Wall clock time and date at job start Tue Mar 31 2020 19:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54067 * 112.58004 * 2 1 4 4 N 1.48331 * 104.51410 * 97.43486 * 3 2 1 5 5 C 1.36941 * 128.19708 * 221.79170 * 4 3 2 6 6 H 1.08007 * 119.99816 * 163.63799 * 5 4 3 7 7 C 1.38803 * 120.00027 * 343.64123 * 5 4 3 8 8 N 1.31623 * 120.00223 * 350.84801 * 7 5 4 9 9 Si 1.86804 * 120.00025 * 170.85434 * 7 5 4 10 10 H 1.48503 * 109.46905 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47387 * 119.99977 * 9 7 5 12 12 H 1.48497 * 109.47103 * 240.00025 * 9 7 5 13 13 C 1.48339 * 103.60471 * 41.53835 * 4 3 2 14 14 C 1.54455 * 104.31851 * 318.42713 * 13 4 3 15 15 H 1.08993 * 112.30091 * 262.44566 * 14 13 4 16 16 C 1.53744 * 109.00638 * 137.36266 * 14 13 4 17 17 N 1.47206 * 106.42757 * 229.45687 * 16 14 13 18 18 C 1.34777 * 126.70024 * 211.40519 * 17 16 14 19 19 O 1.21283 * 119.99322 * 184.29675 * 18 17 16 20 20 C 1.50695 * 120.00281 * 4.30064 * 18 17 16 21 21 C 1.52999 * 109.60345 * 303.54981 * 20 18 17 22 22 C 1.53352 * 109.60048 * 64.04197 * 20 18 17 23 23 C 1.53056 * 108.43990 * 52.23979 * 22 20 18 24 24 C 1.50176 * 109.89331 * 48.88378 * 23 22 20 25 25 O 1.21284 * 118.24442 * 162.43588 * 24 23 22 26 26 N 1.33350 * 123.50972 * 342.41826 * 24 23 22 27 27 C 1.45759 * 124.10778 * 2.24556 * 26 24 23 28 28 C 1.47192 * 106.58849 * 31.36800 * 17 16 14 29 29 H 1.08997 * 109.47223 * 302.10886 * 1 2 3 30 30 H 1.09005 * 109.46706 * 62.11480 * 1 2 3 31 31 H 1.09000 * 109.46983 * 182.11033 * 1 2 3 32 32 H 1.09002 * 110.39803 * 338.64956 * 3 2 1 33 33 H 1.08999 * 110.34004 * 216.19552 * 3 2 1 34 34 H 0.97000 * 119.99953 * 180.02562 * 8 7 5 35 35 H 1.08997 * 110.46427 * 77.13918 * 13 4 3 36 36 H 1.09000 * 110.45730 * 199.59614 * 13 4 3 37 37 H 1.08999 * 110.07077 * 348.69854 * 16 14 13 38 38 H 1.08998 * 110.06929 * 110.16428 * 16 14 13 39 39 H 1.09004 * 109.46642 * 65.72780 * 21 20 18 40 40 H 1.08997 * 109.46816 * 185.72438 * 21 20 18 41 41 H 1.08994 * 109.46760 * 305.73056 * 21 20 18 42 42 H 1.08999 * 109.67062 * 171.96111 * 22 20 18 43 43 H 1.09000 * 109.67214 * 292.48689 * 22 20 18 44 44 H 1.09001 * 109.39706 * 288.75319 * 23 22 20 45 45 H 1.08993 * 109.32961 * 168.97606 * 23 22 20 46 46 H 0.97000 * 117.94789 * 182.21871 * 26 24 23 47 47 H 1.08994 * 109.29902 * 220.59268 * 27 26 24 48 48 H 1.09001 * 109.30000 * 101.21304 * 27 26 24 49 49 H 1.09000 * 110.06315 * 87.87992 * 28 17 16 50 50 H 1.09004 * 110.06211 * 209.33180 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4226 0.0000 4 7 2.4359 1.6945 1.4239 5 6 2.2329 2.8500 2.1302 6 1 2.2596 2.8347 3.2098 7 6 1.9927 4.0408 1.4586 8 7 2.1371 4.1000 0.1517 9 14 1.4647 5.5594 2.4097 10 1 1.3754 5.2318 3.8554 11 1 2.4613 6.6415 2.2074 12 1 0.1370 6.0119 1.9223 13 6 3.0163 0.4163 1.9033 14 6 2.1221 -0.6713 1.2684 15 1 1.3555 -1.0295 1.9555 16 6 3.0133 -1.8093 0.7445 17 7 2.5823 -2.0727 -0.6382 18 6 2.6111 -3.2581 -1.2788 19 8 2.2977 -3.3227 -2.4487 20 6 3.0327 -4.5030 -0.5417 21 6 4.4267 -4.2991 0.0549 22 6 2.0288 -4.8025 0.5782 23 6 0.6219 -4.8183 -0.0243 24 6 0.6030 -5.6774 -1.2559 25 8 -0.4696 -6.0628 -1.6705 26 7 1.7025 -6.0388 -1.9183 27 6 3.0564 -5.6881 -1.5079 28 6 2.1130 -0.7887 -1.1839 29 1 -0.3633 0.5462 0.8704 30 1 -0.3633 0.4807 -0.9084 31 1 -0.3633 -1.0270 0.0378 32 1 1.3888 2.1387 -0.3720 33 1 3.0286 1.4557 -0.6035 34 1 1.9696 4.9323 -0.3176 35 1 4.0453 0.3123 1.5593 36 1 2.9717 0.3619 2.9911 37 1 4.0590 -1.5020 0.7582 38 1 2.8781 -2.7017 1.3556 39 1 4.3842 -3.5254 0.8215 40 1 4.7717 -5.2326 0.4995 41 1 5.1172 -3.9940 -0.7313 42 1 2.2499 -5.7747 1.0188 43 1 2.0916 -4.0293 1.3438 44 1 0.3292 -3.8018 -0.2873 45 1 -0.0795 -5.2190 0.7075 46 1 1.5945 -6.5686 -2.7237 47 1 3.6425 -5.4237 -2.3879 48 1 3.5170 -6.5448 -1.0160 49 1 2.9473 -0.2418 -1.6231 50 1 1.3424 -0.9611 -1.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091942670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:11 Heat of formation + Delta-G solvation = -58.944882 kcal Electronic energy + Delta-G solvation = -31538.142040 eV Core-core repulsion = 27564.965358 eV Total energy + Delta-G solvation = -3973.176681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.40181 -41.00993 -39.70070 -37.46720 -36.64927 -34.82854 -33.92407 -32.90332 -32.30103 -31.15491 -28.16516 -27.56543 -27.28290 -26.54765 -25.26964 -24.68201 -23.04883 -22.15321 -21.49022 -20.00857 -19.25451 -18.56513 -18.25216 -17.70258 -17.09800 -16.93426 -16.70623 -16.55790 -16.21677 -15.82241 -15.41776 -15.22294 -15.08392 -14.93921 -14.43125 -14.23616 -14.20036 -13.99316 -13.69303 -13.45218 -13.37656 -13.26795 -13.06931 -13.04254 -12.92931 -12.75148 -12.53474 -12.35912 -12.34082 -12.06434 -11.85670 -11.75395 -11.68822 -11.49039 -11.43420 -11.24710 -10.82206 -10.69975 -10.67321 -10.04465 -9.68105 -8.83134 -7.87301 -5.22631 1.47498 1.49045 1.58530 1.58714 1.60701 1.94531 2.37082 2.51010 3.24541 3.33245 3.41143 3.50984 3.56819 3.63901 3.71269 3.90260 3.96604 4.02576 4.18291 4.27733 4.33931 4.36247 4.37216 4.53672 4.57974 4.63695 4.70351 4.70901 4.74702 4.83544 4.87777 4.94131 4.94989 4.96401 5.02889 5.06977 5.16058 5.21226 5.25084 5.31060 5.38091 5.48965 5.50168 5.57080 5.74672 5.80433 6.23010 6.33774 6.59707 7.04701 7.11579 7.18859 7.73820 8.53044 9.26080 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.003099 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.827397 B = 9033.897810 C = 9301.308304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C 0.176 3.824 4 N -0.618 5.618 5 C -0.229 4.229 6 H 0.084 0.916 7 C -0.063 4.063 8 N -0.947 5.947 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.296 1.296 13 C 0.128 3.872 14 C -0.098 4.098 15 H 0.105 0.895 16 C 0.103 3.897 17 N -0.606 5.606 18 C 0.531 3.469 19 O -0.583 6.583 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.109 4.109 23 C -0.140 4.140 24 C 0.515 3.485 25 O -0.618 6.618 26 N -0.703 5.703 27 C 0.130 3.870 28 C 0.124 3.876 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.048 0.952 33 H -0.002 1.002 34 H 0.246 0.754 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.400 0.600 47 H 0.079 0.921 48 H 0.118 0.882 49 H 0.054 0.946 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -22.225 4.572 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C 0.050 3.950 4 N -0.341 5.341 5 C -0.358 4.358 6 H 0.102 0.898 7 C -0.256 4.256 8 N -0.596 5.596 9 Si 0.800 3.200 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.224 1.224 13 C 0.003 3.997 14 C -0.119 4.119 15 H 0.123 0.877 16 C -0.018 4.018 17 N -0.337 5.337 18 C 0.321 3.679 19 O -0.462 6.462 20 C -0.092 4.092 21 C -0.204 4.204 22 C -0.146 4.146 23 C -0.179 4.179 24 C 0.304 3.696 25 O -0.502 6.502 26 N -0.352 5.352 27 C 0.006 3.994 28 C 0.001 3.999 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.235 0.765 47 H 0.097 0.903 48 H 0.136 0.864 49 H 0.073 0.927 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.441 -22.145 3.924 23.139 hybrid contribution -0.480 1.693 -0.908 1.981 sum 4.961 -20.452 3.016 21.260 Atomic orbital electron populations 1.21473 0.93155 1.01040 1.01111 1.22235 0.95966 0.96133 0.94400 1.21408 0.95815 0.91903 0.85890 1.45318 1.70821 1.09826 1.08179 1.19394 1.40811 0.84964 0.90596 0.89847 1.25641 1.03083 1.00198 0.96696 1.70090 1.55458 1.26073 1.07970 0.85121 0.76786 0.79501 0.78598 1.18600 1.22312 1.22368 1.22083 0.94410 0.85085 0.98133 1.23045 0.98038 0.94750 0.96032 0.87709 1.22742 0.98473 0.99276 0.81322 1.48576 1.62689 1.07132 1.15318 1.20859 0.76580 0.84052 0.86432 1.90716 1.51044 1.86238 1.18253 1.21231 1.00394 0.90767 0.96801 1.22067 0.90889 1.05710 1.01723 1.21997 0.89771 1.06474 0.96349 1.21694 1.01567 0.99601 0.95063 1.20570 0.83142 0.79814 0.86109 1.90712 1.31042 1.58141 1.70276 1.45317 1.06642 1.54263 1.28933 1.21534 0.82193 0.96730 0.98918 1.21906 0.98105 0.83983 0.95942 0.93207 0.93905 0.91767 0.93309 0.98364 0.94486 0.95003 0.91874 0.89964 0.86027 0.89714 0.87424 0.92260 0.86229 0.87451 0.90339 0.86327 0.76455 0.90287 0.86386 0.92747 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.65 8.60 71.98 0.62 -3.03 16 2 C -0.08 -2.87 1.07 -50.80 -0.05 -2.93 16 3 C 0.18 8.06 5.11 86.39 0.44 8.51 16 4 N -0.62 -29.06 3.37 -687.66 -2.32 -31.38 16 5 C -0.23 -12.03 10.37 84.03 0.87 -11.15 16 6 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 7 C -0.06 -3.43 5.40 84.86 0.46 -2.97 16 8 N -0.95 -55.80 10.90 21.65 0.24 -55.56 16 9 Si 0.97 44.35 29.56 68.60 2.03 46.37 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 13 C 0.13 4.36 6.76 86.52 0.59 4.95 16 14 C -0.10 -2.63 3.73 -9.28 -0.03 -2.66 16 15 H 0.10 2.48 7.95 -2.39 -0.02 2.46 16 16 C 0.10 1.98 4.59 86.50 0.40 2.38 16 17 N -0.61 -14.97 3.31 -815.38 -2.70 -17.67 16 18 C 0.53 12.93 4.90 87.66 0.43 13.36 16 19 O -0.58 -19.61 15.57 -3.04 -0.05 -19.65 16 20 C -0.09 -1.19 0.50 -52.84 -0.03 -1.22 16 21 C -0.15 -1.09 8.12 71.98 0.58 -0.50 16 22 C -0.11 -1.12 4.75 30.73 0.15 -0.97 16 23 C -0.14 -2.63 5.50 29.70 0.16 -2.47 16 24 C 0.52 13.22 7.29 87.71 0.64 13.86 16 25 O -0.62 -21.91 17.78 -3.04 -0.05 -21.97 16 26 N -0.70 -13.90 4.93 -467.31 -2.30 -16.21 16 27 C 0.13 1.66 5.40 86.49 0.47 2.13 16 28 C 0.12 4.00 6.19 86.50 0.54 4.54 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 2.63 6.26 -2.39 -0.01 2.61 16 33 H 0.00 -0.08 7.16 -2.39 -0.02 -0.09 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.03 1.07 7.17 -2.39 -0.02 1.05 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 1.52 6.78 -2.39 -0.02 1.51 16 38 H 0.12 1.34 3.75 -2.39 -0.01 1.33 16 39 H 0.08 0.58 4.80 -2.39 -0.01 0.56 16 40 H 0.11 0.13 8.10 -2.39 -0.02 0.11 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.12 0.54 8.13 -2.39 -0.02 0.52 16 43 H 0.11 0.80 5.26 -2.39 -0.01 0.79 16 44 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 45 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.40 7.70 8.80 -92.71 -0.82 6.88 16 47 H 0.08 1.14 7.87 -2.39 -0.02 1.13 16 48 H 0.12 0.58 8.08 -2.39 -0.02 0.56 16 49 H 0.05 1.92 7.10 -2.39 -0.02 1.90 16 50 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 Total: -1.00 -79.69 372.36 1.21 -78.48 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.15 Total: 15.78 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.22 Total: 21.81 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -7.09 Total: -120.82 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.10 Total: -41.62 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -79.69 1.21 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091942670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.534 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds