Wall clock time and date at job start Tue Mar 31 2020 19:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54059 * 112.57799 * 2 1 4 4 N 1.48338 * 104.51616 * 97.43689 * 3 2 1 5 5 C 1.36941 * 128.19510 * 221.78985 * 4 3 2 6 6 H 1.07996 * 119.99718 * 163.68926 * 5 4 3 7 7 C 1.38814 * 120.00183 * 343.69425 * 5 4 3 8 8 N 1.31613 * 120.00045 * 350.82035 * 7 5 4 9 9 Si 1.86799 * 120.00023 * 170.82157 * 7 5 4 10 10 H 1.48500 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47115 * 119.99691 * 9 7 5 12 12 H 1.48500 * 109.47349 * 240.00111 * 9 7 5 13 13 C 1.48331 * 103.60403 * 41.53367 * 4 3 2 14 14 C 1.54445 * 104.32226 * 318.43104 * 13 4 3 15 15 H 1.09003 * 112.30674 * 262.44722 * 14 13 4 16 16 C 1.53747 * 109.01365 * 137.36272 * 14 13 4 17 17 N 1.47199 * 106.42938 * 229.46130 * 16 14 13 18 18 C 1.34772 * 126.70115 * 211.40521 * 17 16 14 19 19 O 1.21281 * 120.00156 * 184.26831 * 18 17 16 20 20 C 1.50709 * 120.00023 * 4.26337 * 18 17 16 21 21 C 1.52998 * 109.66862 * 303.17658 * 20 18 17 22 22 C 1.53347 * 109.67187 * 63.67659 * 20 18 17 23 23 C 1.52919 * 108.67468 * 52.20292 * 22 20 18 24 24 N 1.45751 * 110.48737 * 50.75423 * 23 22 20 25 25 C 1.33350 * 124.10954 * 340.89507 * 24 23 22 26 26 O 1.21279 * 118.25007 * 182.22253 * 25 24 23 27 27 C 1.50176 * 123.50467 * 2.27601 * 25 24 23 28 28 C 1.47198 * 106.59460 * 31.36284 * 17 16 14 29 29 H 1.09002 * 109.47240 * 302.11303 * 1 2 3 30 30 H 1.08994 * 109.46807 * 62.11396 * 1 2 3 31 31 H 1.08998 * 109.46903 * 182.11239 * 1 2 3 32 32 H 1.08996 * 110.40163 * 338.64674 * 3 2 1 33 33 H 1.09005 * 110.34314 * 216.19200 * 3 2 1 34 34 H 0.97002 * 120.00356 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.46313 * 77.14288 * 13 4 3 36 36 H 1.09003 * 110.45845 * 199.59257 * 13 4 3 37 37 H 1.09002 * 110.05902 * 348.69728 * 16 14 13 38 38 H 1.08992 * 110.06676 * 110.16096 * 16 14 13 39 39 H 1.08996 * 109.47364 * 65.47155 * 21 20 18 40 40 H 1.09004 * 109.47039 * 185.47051 * 21 20 18 41 41 H 1.08995 * 109.46960 * 305.46860 * 21 20 18 42 42 H 1.08998 * 109.60026 * 171.96092 * 22 20 18 43 43 H 1.08995 * 109.60249 * 292.27921 * 22 20 18 44 44 H 1.08998 * 109.29842 * 171.06705 * 23 22 20 45 45 H 1.08994 * 109.30039 * 290.64280 * 23 22 20 46 46 H 0.96998 * 117.94507 * 160.92826 * 24 23 22 47 47 H 1.09003 * 109.38965 * 222.25379 * 27 25 24 48 48 H 1.08999 * 109.41917 * 102.50857 * 27 25 24 49 49 H 1.08998 * 110.06035 * 87.87483 * 28 17 16 50 50 H 1.08997 * 110.06336 * 209.33854 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1215 1.4225 0.0000 4 7 2.4359 1.6945 1.4239 5 6 2.2329 2.8500 2.1302 6 1 2.2605 2.8350 3.2097 7 6 1.9916 4.0407 1.4585 8 7 2.1354 4.0998 0.1516 9 14 1.4627 5.5589 2.4096 10 1 1.3741 5.2314 3.8554 11 1 2.4585 6.6418 2.2070 12 1 0.1344 6.0104 1.9227 13 6 3.0163 0.4164 1.9034 14 6 2.1222 -0.6712 1.2685 15 1 1.3555 -1.0295 1.9555 16 6 3.0132 -1.8093 0.7446 17 7 2.5824 -2.0727 -0.6380 18 6 2.6111 -3.2580 -1.2787 19 8 2.2972 -3.3229 -2.4484 20 6 3.0333 -4.5029 -0.5417 21 6 4.4314 -4.3037 0.0469 22 6 2.0361 -4.7990 0.5850 23 6 0.6241 -4.8129 -0.0019 24 7 0.5666 -5.6799 -1.1721 25 6 1.6353 -6.0663 -1.8697 26 8 1.4611 -6.7569 -2.8514 27 6 3.0433 -5.6931 -1.5041 28 6 2.1131 -0.7887 -1.1839 29 1 -0.3634 0.5463 0.8704 30 1 -0.3633 0.4806 -0.9083 31 1 -0.3633 -1.0270 0.0379 32 1 1.3889 2.1387 -0.3720 33 1 3.0286 1.4557 -0.6035 34 1 1.9672 4.9319 -0.3177 35 1 4.0453 0.3124 1.5593 36 1 2.9717 0.3620 2.9911 37 1 4.0589 -1.5019 0.7583 38 1 2.8780 -2.7016 1.3557 39 1 4.3971 -3.5256 0.8095 40 1 4.7733 -5.2367 0.4950 41 1 5.1198 -4.0069 -0.7443 42 1 2.2590 -5.7713 1.0245 43 1 2.1091 -4.0264 1.3504 44 1 -0.0753 -5.1767 0.7507 45 1 0.3452 -3.8003 -0.2933 46 1 -0.3038 -5.9952 -1.4619 47 1 3.5924 -5.4245 -2.4066 48 1 3.5304 -6.5423 -1.0247 49 1 2.9474 -0.2418 -1.6230 50 1 1.3424 -0.9611 -1.9352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091782959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:00 Heat of formation + Delta-G solvation = -59.591496 kcal Electronic energy + Delta-G solvation = -31507.126645 eV Core-core repulsion = 27533.921924 eV Total energy + Delta-G solvation = -3973.204721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41200 -41.00869 -39.62838 -37.52116 -36.59342 -35.23496 -34.15469 -32.88706 -31.15360 -30.71350 -29.06954 -28.04348 -27.48992 -26.60526 -24.86035 -24.54303 -22.89280 -22.13908 -21.24697 -20.02118 -19.48336 -18.68407 -18.21634 -17.69620 -17.10421 -16.92745 -16.69338 -16.57566 -16.16147 -15.81640 -15.50642 -15.18922 -15.13696 -14.90544 -14.47249 -14.21136 -14.12553 -13.98313 -13.70589 -13.38859 -13.27376 -13.14031 -13.06181 -13.01899 -12.87405 -12.74647 -12.67266 -12.42788 -12.37454 -12.08728 -11.87546 -11.75415 -11.65174 -11.47398 -11.41298 -11.17897 -10.84531 -10.70789 -10.68542 -10.08503 -9.68995 -8.82612 -7.86654 -5.21967 1.48098 1.49452 1.57690 1.59142 1.64509 1.92955 2.37144 2.51553 3.25129 3.33964 3.42772 3.51759 3.56980 3.61490 3.75986 3.90222 3.98089 4.04245 4.18606 4.28903 4.35371 4.37840 4.39958 4.55478 4.55987 4.62338 4.69248 4.71289 4.73325 4.84378 4.88770 4.94418 4.96328 4.97984 5.04799 5.07795 5.17038 5.24143 5.26452 5.31351 5.36418 5.50328 5.52021 5.58338 5.75944 5.81361 6.23622 6.34175 6.58643 7.05245 7.11000 7.20782 7.74559 8.53755 9.26686 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.003012 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.820072 B = 9293.424480 C = 9473.433593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.083 4.083 3 C 0.175 3.825 4 N -0.618 5.618 5 C -0.227 4.227 6 H 0.085 0.915 7 C -0.064 4.064 8 N -0.948 5.948 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.297 1.297 12 H -0.296 1.296 13 C 0.127 3.873 14 C -0.095 4.095 15 H 0.111 0.889 16 C 0.102 3.898 17 N -0.603 5.603 18 C 0.532 3.468 19 O -0.588 6.588 20 C -0.072 4.072 21 C -0.149 4.149 22 C -0.127 4.127 23 C 0.099 3.901 24 N -0.713 5.713 25 C 0.524 3.476 26 O -0.616 6.616 27 C -0.109 4.109 28 C 0.124 3.876 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.049 0.951 33 H -0.005 1.005 34 H 0.246 0.754 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.047 0.953 46 H 0.400 0.600 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.050 0.950 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -20.732 7.964 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 C 0.049 3.951 4 N -0.341 5.341 5 C -0.356 4.356 6 H 0.102 0.898 7 C -0.257 4.257 8 N -0.596 5.596 9 Si 0.800 3.200 10 H -0.185 1.185 11 H -0.225 1.225 12 H -0.223 1.223 13 C 0.001 3.999 14 C -0.116 4.116 15 H 0.129 0.871 16 C -0.019 4.019 17 N -0.335 5.335 18 C 0.323 3.677 19 O -0.468 6.468 20 C -0.075 4.075 21 C -0.206 4.206 22 C -0.164 4.164 23 C -0.025 4.025 24 N -0.362 5.362 25 C 0.312 3.688 26 O -0.499 6.499 27 C -0.149 4.149 28 C 0.000 4.000 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.013 0.987 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.065 0.935 46 H 0.235 0.765 47 H 0.102 0.898 48 H 0.160 0.840 49 H 0.068 0.932 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.916 -20.839 6.928 21.980 hybrid contribution -0.616 1.765 -0.799 2.033 sum 0.300 -19.074 6.129 20.037 Atomic orbital electron populations 1.21468 0.92765 1.01342 1.01074 1.22225 0.96230 0.95855 0.94251 1.21419 0.95746 0.92119 0.85864 1.45323 1.70802 1.09839 1.08153 1.19394 1.40693 0.84960 0.90601 0.89780 1.25650 1.03156 1.00225 0.96687 1.70089 1.55489 1.26071 1.07991 0.85117 0.76767 0.79473 0.78622 1.18533 1.22478 1.22321 1.22093 0.94360 0.85184 0.98221 1.23042 0.98007 0.94511 0.96018 0.87105 1.22759 0.98436 0.99475 0.81264 1.48539 1.62617 1.06971 1.15333 1.20822 0.76463 0.84150 0.86312 1.90735 1.51265 1.86291 1.18492 1.20937 1.00347 0.90021 0.96232 1.22121 0.91316 1.05579 1.01585 1.22265 0.90938 1.06843 0.96318 1.21670 0.99900 0.93664 0.87229 1.45434 1.09398 1.50502 1.30909 1.20469 0.88897 0.77889 0.81506 1.90704 1.87482 1.42484 1.29220 1.21602 0.92694 0.99367 1.01255 1.21920 0.98057 0.83905 0.96113 0.93166 0.94045 0.91197 0.93264 0.98709 0.94516 0.95337 0.91734 0.90369 0.85753 0.89389 0.87740 0.93002 0.86204 0.86312 0.86391 0.93469 0.76526 0.89753 0.83980 0.93193 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.35 8.60 71.98 0.62 -2.73 16 2 C -0.08 -2.71 1.07 -50.80 -0.05 -2.76 16 3 C 0.17 7.90 5.11 86.38 0.44 8.34 16 4 N -0.62 -28.61 3.38 -687.69 -2.32 -30.93 16 5 C -0.23 -11.81 10.37 84.03 0.87 -10.93 16 6 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 7 C -0.06 -3.46 5.40 84.86 0.46 -3.00 16 8 N -0.95 -55.51 10.90 21.65 0.24 -55.28 16 9 Si 0.97 43.90 29.56 68.60 2.03 45.93 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 13 C 0.13 4.22 6.76 86.52 0.59 4.80 16 14 C -0.10 -2.41 3.73 -9.28 -0.03 -2.45 16 15 H 0.11 2.34 7.95 -2.39 -0.02 2.32 16 16 C 0.10 1.88 4.60 86.50 0.40 2.28 16 17 N -0.60 -14.77 3.31 -815.38 -2.70 -17.47 16 18 C 0.53 13.53 4.97 87.66 0.44 13.96 16 19 O -0.59 -21.16 15.43 -3.03 -0.05 -21.20 16 20 C -0.07 -1.10 0.50 -52.79 -0.03 -1.12 16 21 C -0.15 -1.46 8.14 71.98 0.59 -0.87 16 22 C -0.13 -1.06 4.74 30.68 0.15 -0.92 16 23 C 0.10 1.23 6.60 86.49 0.57 1.81 16 24 N -0.71 -13.81 5.44 -467.34 -2.54 -16.35 16 25 C 0.52 13.50 6.72 87.71 0.59 14.09 16 26 O -0.62 -21.96 17.78 -3.03 -0.05 -22.01 16 27 C -0.11 -2.09 4.47 29.71 0.13 -1.96 16 28 C 0.12 3.92 6.19 86.49 0.54 4.46 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 2.62 6.25 -2.39 -0.01 2.60 16 33 H 0.00 -0.25 7.16 -2.38 -0.02 -0.26 16 34 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 35 H 0.03 0.95 7.17 -2.39 -0.02 0.93 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.46 6.77 -2.39 -0.02 1.44 16 38 H 0.12 1.20 3.75 -2.39 -0.01 1.19 16 39 H 0.09 0.69 4.83 -2.39 -0.01 0.67 16 40 H 0.10 0.41 8.09 -2.38 -0.02 0.39 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.12 0.37 8.12 -2.39 -0.02 0.35 16 43 H 0.12 0.55 5.22 -2.39 -0.01 0.54 16 44 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.05 0.81 7.36 -2.39 -0.02 0.80 16 46 H 0.40 7.36 8.80 -92.71 -0.82 6.54 16 47 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 48 H 0.14 1.62 8.06 -2.39 -0.02 1.60 16 49 H 0.05 1.78 7.10 -2.39 -0.02 1.77 16 50 H 0.06 2.06 7.66 -2.39 -0.02 2.04 16 Total: -1.00 -80.91 372.22 1.00 -79.90 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.15 Total: 14.40 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.25 Total: 23.00 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -7.33 Total: -120.02 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.10 Total: -43.21 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -80.91 1.00 -79.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091782959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.313 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds