Wall clock time and date at job start Tue Mar 31 2020 18:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36769 * 125.80307 * 2 1 4 4 C 1.47267 * 126.94165 * 359.97438 * 3 2 1 5 5 O 1.21624 * 119.99665 * 359.97438 * 4 3 2 6 6 N 1.34768 * 120.00228 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00281 * 179.97438 * 6 4 3 8 8 H 1.08990 * 109.44763 * 324.96378 * 7 6 4 9 9 C 1.53042 * 109.46045 * 84.93072 * 7 6 4 10 10 C 1.52760 * 109.38363 * 181.26060 * 9 7 6 11 11 N 1.46921 * 109.01057 * 305.58794 * 10 9 7 12 12 C 1.36932 * 120.63174 * 233.58791 * 11 10 9 13 13 H 1.08002 * 120.00343 * 152.17256 * 12 11 10 14 14 C 1.38815 * 119.99520 * 331.89167 * 12 11 10 15 15 N 1.31619 * 120.00204 * 343.16792 * 14 12 11 16 16 Si 1.86804 * 119.99843 * 163.16785 * 14 12 11 17 17 H 1.48503 * 109.47110 * 60.00230 * 16 14 12 18 18 H 1.48499 * 109.47407 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47053 * 300.00236 * 16 14 12 20 20 C 1.46925 * 118.73818 * 53.30568 * 11 10 9 21 21 C 1.53042 * 109.45926 * 204.99742 * 7 6 4 22 22 H 1.08993 * 109.52509 * 58.64533 * 21 7 6 23 23 O 1.42897 * 109.49820 * 298.56194 * 21 7 6 24 24 C 1.46688 * 106.11559 * 180.24340 * 3 2 1 25 25 C 1.34482 * 106.33092 * 359.57566 * 24 3 2 26 26 N 1.34655 * 125.80412 * 179.97438 * 2 1 3 27 27 C 1.46509 * 124.85031 * 0.03454 * 26 2 1 28 28 C 1.52998 * 109.47177 * 119.99912 * 27 26 2 29 29 C 1.52998 * 109.47080 * 240.00684 * 27 26 2 30 30 H 1.08996 * 109.47235 * 90.01434 * 1 2 3 31 31 H 1.09002 * 109.46741 * 210.01998 * 1 2 3 32 32 H 1.08996 * 109.46827 * 330.01422 * 1 2 3 33 33 H 0.97010 * 120.00296 * 359.97438 * 6 4 3 34 34 H 1.09005 * 109.49336 * 301.33734 * 9 7 6 35 35 H 1.09001 * 109.49853 * 61.42956 * 9 7 6 36 36 H 1.08999 * 109.50888 * 185.69982 * 10 9 7 37 37 H 1.09005 * 109.42847 * 65.42578 * 10 9 7 38 38 H 0.97002 * 119.99648 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.58924 * 66.43354 * 20 11 10 40 40 H 1.09000 * 109.58889 * 186.85691 * 20 11 10 41 41 H 0.96705 * 114.00012 * 180.16053 * 23 21 7 42 42 H 1.08005 * 126.82801 * 179.74200 * 24 3 2 43 43 H 1.08002 * 125.56918 * 180.14136 * 25 24 3 44 44 H 1.09001 * 109.46664 * 0.02562 * 27 26 2 45 45 H 1.09001 * 109.46779 * 60.00736 * 28 27 26 46 46 H 1.08997 * 109.47069 * 180.02562 * 28 27 26 47 47 H 1.08998 * 109.47251 * 300.00562 * 28 27 26 48 48 H 1.08991 * 109.47654 * 59.99853 * 29 27 26 49 49 H 1.09002 * 109.46589 * 180.02562 * 29 27 26 50 50 H 1.09000 * 109.47015 * 299.99041 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7850 3.5054 0.0001 7 6 2.3504 4.9044 -0.0010 8 1 1.4398 5.0011 -0.5921 9 6 2.0758 5.3542 1.4358 10 6 1.5928 6.8034 1.4299 11 7 2.5733 7.6317 0.7150 12 6 3.1050 8.7479 1.3037 13 1 4.0902 9.0894 1.0225 14 6 2.3752 9.4438 2.2576 15 7 1.0776 9.2505 2.3637 16 14 3.2347 10.6548 3.3909 17 1 3.8755 11.7217 2.5808 18 1 2.2406 11.2626 4.3114 19 1 4.2713 9.9431 4.1809 20 6 2.9772 7.2362 -0.6411 21 6 3.4488 5.7790 -0.6100 22 1 3.6609 5.4434 -1.6250 23 8 4.6333 5.6780 0.1830 24 6 3.6882 0.6151 -0.0060 25 6 3.6095 -0.7274 0.0005 26 7 2.2948 -1.0921 0.0005 27 6 1.8094 -2.4744 0.0004 28 6 2.3216 -3.1947 -1.2485 29 6 2.3203 -3.1944 1.2500 30 1 -0.3633 -0.0003 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5136 33 1 3.7312 3.2915 0.0012 34 1 1.3100 4.7159 1.8767 35 1 2.9923 5.2810 2.0214 36 1 1.4934 7.1581 2.4558 37 1 0.6281 6.8620 0.9258 38 1 0.5678 9.7365 3.0306 39 1 2.1278 7.3309 -1.3176 40 1 3.7910 7.8765 -0.9814 41 1 5.3720 6.2098 -0.1438 42 1 4.5890 1.2109 -0.0115 43 1 4.4498 -1.4060 0.0007 44 1 0.7194 -2.4768 -0.0006 45 1 3.4116 -3.1924 -1.2479 46 1 1.9602 -4.2230 -1.2488 47 1 1.9577 -2.6817 -2.1387 48 1 1.9554 -2.6813 2.1397 49 1 1.9595 -4.2230 1.2496 50 1 3.4103 -3.1921 1.2506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090513750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:08 Heat of formation + Delta-G solvation = -45.417822 kcal Electronic energy + Delta-G solvation = -29754.792528 eV Core-core repulsion = 25782.202424 eV Total energy + Delta-G solvation = -3972.590104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.42532 -40.74838 -39.22248 -36.57566 -36.13403 -35.59204 -33.66705 -32.55619 -31.87750 -30.82327 -30.09487 -28.18812 -27.56565 -26.70944 -24.38785 -23.84247 -23.18954 -22.80523 -21.14989 -20.46483 -19.53295 -18.97239 -18.21887 -17.50585 -17.25854 -17.00440 -16.49997 -16.31644 -15.87570 -15.57300 -15.48046 -15.32217 -15.17884 -14.73057 -14.49907 -14.39970 -14.03195 -13.96118 -13.74681 -13.69151 -13.53568 -13.37776 -13.03956 -12.97483 -12.93598 -12.75318 -12.62650 -12.44773 -12.40718 -12.20209 -12.06160 -12.05180 -11.95513 -11.89761 -11.39329 -10.87959 -10.74800 -10.48919 -9.96803 -9.48100 -9.06108 -8.66314 -7.84750 -5.30102 0.79070 1.47281 1.51318 1.55602 1.57394 1.83354 2.46805 2.52632 2.63839 3.30223 3.42409 3.63820 3.67095 3.79952 3.86548 3.98313 4.02915 4.08679 4.09374 4.21704 4.29423 4.36807 4.41707 4.55801 4.66572 4.68717 4.73189 4.79879 4.82006 4.83013 4.87034 4.89479 4.96806 5.01473 5.01994 5.07265 5.14906 5.24282 5.24892 5.31767 5.46962 5.63115 5.65010 5.70024 5.83893 6.16757 6.38976 6.41967 6.79334 7.01063 7.15359 7.44887 7.84936 8.38254 9.22216 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.002385 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.146708 B =11737.580597 C =11972.008583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.268 4.268 4 C 0.580 3.420 5 O -0.595 6.595 6 N -0.705 5.705 7 C 0.170 3.830 8 H 0.070 0.930 9 C -0.123 4.123 10 C 0.185 3.815 11 N -0.598 5.598 12 C -0.253 4.253 13 H 0.074 0.926 14 C -0.058 4.058 15 N -0.940 5.940 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.298 1.298 19 H -0.280 1.280 20 C 0.112 3.888 21 C 0.101 3.899 22 H 0.083 0.917 23 O -0.563 6.563 24 C -0.182 4.182 25 C -0.003 4.003 26 N -0.429 5.429 27 C 0.112 3.888 28 C -0.157 4.157 29 C -0.159 4.159 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.054 0.946 37 H -0.009 1.009 38 H 0.248 0.752 39 H 0.023 0.977 40 H 0.078 0.922 41 H 0.390 0.610 42 H 0.155 0.845 43 H 0.197 0.803 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -28.788 -8.044 30.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.278 4.278 4 C 0.371 3.629 5 O -0.478 6.478 6 N -0.355 5.355 7 C 0.065 3.935 8 H 0.089 0.911 9 C -0.163 4.163 10 C 0.058 3.942 11 N -0.321 5.321 12 C -0.383 4.383 13 H 0.092 0.908 14 C -0.253 4.253 15 N -0.586 5.586 16 Si 0.798 3.202 17 H -0.196 1.196 18 H -0.225 1.225 19 H -0.206 1.206 20 C -0.015 4.015 21 C 0.039 3.961 22 H 0.101 0.899 23 O -0.370 6.370 24 C -0.206 4.206 25 C -0.129 4.129 26 N -0.106 5.106 27 C 0.011 3.989 28 C -0.214 4.214 29 C -0.216 4.216 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.009 0.991 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.239 0.761 42 H 0.173 0.827 43 H 0.214 0.786 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.116 0.884 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.681 -29.259 -7.616 30.763 hybrid contribution 0.557 1.582 0.529 1.759 sum 6.238 -27.676 -7.087 29.242 Atomic orbital electron populations 1.20496 0.86977 1.03797 1.03453 1.20434 0.94228 0.85800 1.01884 1.20168 0.95214 0.90851 1.21567 1.17906 0.84957 0.85377 0.74683 1.90696 1.18298 1.85195 1.53594 1.45719 1.10214 1.04799 1.74721 1.20659 0.96435 0.80088 0.96290 0.91149 1.22108 0.99959 0.97309 0.96964 1.20363 0.89409 0.87342 0.97094 1.44079 1.49237 1.26556 1.12199 1.19491 0.97578 1.02312 1.18934 0.90806 1.25868 0.95446 1.00507 1.03480 1.70207 1.06234 1.45725 1.36452 0.85299 0.77265 0.78852 0.78771 1.19632 1.22482 1.20611 1.21802 0.98512 0.94482 0.86656 1.22343 0.85321 0.94797 0.93601 0.89920 1.86424 1.22706 1.71506 1.56361 1.22205 0.95001 0.94599 1.08756 1.22000 0.86363 0.95740 1.08819 1.44086 1.05662 1.06080 1.54731 1.21847 1.01079 0.77610 0.98352 1.22144 1.02594 1.01474 0.95222 1.22160 1.02628 1.01531 0.95311 0.90203 0.89441 0.90990 0.75297 0.94237 0.92531 0.92779 0.99064 0.94280 0.95937 0.90369 0.76121 0.82707 0.78639 0.87587 0.91138 0.88463 0.92883 0.93121 0.88411 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.02 9.34 71.24 0.67 -1.36 16 2 C 0.10 2.33 6.89 41.78 0.29 2.62 16 3 C -0.27 -7.77 6.29 -19.04 -0.12 -7.89 16 4 C 0.58 20.84 7.77 86.62 0.67 21.52 16 5 O -0.59 -25.52 14.48 -4.11 -0.06 -25.58 16 6 N -0.70 -23.57 5.05 -445.84 -2.25 -25.82 16 7 C 0.17 6.57 2.20 45.02 0.10 6.67 16 8 H 0.07 3.00 7.58 -2.39 -0.02 2.99 16 9 C -0.12 -5.60 5.50 30.53 0.17 -5.43 16 10 C 0.18 9.87 5.28 86.22 0.45 10.32 16 11 N -0.60 -30.84 2.94 -699.93 -2.06 -32.89 16 12 C -0.25 -14.04 9.58 84.03 0.81 -13.23 16 13 H 0.07 3.87 7.88 -2.91 -0.02 3.84 16 14 C -0.06 -3.35 4.92 84.86 0.42 -2.94 16 15 N -0.94 -58.15 11.18 21.65 0.24 -57.91 16 16 Si 0.97 46.09 29.59 68.60 2.03 48.12 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 C 0.11 4.53 6.16 86.36 0.53 5.07 16 21 C 0.10 3.36 3.38 30.67 0.10 3.46 16 22 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 23 O -0.56 -17.91 12.09 -148.98 -1.80 -19.71 16 24 C -0.18 -4.00 10.56 23.62 0.25 -3.75 16 25 C 0.00 -0.05 10.17 83.12 0.85 0.80 16 26 N -0.43 -7.40 2.57 -487.57 -1.25 -8.65 16 27 C 0.11 1.09 3.45 44.99 0.15 1.25 16 28 C -0.16 -1.02 9.23 71.98 0.66 -0.35 16 29 C -0.16 -1.14 9.23 71.98 0.66 -0.47 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.38 6.96 -2.39 -0.02 1.36 16 32 H 0.07 2.11 6.47 -2.39 -0.02 2.10 16 33 H 0.41 11.80 7.38 -92.70 -0.68 11.11 16 34 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 2.65 7.61 -2.39 -0.02 2.63 16 36 H 0.05 3.25 6.05 -2.39 -0.01 3.24 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 41 H 0.39 9.27 9.08 -74.05 -0.67 8.60 16 42 H 0.16 2.87 7.70 -2.91 -0.02 2.85 16 43 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 44 H 0.11 0.92 6.47 -2.39 -0.02 0.91 16 45 H 0.07 0.41 7.88 -2.39 -0.02 0.39 16 46 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 47 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.07 0.46 7.88 -2.39 -0.02 0.44 16 Total: -1.00 -77.93 395.65 1.11 -76.82 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.41 Total: 29.36 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.66 Total: 16.28 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -5.32 Total: -125.28 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.86 Total: -45.29 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.93 1.11 -76.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090513750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds