Wall clock time and date at job start Tue Mar 31 2020 19:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54067 * 112.58004 * 2 1 4 4 N 1.48331 * 104.51410 * 97.43486 * 3 2 1 5 5 C 1.36941 * 128.19708 * 221.79170 * 4 3 2 6 6 H 1.08007 * 119.99816 * 163.63799 * 5 4 3 7 7 C 1.38803 * 120.00027 * 343.64123 * 5 4 3 8 8 N 1.31623 * 120.00223 * 350.84801 * 7 5 4 9 9 Si 1.86804 * 120.00025 * 170.85434 * 7 5 4 10 10 H 1.48503 * 109.46905 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47387 * 119.99977 * 9 7 5 12 12 H 1.48497 * 109.47103 * 240.00025 * 9 7 5 13 13 C 1.48339 * 103.60471 * 41.53835 * 4 3 2 14 14 C 1.54455 * 104.31851 * 318.42713 * 13 4 3 15 15 H 1.08993 * 112.30091 * 262.44566 * 14 13 4 16 16 C 1.53744 * 109.00638 * 137.36266 * 14 13 4 17 17 N 1.47206 * 106.42757 * 229.45687 * 16 14 13 18 18 C 1.34777 * 126.70024 * 211.40519 * 17 16 14 19 19 O 1.21283 * 119.99322 * 184.29675 * 18 17 16 20 20 C 1.50695 * 120.00281 * 4.30064 * 18 17 16 21 21 C 1.52999 * 109.60345 * 303.54981 * 20 18 17 22 22 C 1.53352 * 109.60048 * 64.04197 * 20 18 17 23 23 C 1.53056 * 108.43990 * 52.23979 * 22 20 18 24 24 C 1.50176 * 109.89331 * 48.88378 * 23 22 20 25 25 O 1.21284 * 118.24442 * 162.43588 * 24 23 22 26 26 N 1.33350 * 123.50972 * 342.41826 * 24 23 22 27 27 C 1.45759 * 124.10778 * 2.24556 * 26 24 23 28 28 C 1.47192 * 106.58849 * 31.36800 * 17 16 14 29 29 H 1.08997 * 109.47223 * 302.10886 * 1 2 3 30 30 H 1.09005 * 109.46706 * 62.11480 * 1 2 3 31 31 H 1.09000 * 109.46983 * 182.11033 * 1 2 3 32 32 H 1.09002 * 110.39803 * 338.64956 * 3 2 1 33 33 H 1.08999 * 110.34004 * 216.19552 * 3 2 1 34 34 H 0.97000 * 119.99953 * 180.02562 * 8 7 5 35 35 H 1.08997 * 110.46427 * 77.13918 * 13 4 3 36 36 H 1.09000 * 110.45730 * 199.59614 * 13 4 3 37 37 H 1.08999 * 110.07077 * 348.69854 * 16 14 13 38 38 H 1.08998 * 110.06929 * 110.16428 * 16 14 13 39 39 H 1.09004 * 109.46642 * 65.72780 * 21 20 18 40 40 H 1.08997 * 109.46816 * 185.72438 * 21 20 18 41 41 H 1.08994 * 109.46760 * 305.73056 * 21 20 18 42 42 H 1.08999 * 109.67062 * 171.96111 * 22 20 18 43 43 H 1.09000 * 109.67214 * 292.48689 * 22 20 18 44 44 H 1.09001 * 109.39706 * 288.75319 * 23 22 20 45 45 H 1.08993 * 109.32961 * 168.97606 * 23 22 20 46 46 H 0.97000 * 117.94789 * 182.21871 * 26 24 23 47 47 H 1.08994 * 109.29902 * 220.59268 * 27 26 24 48 48 H 1.09001 * 109.30000 * 101.21304 * 27 26 24 49 49 H 1.09000 * 110.06315 * 87.87992 * 28 17 16 50 50 H 1.09004 * 110.06211 * 209.33180 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4226 0.0000 4 7 2.4359 1.6945 1.4239 5 6 2.2329 2.8500 2.1302 6 1 2.2596 2.8347 3.2098 7 6 1.9927 4.0408 1.4586 8 7 2.1371 4.1000 0.1517 9 14 1.4647 5.5594 2.4097 10 1 1.3754 5.2318 3.8554 11 1 2.4613 6.6415 2.2074 12 1 0.1370 6.0119 1.9223 13 6 3.0163 0.4163 1.9033 14 6 2.1221 -0.6713 1.2684 15 1 1.3555 -1.0295 1.9555 16 6 3.0133 -1.8093 0.7445 17 7 2.5823 -2.0727 -0.6382 18 6 2.6111 -3.2581 -1.2788 19 8 2.2977 -3.3227 -2.4487 20 6 3.0327 -4.5030 -0.5417 21 6 4.4267 -4.2991 0.0549 22 6 2.0288 -4.8025 0.5782 23 6 0.6219 -4.8183 -0.0243 24 6 0.6030 -5.6774 -1.2559 25 8 -0.4696 -6.0628 -1.6705 26 7 1.7025 -6.0388 -1.9183 27 6 3.0564 -5.6881 -1.5079 28 6 2.1130 -0.7887 -1.1839 29 1 -0.3633 0.5462 0.8704 30 1 -0.3633 0.4807 -0.9084 31 1 -0.3633 -1.0270 0.0378 32 1 1.3888 2.1387 -0.3720 33 1 3.0286 1.4557 -0.6035 34 1 1.9696 4.9323 -0.3176 35 1 4.0453 0.3123 1.5593 36 1 2.9717 0.3619 2.9911 37 1 4.0590 -1.5020 0.7582 38 1 2.8781 -2.7017 1.3556 39 1 4.3842 -3.5254 0.8215 40 1 4.7717 -5.2326 0.4995 41 1 5.1172 -3.9940 -0.7313 42 1 2.2499 -5.7747 1.0188 43 1 2.0916 -4.0293 1.3438 44 1 0.3292 -3.8018 -0.2873 45 1 -0.0795 -5.2190 0.7075 46 1 1.5945 -6.5686 -2.7237 47 1 3.6425 -5.4237 -2.3879 48 1 3.5170 -6.5448 -1.0160 49 1 2.9473 -0.2418 -1.6231 50 1 1.3424 -0.9611 -1.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091942670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:12 Heat of formation + Delta-G solvation = -34.832479 kcal Electronic energy + Delta-G solvation = -31537.096447 eV Core-core repulsion = 27564.965358 eV Total energy + Delta-G solvation = -3972.131089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45383 -39.83160 -38.50790 -36.49907 -35.22101 -33.75346 -32.41915 -31.69922 -31.29332 -29.64003 -26.86037 -26.50816 -25.91223 -25.23545 -24.52956 -23.41563 -21.93365 -20.71754 -20.42105 -18.73369 -18.04107 -17.36811 -16.87705 -16.66357 -16.15150 -15.94532 -15.62483 -15.18830 -14.75067 -14.47936 -14.27582 -14.06635 -13.93701 -13.60595 -13.53832 -13.08157 -13.01339 -12.93376 -12.71985 -12.59221 -12.26910 -12.07080 -11.83054 -11.72840 -11.60807 -11.51223 -11.20981 -11.09539 -10.94824 -10.83249 -10.72079 -10.20025 -10.07379 -10.02589 -9.93685 -9.81941 -9.68207 -9.58161 -9.17910 -8.74368 -8.53516 -6.92370 -5.85224 -3.20495 2.57982 2.59110 2.97891 3.18050 3.33816 3.40281 3.42427 4.03103 4.14559 4.32376 4.40333 4.42849 4.59196 4.78009 4.95108 4.95300 5.02460 5.08027 5.19471 5.23996 5.28164 5.33491 5.42029 5.45773 5.49697 5.51516 5.59494 5.62085 5.68902 5.73976 5.83765 5.87861 6.00384 6.05959 6.15855 6.21896 6.27192 6.42471 6.58650 6.64318 6.65890 6.71067 6.87200 7.20825 7.21587 7.47102 7.63473 7.66241 8.12487 8.13828 8.15981 9.03842 9.67538 10.44856 11.28544 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.003099 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.827397 B = 9033.897810 C = 9301.308304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C 0.168 3.832 4 N -0.592 5.592 5 C -0.227 4.227 6 H 0.076 0.924 7 C -0.003 4.003 8 N -0.913 5.913 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.131 3.869 14 C -0.110 4.110 15 H 0.085 0.915 16 C 0.097 3.903 17 N -0.608 5.608 18 C 0.536 3.464 19 O -0.538 6.538 20 C -0.095 4.095 21 C -0.149 4.149 22 C -0.117 4.117 23 C -0.140 4.140 24 C 0.526 3.474 25 O -0.563 6.563 26 N -0.708 5.708 27 C 0.136 3.864 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.024 0.976 34 H 0.254 0.746 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.400 0.600 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 -19.244 1.618 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C 0.042 3.958 4 N -0.315 5.315 5 C -0.355 4.355 6 H 0.094 0.906 7 C -0.201 4.201 8 N -0.559 5.559 9 Si 0.740 3.260 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.216 1.216 13 C 0.004 3.996 14 C -0.131 4.131 15 H 0.103 0.897 16 C -0.026 4.026 17 N -0.340 5.340 18 C 0.323 3.677 19 O -0.415 6.415 20 C -0.099 4.099 21 C -0.207 4.207 22 C -0.154 4.154 23 C -0.180 4.180 24 C 0.313 3.687 25 O -0.442 6.442 26 N -0.359 5.359 27 C 0.011 3.989 28 C -0.005 4.005 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.235 0.765 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.865 -19.127 0.924 19.536 hybrid contribution -0.067 0.787 0.082 0.794 sum 3.797 -18.340 1.006 18.756 Atomic orbital electron populations 1.21554 0.93570 1.00059 1.02293 1.22471 0.95799 0.99001 0.92299 1.21670 0.97819 0.89832 0.86526 1.45034 1.69923 1.08737 1.07807 1.19005 1.42636 0.83917 0.89970 0.90581 1.24887 1.01875 0.97364 0.95938 1.69891 1.53459 1.26052 1.06489 0.86088 0.78012 0.82911 0.78970 1.20371 1.21713 1.21610 1.21853 0.93851 0.86804 0.97060 1.23119 0.97865 0.94838 0.97302 0.89685 1.22643 0.99000 0.98781 0.82162 1.48572 1.62775 1.07982 1.14674 1.19885 0.77896 0.83169 0.86703 1.90729 1.49218 1.85576 1.15939 1.21140 0.98496 0.93515 0.96712 1.22022 0.93128 1.03633 1.01927 1.21912 0.92592 1.03938 0.96956 1.21682 0.98866 1.01612 0.95844 1.20009 0.83434 0.79945 0.85320 1.90745 1.29000 1.55847 1.68610 1.45209 1.05916 1.55369 1.29398 1.21206 0.83758 0.95298 0.98612 1.22248 0.99106 0.82496 0.96681 0.91787 0.92838 0.94061 0.89148 0.95844 0.93581 0.95602 0.93285 0.90839 0.90341 0.90192 0.90962 0.91490 0.89761 0.89030 0.88128 0.87677 0.76468 0.89767 0.90804 0.91101 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.60 37.16 0.32 -1.61 16 2 C -0.09 -1.57 1.07 -152.38 -0.16 -1.74 16 3 C 0.17 3.68 5.11 -2.48 -0.01 3.66 16 4 N -0.59 -13.83 3.37 -168.71 -0.57 -14.40 16 5 C -0.23 -5.94 10.37 -15.06 -0.16 -6.10 16 6 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 7 C 0.00 -0.09 5.40 -17.43 -0.09 -0.18 16 8 N -0.91 -25.68 10.90 55.49 0.60 -25.07 16 9 Si 0.91 21.17 29.56 -169.99 -5.03 16.14 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.36 6.76 -2.27 -0.02 2.35 16 14 C -0.11 -1.62 3.73 -88.28 -0.33 -1.95 16 15 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 16 C 0.10 1.12 4.59 -3.27 -0.02 1.10 16 17 N -0.61 -8.10 3.31 -171.65 -0.57 -8.67 16 18 C 0.54 7.07 4.90 -10.99 -0.05 7.01 16 19 O -0.54 -9.11 15.57 5.55 0.09 -9.02 16 20 C -0.10 -0.84 0.50 -155.52 -0.08 -0.92 16 21 C -0.15 -0.98 8.12 37.16 0.30 -0.68 16 22 C -0.12 -0.91 4.75 -26.52 -0.13 -1.04 16 23 C -0.14 -1.51 5.50 -28.11 -0.15 -1.67 16 24 C 0.53 7.06 7.29 -11.87 -0.09 6.98 16 25 O -0.56 -9.87 17.78 5.55 0.10 -9.78 16 26 N -0.71 -7.66 4.93 -61.39 -0.30 -7.96 16 27 C 0.14 1.13 5.40 -4.48 -0.02 1.10 16 28 C 0.12 1.86 6.19 -3.28 -0.02 1.84 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.28 6.26 -51.93 -0.32 1.96 16 33 H 0.02 0.55 7.16 -51.93 -0.37 0.18 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.03 0.46 7.17 -51.93 -0.37 0.09 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.84 6.78 -51.93 -0.35 0.48 16 38 H 0.08 0.68 3.75 -51.93 -0.19 0.49 16 39 H 0.08 0.52 4.80 -51.93 -0.25 0.27 16 40 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 43 H 0.09 0.65 5.26 -51.93 -0.27 0.38 16 44 H 0.10 1.28 7.43 -51.93 -0.39 0.89 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.40 4.02 8.80 -40.82 -0.36 3.66 16 47 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 48 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 49 H 0.07 1.19 7.10 -51.93 -0.37 0.82 16 50 H 0.07 1.22 7.66 -51.93 -0.40 0.82 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -33.51 372.36 -8.59 -42.10 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.82 Total: 2.88 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.71 Total: 8.17 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.84 Total: -56.10 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.19 Total: -18.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.51 -8.59 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091942670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.264 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds