Wall clock time and date at job start Tue Mar 31 2020 19:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.54459 * 112.29928 * 2 1 4 4 N 1.48331 * 104.32384 * 96.98801 * 3 2 1 5 5 C 1.36933 * 128.19831 * 221.81332 * 4 3 2 6 6 H 1.08003 * 119.99821 * 15.14888 * 5 4 3 7 7 C 1.38811 * 120.00035 * 195.16006 * 5 4 3 8 8 N 1.31616 * 119.99818 * 9.46393 * 7 5 4 9 9 Si 1.86798 * 119.99929 * 189.46161 * 7 5 4 10 10 H 1.48505 * 109.47067 * 94.83830 * 9 7 5 11 11 H 1.48501 * 109.47313 * 214.83396 * 9 7 5 12 12 H 1.48498 * 109.47385 * 334.83440 * 9 7 5 13 13 C 1.48335 * 103.60427 * 41.80396 * 4 3 2 14 14 C 1.54445 * 104.32584 * 318.19703 * 13 4 3 15 15 H 1.09007 * 112.29883 * 263.00893 * 14 13 4 16 16 C 1.53745 * 109.01813 * 137.35735 * 14 13 4 17 17 N 1.47191 * 106.42988 * 229.45572 * 16 14 13 18 18 C 1.34772 * 126.70213 * 211.34231 * 17 16 14 19 19 O 1.21287 * 120.00034 * 175.60048 * 18 17 16 20 20 C 1.50704 * 120.00058 * 355.60555 * 18 17 16 21 21 C 1.53001 * 109.67118 * 308.56635 * 20 18 17 22 22 C 1.53352 * 109.67365 * 188.03241 * 20 18 17 23 23 C 1.52904 * 108.68463 * 172.74728 * 22 20 18 24 24 N 1.45751 * 110.49554 * 50.72449 * 23 22 20 25 25 C 1.33356 * 124.10909 * 340.96148 * 24 23 22 26 26 O 1.21281 * 118.24428 * 182.17715 * 25 24 23 27 27 C 1.50176 * 123.50356 * 2.19831 * 25 24 23 28 28 C 1.47190 * 106.59511 * 31.36937 * 17 16 14 29 29 H 1.08997 * 109.47079 * 61.01766 * 1 2 3 30 30 H 1.09004 * 109.47194 * 181.01038 * 1 2 3 31 31 H 1.08996 * 109.47365 * 301.01416 * 1 2 3 32 32 H 1.08995 * 110.46083 * 215.69565 * 3 2 1 33 33 H 1.08996 * 110.46302 * 338.14727 * 3 2 1 34 34 H 0.97003 * 119.99935 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.45762 * 76.90435 * 13 4 3 36 36 H 1.08996 * 110.46144 * 199.48169 * 13 4 3 37 37 H 1.09002 * 110.05818 * 348.70000 * 16 14 13 38 38 H 1.08995 * 110.06615 * 110.15571 * 16 14 13 39 39 H 1.09001 * 109.46803 * 59.99781 * 21 20 18 40 40 H 1.08995 * 109.47087 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47029 * 300.00182 * 21 20 18 42 42 H 1.09002 * 109.60317 * 292.49339 * 22 20 18 43 43 H 1.09002 * 109.59883 * 52.97815 * 22 20 18 44 44 H 1.09000 * 109.28351 * 290.41918 * 23 22 20 45 45 H 1.08999 * 109.14307 * 170.94195 * 23 22 20 46 46 H 0.97003 * 117.94733 * 160.94155 * 24 23 22 47 47 H 1.09002 * 109.39937 * 222.28131 * 27 25 24 48 48 H 1.09006 * 109.39629 * 102.55102 * 27 25 24 49 49 H 1.09004 * 110.06785 * 209.38560 * 28 17 16 50 50 H 1.09001 * 110.06750 * 87.86735 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4291 0.0000 4 7 2.4171 1.7023 1.4265 5 6 2.2026 2.8566 2.1312 6 1 1.5509 3.6198 1.7320 7 6 2.8229 3.0460 3.3585 8 7 3.7565 2.2096 3.7599 9 14 2.3326 4.4879 4.4402 10 1 1.3094 4.0452 5.4212 11 1 3.5271 4.9921 5.1642 12 1 1.7717 5.5724 3.5951 13 6 3.0052 0.4289 1.9091 14 6 2.1221 -0.6659 1.2712 15 1 1.3492 -1.0227 1.9520 16 6 3.0240 -1.7974 0.7515 17 7 2.6007 -2.0649 -0.6326 18 6 2.6422 -3.2501 -1.2728 19 8 2.1867 -3.3508 -2.3924 20 6 3.2544 -4.4503 -0.5976 21 6 4.6470 -4.0924 -0.0747 22 6 3.3595 -5.6077 -1.5980 23 6 4.1444 -6.7475 -0.9477 24 7 3.5931 -7.0633 0.3641 25 6 2.8133 -6.2397 1.0655 26 8 2.4456 -6.5951 2.1652 27 6 2.3657 -4.8959 0.5662 28 6 2.1239 -0.7849 -1.1811 29 1 -0.3633 0.4979 -0.8989 30 1 -0.3634 -1.0275 0.0181 31 1 -0.3634 0.5295 0.8807 32 1 3.0279 1.4669 -0.5958 33 1 1.3837 2.1413 -0.3801 34 1 4.1898 2.3418 4.6177 35 1 4.0365 0.3326 1.5692 36 1 2.9547 0.3737 2.9965 37 1 4.0673 -1.4820 0.7693 38 1 2.8933 -2.6904 1.3626 39 1 4.5668 -3.2756 0.6427 40 1 5.0865 -4.9623 0.4133 41 1 5.2795 -3.7840 -0.9071 42 1 2.3606 -5.9555 -1.8612 43 1 3.8798 -5.2701 -2.4944 44 1 5.1872 -6.4498 -0.8381 45 1 4.0867 -7.6301 -1.5847 46 1 3.8066 -7.9267 0.7511 47 1 2.4352 -4.1679 1.3744 48 1 1.3316 -4.9616 0.2277 49 1 1.3569 -0.9635 -1.9348 50 1 2.9557 -0.2318 -1.6172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091782960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:04 Heat of formation + Delta-G solvation = -56.017654 kcal Electronic energy + Delta-G solvation = -31128.099806 eV Core-core repulsion = 27155.050059 eV Total energy + Delta-G solvation = -3973.049747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.36243 -41.12267 -39.80220 -37.67247 -36.64490 -35.12523 -34.15364 -32.48916 -31.49976 -30.76275 -29.01668 -28.01479 -27.52608 -26.66811 -25.55132 -24.28156 -23.17949 -22.21891 -20.51897 -19.98107 -19.46096 -18.64702 -18.37290 -17.87008 -17.09940 -16.92224 -16.86372 -16.43495 -16.21635 -15.83484 -15.71566 -15.39453 -15.20500 -15.10083 -14.60200 -14.36444 -14.12080 -13.95572 -13.68091 -13.60916 -13.21159 -13.13957 -13.06052 -12.88592 -12.75674 -12.71131 -12.56890 -12.47291 -12.22290 -12.02690 -11.97881 -11.77435 -11.76226 -11.48765 -11.39144 -11.34653 -11.26289 -10.70249 -10.55528 -10.06529 -9.72221 -8.84581 -7.87423 -5.22327 1.45926 1.48526 1.49441 1.57166 1.57925 1.90498 2.30188 2.50727 3.16780 3.32599 3.39808 3.46196 3.53632 3.63312 3.69657 3.88435 3.95143 4.02112 4.10526 4.14530 4.22289 4.29086 4.39367 4.47301 4.54252 4.59335 4.66523 4.68839 4.74821 4.79544 4.84257 4.90946 4.94238 4.96187 4.99945 5.04725 5.12332 5.14411 5.24461 5.26551 5.34041 5.42788 5.48408 5.59479 5.73716 5.83677 6.22783 6.27411 6.51481 7.04789 7.05330 7.16869 7.72292 8.51682 9.25217 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.068481 B = 8820.045557 C = 9623.319933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C 0.135 3.865 4 N -0.617 5.617 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.059 4.059 8 N -0.943 5.943 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.269 1.269 13 C 0.169 3.831 14 C -0.111 4.111 15 H 0.084 0.916 16 C 0.110 3.890 17 N -0.606 5.606 18 C 0.542 3.458 19 O -0.571 6.571 20 C -0.069 4.069 21 C -0.158 4.158 22 C -0.110 4.110 23 C 0.110 3.890 24 N -0.707 5.707 25 C 0.528 3.472 26 O -0.602 6.602 27 C -0.128 4.128 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.248 0.752 35 H 0.011 0.989 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.408 0.592 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -17.974 -11.837 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C 0.010 3.990 4 N -0.340 5.340 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.253 4.253 8 N -0.591 5.591 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.194 1.194 13 C 0.043 3.957 14 C -0.132 4.132 15 H 0.102 0.898 16 C -0.012 4.012 17 N -0.338 5.338 18 C 0.332 3.668 19 O -0.451 6.451 20 C -0.072 4.072 21 C -0.215 4.215 22 C -0.148 4.148 23 C -0.013 4.013 24 N -0.358 5.358 25 C 0.316 3.684 26 O -0.484 6.484 27 C -0.168 4.168 28 C -0.001 4.001 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.245 0.755 47 H 0.126 0.874 48 H 0.121 0.879 49 H 0.098 0.902 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.109 -17.906 -11.855 21.503 hybrid contribution -0.036 0.924 1.028 1.383 sum 1.074 -16.982 -10.827 20.168 Atomic orbital electron populations 1.21518 0.92241 1.01444 1.01877 1.22251 0.96512 0.95449 0.93708 1.22011 0.96901 0.93972 0.86163 1.45305 1.72489 1.10278 1.05969 1.19318 1.21203 0.95083 1.00611 0.90490 1.25587 0.97722 1.01379 1.00567 1.70042 1.27615 1.39961 1.21500 0.85159 0.76699 0.79245 0.78819 1.21591 1.22253 1.19408 1.21582 0.92248 0.83328 0.98581 1.23113 0.98023 0.95247 0.96769 0.89812 1.22489 0.98449 0.98587 0.81693 1.48586 1.62506 1.08161 1.14523 1.20433 0.78167 0.82935 0.85269 1.90678 1.49037 1.84614 1.20774 1.20829 0.97135 0.93269 0.95974 1.22233 0.93196 1.03558 1.02544 1.21763 1.02519 0.92783 0.97739 1.21682 0.97962 0.99301 0.82350 1.45447 1.49822 1.19938 1.20554 1.19961 0.77699 0.86712 0.84044 1.90771 1.58210 1.76705 1.22742 1.21830 1.01248 0.94756 0.98933 1.22064 0.98990 0.83333 0.95721 0.91424 0.92309 0.93504 0.95420 0.92891 0.94235 0.97139 0.92650 0.90396 0.88686 0.91266 0.89835 0.90511 0.90884 0.88306 0.89039 0.87075 0.75513 0.87436 0.87873 0.90204 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.24 8.61 71.98 0.62 -2.62 16 2 C -0.08 -2.41 1.08 -50.67 -0.05 -2.46 16 3 C 0.14 5.18 6.38 86.52 0.55 5.73 16 4 N -0.62 -29.84 3.37 -686.94 -2.32 -32.15 16 5 C -0.23 -12.56 10.38 84.03 0.87 -11.69 16 6 H 0.08 4.02 7.85 -2.91 -0.02 3.99 16 7 C -0.06 -3.22 5.40 84.86 0.46 -2.76 16 8 N -0.94 -54.44 10.85 21.65 0.23 -54.20 16 9 Si 0.97 44.56 29.56 68.60 2.03 46.59 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 C 0.17 7.51 5.51 86.52 0.48 7.99 16 14 C -0.11 -3.70 3.74 -9.28 -0.03 -3.74 16 15 H 0.08 2.83 7.93 -2.38 -0.02 2.81 16 16 C 0.11 2.91 4.54 86.50 0.39 3.31 16 17 N -0.61 -15.71 3.29 -815.39 -2.68 -18.39 16 18 C 0.54 13.46 6.59 87.66 0.58 14.04 16 19 O -0.57 -17.45 16.22 -3.05 -0.05 -17.50 16 20 C -0.07 -1.23 0.49 -52.79 -0.03 -1.26 16 21 C -0.16 -2.46 7.53 71.98 0.54 -1.91 16 22 C -0.11 -1.47 4.28 30.68 0.13 -1.34 16 23 C 0.11 0.85 6.38 86.49 0.55 1.40 16 24 N -0.71 -9.31 5.24 -467.35 -2.45 -11.76 16 25 C 0.53 11.24 7.15 87.71 0.63 11.86 16 26 O -0.60 -18.43 17.78 -3.03 -0.05 -18.49 16 27 C -0.13 -2.55 4.55 29.70 0.14 -2.41 16 28 C 0.12 3.39 6.24 86.50 0.54 3.93 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.06 7.17 -2.39 -0.02 1.05 16 33 H 0.05 1.96 7.92 -2.39 -0.02 1.95 16 34 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.01 0.50 7.17 -2.38 -0.02 0.48 16 36 H 0.06 2.86 6.40 -2.39 -0.02 2.85 16 37 H 0.08 2.11 6.33 -2.39 -0.02 2.09 16 38 H 0.10 2.19 4.18 -2.39 -0.01 2.18 16 39 H 0.07 1.24 4.46 -2.39 -0.01 1.23 16 40 H 0.08 1.08 5.90 -2.39 -0.01 1.06 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.12 8.12 -2.39 -0.02 1.11 16 43 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 44 H 0.09 0.47 6.87 -2.39 -0.02 0.45 16 45 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.41 4.41 8.80 -92.71 -0.82 3.60 16 47 H 0.11 2.28 5.26 -2.39 -0.01 2.27 16 48 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 49 H 0.08 2.19 7.59 -2.38 -0.02 2.17 16 50 H 0.07 1.97 7.10 -2.39 -0.02 1.96 16 Total: -1.00 -71.65 370.70 1.23 -70.42 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.16 Total: 17.42 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.36 Total: 18.07 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.21 Total: -116.51 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -35.99 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.65 1.23 -70.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091782960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds