Wall clock time and date at job start Tue Mar 31 2020 19:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.54456 * 112.30079 * 2 1 4 4 N 1.48336 * 104.31996 * 96.99006 * 3 2 1 5 5 C 1.36935 * 128.19537 * 221.80839 * 4 3 2 6 6 H 1.08001 * 120.00397 * 15.22100 * 5 4 3 7 7 C 1.38814 * 119.99933 * 195.22096 * 5 4 3 8 8 N 1.31619 * 120.00006 * 9.45585 * 7 5 4 9 9 Si 1.86806 * 119.99961 * 189.45968 * 7 5 4 10 10 H 1.48493 * 109.47308 * 94.83436 * 9 7 5 11 11 H 1.48504 * 109.46895 * 214.83733 * 9 7 5 12 12 H 1.48495 * 109.46920 * 334.83351 * 9 7 5 13 13 C 1.48327 * 103.60596 * 41.80869 * 4 3 2 14 14 C 1.54455 * 104.32271 * 318.19417 * 13 4 3 15 15 H 1.09008 * 112.29653 * 263.01048 * 14 13 4 16 16 C 1.53745 * 109.01200 * 137.36211 * 14 13 4 17 17 N 1.47195 * 106.42343 * 229.45459 * 16 14 13 18 18 C 1.34787 * 126.69900 * 211.34831 * 17 16 14 19 19 O 1.21285 * 119.99272 * 175.63768 * 18 17 16 20 20 C 1.50695 * 120.00047 * 355.63970 * 18 17 16 21 21 C 1.53001 * 109.60282 * 308.97975 * 20 18 17 22 22 C 1.53342 * 109.60021 * 188.49496 * 20 18 17 23 23 C 1.53086 * 108.41197 * 172.69759 * 22 20 18 24 24 C 1.50180 * 109.88967 * 48.91217 * 23 22 20 25 25 O 1.21276 * 118.24336 * 162.39738 * 24 23 22 26 26 N 1.33348 * 123.50368 * 342.41941 * 24 23 22 27 27 C 1.45755 * 124.10990 * 2.20088 * 26 24 23 28 28 C 1.47187 * 106.59790 * 31.36849 * 17 16 14 29 29 H 1.08998 * 109.47031 * 61.01032 * 1 2 3 30 30 H 1.08995 * 109.47193 * 181.01151 * 1 2 3 31 31 H 1.09001 * 109.47238 * 301.01031 * 1 2 3 32 32 H 1.08996 * 110.46350 * 215.69680 * 3 2 1 33 33 H 1.09002 * 110.45889 * 338.15438 * 3 2 1 34 34 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 35 35 H 1.08999 * 110.46442 * 76.90344 * 13 4 3 36 36 H 1.08995 * 110.46432 * 199.35325 * 13 4 3 37 37 H 1.08998 * 110.06447 * 348.69016 * 16 14 13 38 38 H 1.08992 * 110.06799 * 110.15998 * 16 14 13 39 39 H 1.09004 * 109.46949 * 59.99989 * 21 20 18 40 40 H 1.09000 * 109.47260 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.47276 * 300.01032 * 21 20 18 42 42 H 1.08995 * 109.67748 * 292.44443 * 22 20 18 43 43 H 1.08999 * 109.67569 * 52.97969 * 22 20 18 44 44 H 1.08997 * 109.39882 * 288.78356 * 23 22 20 45 45 H 1.09001 * 109.33172 * 169.00033 * 23 22 20 46 46 H 0.97000 * 117.94181 * 182.22511 * 26 24 23 47 47 H 1.09000 * 109.29729 * 220.63222 * 27 26 24 48 48 H 1.08998 * 109.29707 * 101.26733 * 27 26 24 49 49 H 1.08996 * 110.06958 * 209.38482 * 28 17 16 50 50 H 1.09005 * 110.06916 * 87.86942 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4171 1.7021 1.4266 5 6 2.2027 2.8565 2.1313 6 1 1.5502 3.6193 1.7327 7 6 2.8241 3.0463 3.3580 8 7 3.7583 2.2103 3.7589 9 14 2.3341 4.4882 4.4399 10 1 1.3120 4.0454 5.4219 11 1 3.5291 4.9931 5.1628 12 1 1.7720 5.5724 3.5951 13 6 3.0053 0.4288 1.9090 14 6 2.1221 -0.6660 1.2710 15 1 1.3493 -1.0228 1.9520 16 6 3.0241 -1.7975 0.7514 17 7 2.6007 -2.0648 -0.6328 18 6 2.6421 -3.2501 -1.2731 19 8 2.1872 -3.3505 -2.3929 20 6 3.2536 -4.4505 -0.5976 21 6 4.6416 -4.0884 -0.0655 22 6 3.3686 -5.6031 -1.6024 23 6 4.1552 -6.7404 -0.9456 24 6 3.5952 -7.0280 0.4178 25 8 3.8716 -8.0872 0.9400 26 7 2.8101 -6.1813 1.0848 27 6 2.3607 -4.8977 0.5604 28 6 2.1238 -0.7849 -1.1812 29 1 -0.3633 0.4981 -0.8989 30 1 -0.3633 -1.0275 0.0181 31 1 -0.3634 0.5294 0.8808 32 1 3.0279 1.4669 -0.5959 33 1 1.3836 2.1412 -0.3800 34 1 4.1922 2.3428 4.6163 35 1 4.0365 0.3325 1.5692 36 1 2.9569 0.3745 2.9965 37 1 4.0673 -1.4821 0.7690 38 1 2.8933 -2.6905 1.3624 39 1 4.5540 -3.2738 0.6534 40 1 5.0817 -4.9578 0.4229 41 1 5.2778 -3.7754 -0.8934 42 1 2.3731 -5.9541 -1.8739 43 1 3.8936 -5.2613 -2.4944 44 1 5.2019 -6.4505 -0.8535 45 1 4.0804 -7.6349 -1.5640 46 1 2.5202 -6.4354 1.9748 47 1 2.3987 -4.1513 1.3538 48 1 1.3337 -4.9922 0.2079 49 1 1.3569 -0.9634 -1.9348 50 1 2.9556 -0.2316 -1.6173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091942671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:15 Heat of formation + Delta-G solvation = -55.285588 kcal Electronic energy + Delta-G solvation = -31035.415078 eV Core-core repulsion = 27062.397076 eV Total energy + Delta-G solvation = -3973.018003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.35558 -41.13157 -39.82916 -37.70488 -36.61536 -34.57109 -34.32557 -32.68821 -31.73666 -31.38752 -28.06909 -28.00204 -27.37959 -26.67548 -25.69796 -24.40457 -23.05176 -22.18708 -21.06142 -20.07142 -19.12641 -18.61284 -18.26709 -17.92619 -17.03870 -16.92975 -16.85114 -16.46113 -16.13711 -15.79418 -15.63555 -15.44580 -15.19574 -15.13387 -14.68372 -14.33242 -14.08371 -13.98646 -13.60766 -13.50898 -13.20018 -13.14153 -13.06046 -13.02300 -12.92630 -12.70701 -12.58032 -12.47428 -12.21940 -12.07946 -11.92145 -11.76441 -11.74829 -11.45396 -11.35724 -11.32591 -10.84096 -10.79280 -10.67236 -10.14327 -9.70678 -8.82816 -7.86646 -5.21062 1.46125 1.49342 1.50219 1.58412 1.58556 1.87191 2.29145 2.51512 3.20405 3.33599 3.36139 3.48142 3.55901 3.60476 3.64566 3.90069 3.97370 4.04824 4.10125 4.14261 4.24544 4.31457 4.35737 4.47984 4.54923 4.62615 4.66104 4.71692 4.75261 4.81612 4.85072 4.88630 4.96727 4.98094 5.01234 5.04699 5.11251 5.17070 5.25340 5.27525 5.34074 5.45538 5.50293 5.62557 5.76455 5.76829 6.24503 6.24619 6.52220 7.04996 7.07122 7.15586 7.73708 8.52885 9.25817 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.003045 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.832884 B = 9194.312417 C =10056.004836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C 0.134 3.866 4 N -0.617 5.617 5 C -0.232 4.232 6 H 0.076 0.924 7 C -0.057 4.057 8 N -0.942 5.942 9 Si 0.970 3.030 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.271 1.271 13 C 0.167 3.833 14 C -0.108 4.108 15 H 0.090 0.910 16 C 0.108 3.892 17 N -0.605 5.605 18 C 0.547 3.453 19 O -0.570 6.570 20 C -0.085 4.085 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.130 4.130 24 C 0.519 3.481 25 O -0.604 6.604 26 N -0.704 5.704 27 C 0.120 3.880 28 C 0.122 3.878 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.248 0.752 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.408 0.592 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -14.164 -8.487 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C 0.008 3.992 4 N -0.341 5.341 5 C -0.361 4.361 6 H 0.094 0.906 7 C -0.251 4.251 8 N -0.590 5.590 9 Si 0.799 3.201 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.196 1.196 13 C 0.041 3.959 14 C -0.128 4.128 15 H 0.109 0.891 16 C -0.014 4.014 17 N -0.337 5.337 18 C 0.336 3.664 19 O -0.449 6.449 20 C -0.088 4.088 21 C -0.214 4.214 22 C -0.130 4.130 23 C -0.169 4.169 24 C 0.307 3.693 25 O -0.486 6.486 26 N -0.355 5.355 27 C -0.005 4.005 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.245 0.755 47 H 0.121 0.879 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.990 -14.592 -8.897 17.206 hybrid contribution -0.092 1.184 1.129 1.639 sum -2.082 -13.408 -7.768 15.635 Atomic orbital electron populations 1.21517 0.92119 1.01637 1.01782 1.22237 0.96559 0.95231 0.93836 1.22025 0.96820 0.94196 0.86196 1.45309 1.72482 1.10346 1.05918 1.19297 1.21072 0.95160 1.00566 0.90640 1.25554 0.97733 1.01289 1.00567 1.70032 1.27539 1.39909 1.21546 0.85187 0.76687 0.79335 0.78874 1.21465 1.22381 1.19601 1.21609 0.92240 0.83341 0.98695 1.23110 0.98007 0.95111 0.96615 0.89134 1.22551 0.98425 0.98885 0.81545 1.48577 1.62433 1.07971 1.14679 1.20178 0.78096 0.82814 0.85300 1.90696 1.48816 1.84620 1.20813 1.21000 0.97782 0.93290 0.96776 1.22204 0.93253 1.03454 1.02461 1.21473 1.01818 0.92293 0.97434 1.21734 1.02154 1.01113 0.91886 1.20586 0.77523 0.82550 0.88596 1.90753 1.61296 1.26316 1.70260 1.45324 1.50429 1.19167 1.20587 1.21557 0.97381 0.85169 0.96368 1.22057 0.98929 0.83330 0.95822 0.91746 0.91908 0.93463 0.95648 0.93070 0.94242 0.97352 0.92469 0.90595 0.87769 0.90321 0.90512 0.91091 0.90784 0.89455 0.86297 0.86847 0.75499 0.87856 0.90395 0.90211 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 8.61 71.98 0.62 -2.32 16 2 C -0.08 -2.20 1.08 -50.67 -0.05 -2.25 16 3 C 0.13 4.90 6.38 86.52 0.55 5.45 16 4 N -0.62 -28.69 3.37 -686.93 -2.32 -31.00 16 5 C -0.23 -12.14 10.38 84.03 0.87 -11.27 16 6 H 0.08 3.85 7.85 -2.91 -0.02 3.82 16 7 C -0.06 -3.07 5.40 84.86 0.46 -2.61 16 8 N -0.94 -52.78 10.85 21.65 0.23 -52.55 16 9 Si 0.97 43.43 29.56 68.60 2.03 45.46 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.17 7.00 5.51 86.52 0.48 7.47 16 14 C -0.11 -3.21 3.74 -9.28 -0.03 -3.24 16 15 H 0.09 2.62 7.93 -2.38 -0.02 2.60 16 16 C 0.11 2.44 4.54 86.50 0.39 2.83 16 17 N -0.61 -13.96 3.29 -815.39 -2.68 -16.64 16 18 C 0.55 12.45 6.59 87.65 0.58 13.03 16 19 O -0.57 -16.77 16.22 -3.05 -0.05 -16.82 16 20 C -0.08 -1.39 0.49 -52.84 -0.03 -1.41 16 21 C -0.16 -2.30 7.56 71.98 0.54 -1.75 16 22 C -0.09 -1.43 4.29 30.74 0.13 -1.29 16 23 C -0.13 -1.85 5.39 29.71 0.16 -1.69 16 24 C 0.52 10.16 6.91 87.72 0.61 10.77 16 25 O -0.60 -17.11 17.78 -3.02 -0.05 -17.16 16 26 N -0.70 -10.74 5.32 -467.34 -2.49 -13.23 16 27 C 0.12 1.66 5.63 86.49 0.49 2.15 16 28 C 0.12 3.14 6.24 86.50 0.54 3.68 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.95 7.17 -2.39 -0.02 0.93 16 33 H 0.05 1.84 7.92 -2.39 -0.02 1.82 16 34 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.01 0.38 7.17 -2.39 -0.02 0.36 16 36 H 0.06 2.79 6.40 -2.39 -0.02 2.77 16 37 H 0.08 1.82 6.33 -2.39 -0.02 1.81 16 38 H 0.10 1.76 4.16 -2.39 -0.01 1.75 16 39 H 0.08 1.19 4.41 -2.38 -0.01 1.18 16 40 H 0.08 1.03 5.80 -2.39 -0.01 1.01 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.24 8.13 -2.39 -0.02 1.23 16 43 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 44 H 0.12 1.39 6.96 -2.39 -0.02 1.38 16 45 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.41 5.56 8.80 -92.71 -0.82 4.74 16 47 H 0.10 1.22 5.23 -2.39 -0.01 1.21 16 48 H 0.08 1.09 8.11 -2.39 -0.02 1.07 16 49 H 0.08 2.04 7.59 -2.39 -0.02 2.03 16 50 H 0.07 1.80 7.10 -2.38 -0.02 1.78 16 Total: -1.00 -68.82 370.57 1.13 -67.68 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.16 Total: 16.72 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.30 Total: 17.53 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -7.25 Total: -113.42 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.10 Total: -33.98 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.82 1.13 -67.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091942671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.398 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds