19343 0.91605 1.25066 0.94895 0.98005 1.01561 1.70048 1.04597 1.43954 1.35665 0.86278 0.79003 0.80925 0.80534 1.21427 1.21496 1.20417 1.21521 0.98284 0.91640 0.89200 1.22774 0.96947 0.96003 0.82360 0.92732 1.86508 1.61428 1.60607 1.28832 1.21992 0.95865 0.93452 1.07729 1.21468 0.85616 0.95897 1.11398 1.43792 1.05832 1.05364 1.56551 1.21492 1.00483 0.79389 0.96849 1.22163 1.02307 1.00653 0.96834 1.22170 1.02333 1.00679 0.96847 0.90695 0.92313 0.87853 0.77221 0.91924 0.92482 0.88979 0.95828 0.93500 0.92299 0.95365 0.78210 0.83956 0.82173 0.88159 0.90680 0.91650 0.91650 0.91634 0.90681 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.33 36.01 0.34 -0.73 16 2 C 0.10 1.30 6.89 -81.89 -0.56 0.74 16 3 C -0.23 -3.39 6.29 -103.35 -0.65 -4.04 16 4 C 0.59 10.53 7.77 -12.59 -0.10 10.44 16 5 O -0.56 -11.57 14.48 5.25 0.08 -11.49 16 6 N -0.71 -12.07 4.91 -54.90 -0.27 -12.34 16 7 C 0.17 3.20 2.12 -67.90 -0.14 3.06 16 8 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 9 C -0.15 -3.03 5.65 -26.61 -0.15 -3.18 16 10 C 0.17 4.23 5.31 -3.71 -0.02 4.21 16 11 N -0.59 -14.81 2.99 -172.33 -0.52 -15.32 16 12 C -0.26 -7.00 9.58 -15.06 -0.14 -7.15 16 13 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 14 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 15 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 16 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.12 2.56 6.14 -3.72 -0.02 2.53 16 21 C 0.08 1.44 3.14 -26.61 -0.08 1.36 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 O -0.57 -9.12 13.16 -35.23 -0.46 -9.58 16 24 C -0.17 -1.98 10.56 -37.49 -0.40 -2.38 16 25 C -0.02 -0.18 10.17 -16.82 -0.17 -0.35 16 26 N -0.44 -4.33 2.56 -105.46 -0.27 -4.60 16 27 C 0.12 0.78 3.45 -67.93 -0.23 0.55 16 28 C -0.16 -0.83 9.23 37.16 0.34 -0.49 16 29 C -0.16 -0.85 9.22 37.16 0.34 -0.51 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.50 6.96 -51.93 -0.36 0.14 16 32 H 0.10 1.45 6.48 -51.93 -0.34 1.11 16 33 H 0.39 5.78 7.73 -40.82 -0.32 5.47 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 2.51 6.04 -51.93 -0.31 2.20 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.37 4.30 9.09 45.56 0.41 4.72 16 42 H 0.14 1.45 7.69 -52.49 -0.40 1.05 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.10 0.59 6.47 -51.93 -0.34 0.26 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -33.90 397.38 -9.08 -42.98 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.48 Total: 9.39 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.74 Total: 4.07 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.44 Total: -57.91 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.39 Total: -21.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.90 -9.08 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090513748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.892 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds