Wall clock time and date at job start Tue Mar 31 2020 19:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.54459 * 112.29928 * 2 1 4 4 N 1.48331 * 104.32384 * 96.98801 * 3 2 1 5 5 C 1.36933 * 128.19831 * 221.81332 * 4 3 2 6 6 H 1.08003 * 119.99821 * 15.14888 * 5 4 3 7 7 C 1.38811 * 120.00035 * 195.16006 * 5 4 3 8 8 N 1.31616 * 119.99818 * 9.46393 * 7 5 4 9 9 Si 1.86798 * 119.99929 * 189.46161 * 7 5 4 10 10 H 1.48505 * 109.47067 * 94.83830 * 9 7 5 11 11 H 1.48501 * 109.47313 * 214.83396 * 9 7 5 12 12 H 1.48498 * 109.47385 * 334.83440 * 9 7 5 13 13 C 1.48335 * 103.60427 * 41.80396 * 4 3 2 14 14 C 1.54445 * 104.32584 * 318.19703 * 13 4 3 15 15 H 1.09007 * 112.29883 * 263.00893 * 14 13 4 16 16 C 1.53745 * 109.01813 * 137.35735 * 14 13 4 17 17 N 1.47191 * 106.42988 * 229.45572 * 16 14 13 18 18 C 1.34772 * 126.70213 * 211.34231 * 17 16 14 19 19 O 1.21287 * 120.00034 * 175.60048 * 18 17 16 20 20 C 1.50704 * 120.00058 * 355.60555 * 18 17 16 21 21 C 1.53001 * 109.67118 * 308.56635 * 20 18 17 22 22 C 1.53352 * 109.67365 * 188.03241 * 20 18 17 23 23 C 1.52904 * 108.68463 * 172.74728 * 22 20 18 24 24 N 1.45751 * 110.49554 * 50.72449 * 23 22 20 25 25 C 1.33356 * 124.10909 * 340.96148 * 24 23 22 26 26 O 1.21281 * 118.24428 * 182.17715 * 25 24 23 27 27 C 1.50176 * 123.50356 * 2.19831 * 25 24 23 28 28 C 1.47190 * 106.59511 * 31.36937 * 17 16 14 29 29 H 1.08997 * 109.47079 * 61.01766 * 1 2 3 30 30 H 1.09004 * 109.47194 * 181.01038 * 1 2 3 31 31 H 1.08996 * 109.47365 * 301.01416 * 1 2 3 32 32 H 1.08995 * 110.46083 * 215.69565 * 3 2 1 33 33 H 1.08996 * 110.46302 * 338.14727 * 3 2 1 34 34 H 0.97003 * 119.99935 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.45762 * 76.90435 * 13 4 3 36 36 H 1.08996 * 110.46144 * 199.48169 * 13 4 3 37 37 H 1.09002 * 110.05818 * 348.70000 * 16 14 13 38 38 H 1.08995 * 110.06615 * 110.15571 * 16 14 13 39 39 H 1.09001 * 109.46803 * 59.99781 * 21 20 18 40 40 H 1.08995 * 109.47087 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47029 * 300.00182 * 21 20 18 42 42 H 1.09002 * 109.60317 * 292.49339 * 22 20 18 43 43 H 1.09002 * 109.59883 * 52.97815 * 22 20 18 44 44 H 1.09000 * 109.28351 * 290.41918 * 23 22 20 45 45 H 1.08999 * 109.14307 * 170.94195 * 23 22 20 46 46 H 0.97003 * 117.94733 * 160.94155 * 24 23 22 47 47 H 1.09002 * 109.39937 * 222.28131 * 27 25 24 48 48 H 1.09006 * 109.39629 * 102.55102 * 27 25 24 49 49 H 1.09004 * 110.06785 * 209.38560 * 28 17 16 50 50 H 1.09001 * 110.06750 * 87.86735 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4291 0.0000 4 7 2.4171 1.7023 1.4265 5 6 2.2026 2.8566 2.1312 6 1 1.5509 3.6198 1.7320 7 6 2.8229 3.0460 3.3585 8 7 3.7565 2.2096 3.7599 9 14 2.3326 4.4879 4.4402 10 1 1.3094 4.0452 5.4212 11 1 3.5271 4.9921 5.1642 12 1 1.7717 5.5724 3.5951 13 6 3.0052 0.4289 1.9091 14 6 2.1221 -0.6659 1.2712 15 1 1.3492 -1.0227 1.9520 16 6 3.0240 -1.7974 0.7515 17 7 2.6007 -2.0649 -0.6326 18 6 2.6422 -3.2501 -1.2728 19 8 2.1867 -3.3508 -2.3924 20 6 3.2544 -4.4503 -0.5976 21 6 4.6470 -4.0924 -0.0747 22 6 3.3595 -5.6077 -1.5980 23 6 4.1444 -6.7475 -0.9477 24 7 3.5931 -7.0633 0.3641 25 6 2.8133 -6.2397 1.0655 26 8 2.4456 -6.5951 2.1652 27 6 2.3657 -4.8959 0.5662 28 6 2.1239 -0.7849 -1.1811 29 1 -0.3633 0.4979 -0.8989 30 1 -0.3634 -1.0275 0.0181 31 1 -0.3634 0.5295 0.8807 32 1 3.0279 1.4669 -0.5958 33 1 1.3837 2.1413 -0.3801 34 1 4.1898 2.3418 4.6177 35 1 4.0365 0.3326 1.5692 36 1 2.9547 0.3737 2.9965 37 1 4.0673 -1.4820 0.7693 38 1 2.8933 -2.6904 1.3626 39 1 4.5668 -3.2756 0.6427 40 1 5.0865 -4.9623 0.4133 41 1 5.2795 -3.7840 -0.9071 42 1 2.3606 -5.9555 -1.8612 43 1 3.8798 -5.2701 -2.4944 44 1 5.1872 -6.4498 -0.8381 45 1 4.0867 -7.6301 -1.5847 46 1 3.8066 -7.9267 0.7511 47 1 2.4352 -4.1679 1.3744 48 1 1.3316 -4.9616 0.2277 49 1 1.3569 -0.9635 -1.9348 50 1 2.9557 -0.2318 -1.6172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091782960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:05 Heat of formation + Delta-G solvation = -33.922385 kcal Electronic energy + Delta-G solvation = -31127.141683 eV Core-core repulsion = 27155.050059 eV Total energy + Delta-G solvation = -3972.091625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.40204 -39.99214 -38.59098 -36.74938 -35.18754 -34.13935 -32.62389 -30.95331 -30.02645 -29.89652 -28.22477 -26.72597 -25.96265 -25.22151 -24.63575 -23.15965 -21.98857 -20.58239 -19.42333 -18.79117 -18.53907 -17.51120 -16.98346 -16.69426 -16.21490 -15.93859 -15.48145 -15.27146 -14.96024 -14.71781 -14.36158 -14.32316 -13.79537 -13.75811 -13.57179 -13.17105 -12.99855 -12.80482 -12.61941 -12.41313 -12.05118 -11.90315 -11.82913 -11.67504 -11.59154 -11.45356 -11.24799 -11.11359 -10.92711 -10.86843 -10.64519 -10.40443 -10.13057 -10.06145 -10.00884 -9.82391 -9.72134 -9.47254 -9.37930 -8.73009 -8.53849 -6.91709 -5.83798 -3.18224 2.39602 2.57236 2.98244 3.00560 3.35649 3.41705 3.43202 4.08835 4.22807 4.32032 4.42345 4.44391 4.66290 4.78056 4.80522 4.90463 5.01009 5.10269 5.17681 5.22911 5.32160 5.43969 5.46640 5.48480 5.53359 5.54484 5.61451 5.63402 5.74552 5.77294 5.88187 5.96126 6.03285 6.04850 6.11902 6.25492 6.32226 6.38990 6.47902 6.52074 6.63204 6.70676 6.84699 7.02214 7.23052 7.46147 7.63113 7.66377 7.95759 8.13964 8.15286 9.05669 9.69029 10.46317 11.29857 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.068481 B = 8820.045557 C = 9623.319933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.087 4.087 3 C 0.137 3.863 4 N -0.592 5.592 5 C -0.225 4.225 6 H 0.077 0.923 7 C -0.005 4.005 8 N -0.915 5.915 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.161 3.839 14 C -0.119 4.119 15 H 0.084 0.916 16 C 0.098 3.902 17 N -0.607 5.607 18 C 0.541 3.459 19 O -0.546 6.546 20 C -0.077 4.077 21 C -0.161 4.161 22 C -0.111 4.111 23 C 0.109 3.891 24 N -0.721 5.721 25 C 0.528 3.472 26 O -0.553 6.553 27 C -0.131 4.131 28 C 0.117 3.883 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.024 0.976 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.400 0.600 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.075 0.925 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 -16.435 -10.266 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C 0.010 3.990 4 N -0.315 5.315 5 C -0.353 4.353 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.562 5.562 9 Si 0.741 3.259 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.035 3.965 14 C -0.140 4.140 15 H 0.102 0.898 16 C -0.024 4.024 17 N -0.339 5.339 18 C 0.329 3.671 19 O -0.424 6.424 20 C -0.080 4.080 21 C -0.218 4.218 22 C -0.149 4.149 23 C -0.015 4.015 24 N -0.373 5.373 25 C 0.315 3.685 26 O -0.431 6.431 27 C -0.170 4.170 28 C -0.006 4.006 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.235 0.765 47 H 0.132 0.868 48 H 0.123 0.877 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.910 -16.342 -10.220 19.296 hybrid contribution 0.013 0.440 0.649 0.784 sum 0.923 -15.902 -9.572 18.583 Atomic orbital electron populations 1.21572 0.93429 1.00730 1.01943 1.22375 0.95702 0.97387 0.93465 1.21867 0.96660 0.91991 0.88517 1.45036 1.72293 1.10254 1.03899 1.19000 1.21823 0.94222 1.00241 0.90573 1.24861 0.97262 0.98830 0.99237 1.69866 1.26415 1.38387 1.21486 0.86118 0.77470 0.81688 0.80584 1.21539 1.21715 1.20539 1.21768 0.91955 0.82242 1.00517 1.23305 0.98398 0.95608 0.96658 0.89758 1.22646 0.99339 0.98978 0.81450 1.48596 1.62471 1.08109 1.14724 1.19881 0.78938 0.82648 0.85618 1.90687 1.47932 1.84240 1.19503 1.20825 0.97101 0.94097 0.95972 1.22235 0.93800 1.03292 1.02433 1.21739 1.02343 0.92911 0.97934 1.21468 0.97778 0.98857 0.83432 1.45476 1.51418 1.20250 1.20179 1.19938 0.77595 0.86434 0.84551 1.90788 1.56015 1.75720 1.20601 1.21897 1.01136 0.94961 0.99022 1.22197 0.98883 0.82988 0.96514 0.93063 0.93521 0.91661 0.95576 0.93194 0.93581 0.95831 0.89041 0.90455 0.90634 0.90212 0.91234 0.91365 0.90108 0.88828 0.90998 0.90140 0.76510 0.86752 0.87671 0.90689 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.61 37.16 0.32 -1.47 16 2 C -0.09 -1.40 1.08 -152.17 -0.16 -1.56 16 3 C 0.14 2.63 6.38 -2.27 -0.01 2.61 16 4 N -0.59 -14.05 3.37 -168.48 -0.57 -14.62 16 5 C -0.22 -5.95 10.38 -15.06 -0.16 -6.11 16 6 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 7 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 8 N -0.92 -25.62 10.85 55.49 0.60 -25.01 16 9 Si 0.91 21.33 29.56 -169.99 -5.03 16.30 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.16 3.49 5.51 -2.27 -0.01 3.48 16 14 C -0.12 -1.99 3.74 -88.29 -0.33 -2.32 16 15 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 16 C 0.10 1.35 4.54 -3.28 -0.01 1.33 16 17 N -0.61 -8.35 3.29 -171.66 -0.56 -8.92 16 18 C 0.54 7.24 6.59 -10.99 -0.07 7.17 16 19 O -0.55 -8.86 16.22 5.55 0.09 -8.77 16 20 C -0.08 -0.77 0.49 -155.44 -0.08 -0.85 16 21 C -0.16 -1.45 7.53 37.16 0.28 -1.17 16 22 C -0.11 -0.91 4.28 -26.60 -0.11 -1.02 16 23 C 0.11 0.63 6.38 -4.49 -0.03 0.60 16 24 N -0.72 -5.74 5.24 -61.40 -0.32 -6.06 16 25 C 0.53 6.01 7.15 -11.87 -0.08 5.93 16 26 O -0.55 -8.60 17.78 5.56 0.10 -8.50 16 27 C -0.13 -1.40 4.55 -28.10 -0.13 -1.52 16 28 C 0.12 1.72 6.24 -3.28 -0.02 1.70 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.51 7.17 -51.93 -0.37 0.13 16 33 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.02 0.53 7.17 -51.93 -0.37 0.16 16 36 H 0.09 2.27 6.40 -51.93 -0.33 1.93 16 37 H 0.08 1.07 6.33 -51.93 -0.33 0.75 16 38 H 0.08 0.91 4.18 -51.93 -0.22 0.70 16 39 H 0.08 0.79 4.46 -51.93 -0.23 0.56 16 40 H 0.07 0.56 5.90 -51.93 -0.31 0.25 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 44 H 0.07 0.35 6.87 -51.93 -0.36 -0.01 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.40 2.71 8.80 -40.82 -0.36 2.35 16 47 H 0.11 1.27 5.26 -51.93 -0.27 1.00 16 48 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 49 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 50 H 0.07 1.03 7.10 -51.93 -0.37 0.66 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -32.36 370.70 -8.47 -40.83 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.66 Total: 2.59 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.71 Total: 6.57 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.85 Total: -54.62 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.19 Total: -17.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.36 -8.47 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091782960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.909 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds