Wall clock time and date at job start Tue Mar 31 2020 18:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36768 * 125.79873 * 2 1 4 4 C 1.47258 * 126.94568 * 359.71384 * 3 2 1 5 5 O 1.21633 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00492 * 179.97438 * 4 3 2 7 7 C 1.46491 * 120.00339 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.45703 * 324.99650 * 7 6 4 9 9 C 1.53038 * 109.46377 * 84.97071 * 7 6 4 10 10 C 1.53190 * 109.31299 * 181.39851 * 9 7 6 11 11 N 1.46925 * 108.76489 * 305.34682 * 10 9 7 12 12 C 1.36938 * 120.62925 * 233.59436 * 11 10 9 13 13 H 1.08000 * 120.00255 * 152.30894 * 12 11 10 14 14 C 1.38813 * 120.00359 * 332.30944 * 12 11 10 15 15 N 1.31625 * 119.99836 * 342.60102 * 14 12 11 16 16 Si 1.86799 * 120.00224 * 162.59888 * 14 12 11 17 17 H 1.48493 * 109.47041 * 94.35150 * 16 14 12 18 18 H 1.48500 * 109.46929 * 214.35166 * 16 14 12 19 19 H 1.48492 * 109.47309 * 334.34830 * 16 14 12 20 20 C 1.46917 * 118.74274 * 53.61787 * 11 10 9 21 21 C 1.53039 * 109.46243 * 205.03073 * 7 6 4 22 22 H 1.09007 * 109.49501 * 298.56857 * 21 7 6 23 23 O 1.42900 * 109.49630 * 58.65643 * 21 7 6 24 24 C 1.46694 * 106.11528 * 179.97438 * 3 2 1 25 25 C 1.34490 * 106.32897 * 359.97438 * 24 3 2 26 26 N 1.34653 * 125.80310 * 179.97438 * 2 1 3 27 27 C 1.46499 * 124.85059 * 0.02562 * 26 2 1 28 28 C 1.53003 * 109.47387 * 120.00249 * 27 26 2 29 29 C 1.52998 * 109.47113 * 240.00421 * 27 26 2 30 30 H 1.09005 * 109.46925 * 90.02545 * 1 2 3 31 31 H 1.08996 * 109.47182 * 210.02314 * 1 2 3 32 32 H 1.09000 * 109.47078 * 330.03143 * 1 2 3 33 33 H 0.97002 * 119.99376 * 0.02562 * 6 4 3 34 34 H 1.08998 * 109.49897 * 301.34315 * 9 7 6 35 35 H 1.09005 * 109.49381 * 61.43796 * 9 7 6 36 36 H 1.09001 * 109.58437 * 185.56824 * 10 9 7 37 37 H 1.09000 * 109.71784 * 65.20743 * 10 9 7 38 38 H 0.97002 * 119.99845 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.59445 * 186.60341 * 20 11 10 40 40 H 1.09008 * 109.70213 * 66.24269 * 20 11 10 41 41 H 0.96711 * 114.00025 * 180.02562 * 23 21 7 42 42 H 1.07993 * 126.83484 * 179.97438 * 24 3 2 43 43 H 1.07996 * 125.56979 * 179.97438 * 25 24 3 44 44 H 1.09003 * 109.47201 * 0.02562 * 27 26 2 45 45 H 1.08996 * 109.47178 * 179.97438 * 28 27 26 46 46 H 1.08996 * 109.47002 * 300.00495 * 28 27 26 47 47 H 1.09003 * 109.46733 * 59.99979 * 28 27 26 48 48 H 1.08999 * 109.47426 * 60.00065 * 29 27 26 49 49 H 1.09005 * 109.47201 * 179.97438 * 29 27 26 50 50 H 1.08997 * 109.47364 * 299.99753 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0059 5 8 0.6839 2.7839 -0.0110 6 7 2.7850 3.5055 -0.0045 7 6 2.3504 4.9045 -0.0098 8 1 1.4411 5.0000 -0.6034 9 6 2.0723 5.3575 1.4253 10 6 1.5848 6.8097 1.4127 11 7 2.5714 7.6333 0.7006 12 6 3.1008 8.7514 1.2877 13 1 4.0875 9.0914 1.0100 14 6 2.3693 9.4479 2.2399 15 7 1.0701 9.2609 2.3379 16 14 3.2287 10.6503 3.3823 17 1 3.1463 12.0192 2.8127 18 1 2.5689 10.6271 4.7124 19 1 4.6539 10.2605 3.5299 20 6 2.9787 7.2348 -0.6536 21 6 3.4502 5.7778 -0.6180 22 1 4.3523 5.7020 -0.0107 23 8 3.7308 5.3345 -1.9472 24 6 3.6883 0.6152 0.0006 25 6 3.6096 -0.7274 0.0015 26 7 2.2948 -1.0921 0.0005 27 6 1.8094 -2.4743 0.0006 28 6 2.3215 -3.1948 -1.2483 29 6 2.3205 -3.1942 1.2502 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5133 33 1 3.7311 3.2915 -0.0001 34 1 1.3056 4.7203 1.8659 35 1 2.9875 5.2859 2.0131 36 1 1.4799 7.1688 2.4365 37 1 0.6228 6.8702 0.9039 38 1 0.5589 9.7474 3.0036 39 1 3.7934 7.8743 -0.9933 40 1 2.1325 7.3284 -1.3344 41 1 4.4205 5.8441 -2.3944 42 1 4.5890 1.2110 0.0004 43 1 4.4497 -1.4059 0.0018 44 1 0.7194 -2.4767 -0.0003 45 1 1.9608 -4.2233 -1.2480 46 1 1.9575 -2.6819 -2.1385 47 1 3.4115 -3.1924 -1.2478 48 1 1.9556 -2.6810 2.1399 49 1 1.9590 -4.2226 1.2505 50 1 3.4104 -3.1919 1.2507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090513748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:59 Heat of formation + Delta-G solvation = -47.793607 kcal Electronic energy + Delta-G solvation = -29644.586142 eV Core-core repulsion = 25671.893016 eV Total energy + Delta-G solvation = -3972.693126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42278 -40.74253 -39.18371 -36.97016 -36.13204 -35.67793 -33.76776 -32.55815 -31.90559 -30.71899 -29.99471 -28.18579 -27.58006 -26.74507 -24.43093 -23.82322 -23.18130 -22.82228 -21.30354 -20.50520 -19.54031 -18.88672 -18.20946 -17.99804 -17.29395 -17.00797 -16.69719 -16.31034 -15.76532 -15.64896 -15.46538 -15.33230 -14.93428 -14.78164 -14.46794 -14.38806 -14.03439 -13.98653 -13.84696 -13.59774 -13.56074 -13.37373 -13.26677 -13.03627 -12.96809 -12.93910 -12.70974 -12.42519 -12.35790 -12.20031 -12.09155 -12.05355 -11.95437 -11.86785 -11.35209 -11.08529 -10.75703 -10.55097 -9.99457 -9.47893 -9.05924 -8.76485 -7.89616 -5.37021 0.79410 1.48209 1.50067 1.56144 1.60295 1.83293 2.45658 2.49859 2.64212 3.14883 3.27876 3.64098 3.64628 3.79928 3.88374 3.98474 4.02865 4.08820 4.09295 4.21735 4.23795 4.37076 4.40787 4.54845 4.55885 4.66215 4.68462 4.71550 4.81910 4.83177 4.85763 4.87223 4.96175 4.99501 5.04767 5.07358 5.12555 5.24313 5.25055 5.30995 5.38009 5.59621 5.62156 5.66001 5.83971 6.16678 6.34170 6.42230 6.77308 6.90497 7.09748 7.45107 7.78132 8.31611 9.17984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002395 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.980568 B =11688.571366 C =12007.005206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.267 4.267 4 C 0.581 3.419 5 O -0.597 6.597 6 N -0.702 5.702 7 C 0.173 3.827 8 H 0.052 0.948 9 C -0.127 4.127 10 C 0.181 3.819 11 N -0.603 5.603 12 C -0.265 4.265 13 H 0.078 0.922 14 C -0.053 4.053 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.264 1.264 20 C 0.118 3.882 21 C 0.103 3.897 22 H 0.072 0.928 23 O -0.570 6.570 24 C -0.182 4.182 25 C -0.003 4.003 26 N -0.429 5.429 27 C 0.111 3.889 28 C -0.157 4.157 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.408 0.592 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.063 0.937 37 H -0.009 1.009 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.011 0.989 41 H 0.395 0.605 42 H 0.157 0.843 43 H 0.198 0.802 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 -28.502 -5.604 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C -0.277 4.277 4 C 0.372 3.628 5 O -0.480 6.480 6 N -0.351 5.351 7 C 0.068 3.932 8 H 0.070 0.930 9 C -0.167 4.167 10 C 0.055 3.945 11 N -0.328 5.328 12 C -0.394 4.394 13 H 0.095 0.905 14 C -0.248 4.248 15 N -0.583 5.583 16 Si 0.800 3.200 17 H -0.212 1.212 18 H -0.221 1.221 19 H -0.189 1.189 20 C -0.008 4.008 21 C 0.042 3.958 22 H 0.090 0.910 23 O -0.378 6.378 24 C -0.205 4.205 25 C -0.129 4.129 26 N -0.105 5.105 27 C 0.011 3.989 28 C -0.215 4.215 29 C -0.216 4.216 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.009 0.991 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.029 0.971 41 H 0.245 0.755 42 H 0.174 0.826 43 H 0.214 0.786 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.388 -29.024 -5.390 30.204 hybrid contribution 0.549 1.675 0.491 1.829 sum 6.937 -27.350 -4.899 28.638 Atomic orbital electron populations 1.20491 0.87061 1.03825 1.03337 1.20420 0.94205 0.85843 1.01978 1.20158 0.95305 0.90754 1.21483 1.17895 0.84929 0.85388 0.74583 1.90696 1.18414 1.85219 1.53655 1.45602 1.10016 1.04724 1.74741 1.20578 0.96830 0.80243 0.95581 0.93002 1.22306 1.01113 0.97543 0.95760 1.20536 0.89324 0.87228 0.97444 1.44254 1.49150 1.27113 1.12275 1.19573 0.97827 1.02835 1.19209 0.90479 1.25916 0.95423 1.00225 1.03279 1.70222 1.06198 1.45459 1.36409 0.85195 0.78404 0.78533 0.77893 1.21223 1.22121 1.18862 1.21684 0.98185 0.94132 0.86838 1.22302 0.96618 0.93156 0.83720 0.90975 1.86480 1.62659 1.60854 1.27772 1.22206 0.94946 0.94598 1.08757 1.22011 0.86344 0.95745 1.08798 1.44079 1.05677 1.06049 1.54740 1.21846 1.01062 0.77616 0.98382 1.22148 1.02618 1.01474 0.95229 1.22157 1.02643 1.01506 0.95255 0.90463 0.89327 0.90977 0.75552 0.92779 0.91399 0.91839 0.99120 0.94027 0.90468 0.97114 0.75489 0.82563 0.78564 0.87647 0.88433 0.93012 0.91103 0.93049 0.88431 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 9.33 71.24 0.66 -1.42 16 2 C 0.09 2.36 6.89 41.78 0.29 2.65 16 3 C -0.27 -7.89 6.29 -19.04 -0.12 -8.01 16 4 C 0.58 21.45 7.77 86.61 0.67 22.12 16 5 O -0.60 -26.43 14.48 -4.14 -0.06 -26.49 16 6 N -0.70 -23.86 4.91 -445.83 -2.19 -26.06 16 7 C 0.17 6.84 2.12 45.02 0.10 6.93 16 8 H 0.05 2.42 7.58 -2.38 -0.02 2.41 16 9 C -0.13 -5.47 5.65 30.67 0.17 -5.30 16 10 C 0.18 9.43 5.31 86.36 0.46 9.89 16 11 N -0.60 -30.92 2.99 -699.12 -2.09 -33.01 16 12 C -0.26 -14.45 9.58 84.03 0.81 -13.64 16 13 H 0.08 3.97 7.89 -2.91 -0.02 3.95 16 14 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 15 N -0.94 -56.82 11.19 21.65 0.24 -56.57 16 16 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 C 0.12 4.97 6.14 86.36 0.53 5.50 16 21 C 0.10 3.61 3.14 30.67 0.10 3.70 16 22 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 23 O -0.57 -17.12 13.16 -148.98 -1.96 -19.08 16 24 C -0.18 -4.00 10.56 23.62 0.25 -3.75 16 25 C 0.00 -0.04 10.17 83.12 0.85 0.80 16 26 N -0.43 -7.53 2.56 -487.57 -1.25 -8.78 16 27 C 0.11 1.12 3.45 44.99 0.16 1.27 16 28 C -0.16 -1.09 9.23 71.98 0.66 -0.42 16 29 C -0.16 -1.12 9.22 71.98 0.66 -0.45 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.09 1.43 6.96 -2.39 -0.02 1.41 16 32 H 0.07 2.16 6.48 -2.39 -0.02 2.15 16 33 H 0.41 11.48 7.73 -92.71 -0.72 10.76 16 34 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.06 3.65 6.04 -2.39 -0.01 3.64 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.08 2.93 7.93 -2.39 -0.02 2.91 16 40 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.40 7.93 9.09 -74.05 -0.67 7.26 16 42 H 0.16 2.83 7.69 -2.91 -0.02 2.81 16 43 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.11 0.96 6.47 -2.39 -0.02 0.94 16 45 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.43 7.88 -2.39 -0.02 0.41 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 50 H 0.07 0.45 7.88 -2.39 -0.02 0.43 16 Total: -1.00 -77.49 397.38 0.94 -76.55 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.44 Total: 29.33 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.66 Total: 17.30 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -5.29 Total: -124.42 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.02 Total: -45.56 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.49 0.94 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090513748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds