Wall clock time and date at job start Tue Mar 31 2020 18:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.01848 * 2 1 4 4 O 1.21277 * 119.99947 * 238.60763 * 3 2 1 5 5 N 1.34777 * 119.99902 * 58.60689 * 3 2 1 6 6 C 1.46504 * 119.99812 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.85804 * 37.32991 * 6 5 3 8 8 C 1.54632 * 110.96688 * 273.54444 * 6 5 3 9 9 C 1.51281 * 104.19789 * 217.04871 * 8 6 5 10 10 O 1.21273 * 124.94617 * 196.23121 * 9 8 6 11 11 N 1.34425 * 110.11039 * 16.25117 * 9 8 6 12 12 C 1.46503 * 124.34574 * 180.41294 * 11 9 8 13 13 C 1.53950 * 113.74146 * 321.28296 * 12 11 9 14 14 N 1.47805 * 86.03824 * 90.88395 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 C 1.46765 * 111.30443 * 0.67305 * 11 9 8 25 25 C 1.54269 * 110.07314 * 121.41470 * 2 1 3 26 26 C 1.54888 * 104.19482 * 95.69601 * 25 2 1 27 27 C 1.54886 * 102.74908 * 37.94660 * 26 25 2 28 28 C 1.53876 * 110.03665 * 238.60619 * 2 1 3 29 29 H 1.09001 * 109.46739 * 60.70366 * 1 2 3 30 30 H 1.09004 * 109.47410 * 180.70303 * 1 2 3 31 31 H 1.08998 * 109.47198 * 300.70216 * 1 2 3 32 32 H 0.96996 * 120.00300 * 0.02562 * 5 3 2 33 33 H 1.09000 * 110.49050 * 98.36557 * 8 6 5 34 34 H 1.09007 * 110.60020 * 335.77945 * 8 6 5 35 35 H 1.09002 * 112.94232 * 189.68971 * 12 11 9 36 36 H 1.08999 * 113.76704 * 205.15172 * 13 12 11 37 37 H 1.09002 * 113.76463 * 336.53966 * 13 12 11 38 38 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 40 40 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 41 41 H 1.08994 * 110.24291 * 101.71759 * 24 11 9 42 42 H 1.08991 * 110.24704 * 223.72032 * 24 11 9 43 43 H 1.08999 * 110.48982 * 214.37527 * 25 2 1 44 44 H 1.09000 * 110.48787 * 337.01951 * 25 2 1 45 45 H 1.09002 * 110.75803 * 279.62868 * 26 25 2 46 46 H 1.09007 * 110.75617 * 156.25992 * 26 25 2 47 47 H 1.09007 * 110.48851 * 203.38171 * 27 26 25 48 48 H 1.09002 * 110.60319 * 80.79084 * 27 26 25 49 49 H 1.09002 * 110.02910 * 359.94819 * 28 2 1 50 50 H 1.09000 * 110.03478 * 121.33225 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0458 1.4159 0.0000 4 8 2.7674 1.7984 -0.8966 5 7 1.7052 2.2572 0.9963 6 6 2.2063 3.6339 0.9960 7 1 2.2398 4.0345 -0.0171 8 6 3.5955 3.7173 1.6701 9 6 3.5669 5.0323 2.4175 10 8 4.5438 5.6089 2.8464 11 7 2.3010 5.4685 2.5372 12 6 1.9162 6.7170 3.2002 13 6 2.7344 7.0234 4.4677 14 7 3.6533 7.7580 3.5729 15 6 4.9776 8.1018 3.6310 16 1 5.4275 8.6563 2.8207 17 6 5.7416 7.7377 4.7312 18 7 5.1934 7.0616 5.7184 19 14 7.5479 8.2074 4.8107 20 1 7.6778 9.6857 4.7571 21 1 8.1346 7.7051 6.0790 22 1 8.2670 7.6052 3.6594 23 6 2.5719 7.9698 2.5913 24 6 1.3535 4.5304 1.9239 25 6 2.0594 -0.7552 1.2366 26 6 2.3298 -2.1897 0.7186 27 6 2.8885 -1.9397 -0.7042 28 6 2.0572 -0.7531 -1.2340 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.1284 1.9513 1.7136 33 1 4.3847 3.7228 0.9183 34 1 3.7359 2.8877 2.3632 35 1 0.8392 6.8093 3.3400 36 1 2.2144 7.6609 5.1828 37 1 3.1790 6.1408 4.9276 38 1 5.7272 6.8074 6.4874 39 1 2.8871 7.8414 1.5558 40 1 2.0040 8.8859 2.7541 41 1 0.8679 3.9287 2.6921 42 1 0.6088 5.0730 1.3419 43 1 2.9819 -0.2993 1.5961 44 1 1.3075 -0.7700 2.0255 45 1 1.4052 -2.7653 0.6749 46 1 3.0699 -2.6923 1.3414 47 1 2.7415 -2.8187 -1.3318 48 1 3.9452 -1.6758 -0.6604 49 1 1.2230 -1.1193 -1.8324 50 1 2.6854 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094768467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:35 Heat of formation + Delta-G solvation = 4.203780 kcal Electronic energy + Delta-G solvation = -30307.870818 eV Core-core repulsion = 26337.432468 eV Total energy + Delta-G solvation = -3970.438350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.86826 -39.89380 -37.79606 -36.90645 -35.84220 -33.93147 -32.06036 -31.53291 -29.78479 -28.97474 -27.33246 -26.90209 -25.90392 -24.67993 -23.31766 -22.76672 -21.26728 -20.91194 -20.33371 -19.41228 -17.69318 -17.34285 -16.72139 -16.63013 -15.80987 -15.69139 -15.28278 -15.16474 -14.67473 -14.46905 -14.17004 -13.92275 -13.60847 -13.53696 -13.34879 -13.22382 -13.00782 -12.93795 -12.65689 -12.37775 -12.19299 -11.91180 -11.69709 -11.45224 -11.35896 -11.31225 -11.18701 -11.06249 -11.02293 -10.88631 -10.77644 -10.62008 -10.47969 -10.01881 -9.82611 -9.68870 -9.36850 -9.28853 -8.69378 -8.34277 -7.88117 -6.52916 -5.43853 -2.70868 2.46993 2.85957 3.52725 3.57064 3.61161 3.61528 3.63763 4.08447 4.20315 4.33272 4.48407 4.69639 4.73767 4.81004 4.87699 4.95084 5.00769 5.06098 5.15467 5.19611 5.30568 5.35109 5.42419 5.47885 5.48639 5.50908 5.51790 5.64206 5.65110 5.73097 5.77942 5.80387 5.88342 5.93561 5.97637 6.01485 6.06397 6.08392 6.34468 6.38198 6.58655 6.61636 6.97480 7.29243 7.35992 7.59061 7.81268 7.93224 8.05556 8.27459 9.19122 9.33476 10.05397 10.88477 11.75332 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002770 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.892331 B =10106.129686 C =10820.701394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C 0.526 3.474 4 O -0.533 6.533 5 N -0.718 5.718 6 C 0.135 3.865 7 H 0.106 0.894 8 C -0.166 4.166 9 C 0.490 3.510 10 O -0.420 6.420 11 N -0.607 5.607 12 C 0.104 3.896 13 C 0.158 3.842 14 N -0.588 5.588 15 C -0.185 4.185 16 H 0.069 0.931 17 C 0.000 4.000 18 N -0.923 5.923 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.288 1.288 23 C 0.103 3.897 24 C 0.109 3.891 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.245 0.755 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 -18.948 -10.695 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C 0.312 3.688 4 O -0.409 6.409 5 N -0.370 5.370 6 C 0.030 3.970 7 H 0.124 0.876 8 C -0.208 4.208 9 C 0.273 3.727 10 O -0.285 6.285 11 N -0.345 5.345 12 C -0.001 4.001 13 C 0.031 3.969 14 N -0.314 5.314 15 C -0.313 4.313 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.734 3.266 20 H -0.218 1.218 21 H -0.220 1.220 22 H -0.215 1.215 23 C -0.025 4.025 24 C -0.016 4.016 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.153 4.153 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.239 -18.243 -10.925 25.591 hybrid contribution 0.600 0.108 0.462 0.765 sum -13.640 -18.135 -10.462 24.987 Atomic orbital electron populations 1.21888 0.92230 1.02846 1.02415 1.21432 0.97108 0.91945 0.98231 1.20517 0.79983 0.87156 0.81119 1.90690 1.36666 1.77182 1.36336 1.45950 1.52387 1.11705 1.26937 1.21825 0.93258 0.81450 1.00467 0.87596 1.22827 0.98242 0.98704 1.01027 1.20635 0.83994 0.86423 0.81650 1.91184 1.35297 1.57947 1.44067 1.47810 1.06660 1.21314 1.58722 1.22940 0.96809 0.83188 0.97115 1.22553 0.87545 0.96269 0.90487 1.45578 1.03828 1.63988 1.18018 1.18603 0.82841 1.27823 1.02000 0.91353 1.24494 0.97078 1.00967 0.96971 1.69762 1.34455 1.44033 1.08961 0.86353 0.86248 0.77461 0.76577 1.21816 1.21971 1.21484 1.22992 0.90366 0.94186 0.94916 1.22033 0.92420 0.91744 0.95410 1.22471 1.01489 0.95588 0.95656 1.22481 1.00974 0.96095 0.96452 1.22363 0.99918 0.97824 0.96123 1.22245 1.00191 0.96885 0.96014 0.91996 0.91314 0.92094 0.76399 0.88548 0.88611 0.90277 0.95105 0.90468 0.94452 0.94230 0.94394 0.91639 0.90460 0.90941 0.90671 0.91296 0.91296 0.91575 0.91454 0.91346 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.04 37.16 0.30 -0.45 16 2 C -0.08 -0.65 0.78 -154.54 -0.12 -0.77 16 3 C 0.53 5.63 6.36 -10.99 -0.07 5.56 16 4 O -0.53 -7.92 14.95 5.56 0.08 -7.84 16 5 N -0.72 -6.55 5.02 -52.13 -0.26 -6.81 16 6 C 0.14 1.58 3.44 -66.20 -0.23 1.36 16 7 H 0.11 1.36 7.72 -51.93 -0.40 0.96 16 8 C -0.17 -2.55 6.58 -26.74 -0.18 -2.73 16 9 C 0.49 9.94 7.49 -10.86 -0.08 9.86 16 10 O -0.42 -11.23 13.03 5.56 0.07 -11.16 16 11 N -0.61 -10.31 3.16 -166.52 -0.53 -10.83 16 12 C 0.10 1.91 4.93 -70.14 -0.35 1.57 16 13 C 0.16 3.79 6.56 -2.84 -0.02 3.77 16 14 N -0.59 -15.70 2.19 -177.87 -0.39 -16.09 16 15 C -0.18 -5.55 8.91 -15.06 -0.13 -5.69 16 16 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 17 C 0.00 0.00 5.34 -17.43 -0.09 -0.09 16 18 N -0.92 -28.98 11.39 55.49 0.63 -28.34 16 19 Si 0.90 24.19 29.55 -169.99 -5.02 19.17 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.29 -7.88 7.11 56.52 0.40 -7.47 16 22 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 23 C 0.10 2.17 8.52 -2.96 -0.03 2.15 16 24 C 0.11 1.22 7.07 -3.03 -0.02 1.20 16 25 C -0.11 -0.78 5.85 -25.07 -0.15 -0.92 16 26 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 27 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 28 C -0.12 -0.96 6.06 -25.61 -0.16 -1.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.26 7.52 -51.93 -0.39 -0.13 16 32 H 0.40 2.57 7.73 -40.82 -0.32 2.26 16 33 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 2.12 6.74 -51.93 -0.35 1.77 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.61 7.78 -51.93 -0.40 0.20 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 44 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 50 H 0.09 0.97 6.39 -51.93 -0.33 0.64 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -37.77 389.43 -9.65 -47.41 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.44 Total: -3.08 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.66 Total: 11.71 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.55 Total: -62.07 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.16 Total: -19.00 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.02 Total: 19.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.77 -9.65 -47.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094768467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.617 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds