Wall clock time and date at job start Tue Mar 31 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.01848 * 2 1 4 4 O 1.21277 * 119.99947 * 238.60763 * 3 2 1 5 5 N 1.34777 * 119.99902 * 58.60689 * 3 2 1 6 6 C 1.46504 * 119.99812 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.85804 * 37.32991 * 6 5 3 8 8 C 1.54632 * 110.96688 * 273.54444 * 6 5 3 9 9 C 1.51281 * 104.19789 * 217.04871 * 8 6 5 10 10 O 1.21273 * 124.94617 * 196.23121 * 9 8 6 11 11 N 1.34425 * 110.11039 * 16.25117 * 9 8 6 12 12 C 1.46503 * 124.34574 * 180.41294 * 11 9 8 13 13 C 1.53950 * 113.74146 * 321.28296 * 12 11 9 14 14 N 1.47805 * 86.03824 * 90.88395 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 C 1.46765 * 111.30443 * 0.67305 * 11 9 8 25 25 C 1.54269 * 110.07314 * 121.41470 * 2 1 3 26 26 C 1.54888 * 104.19482 * 95.69601 * 25 2 1 27 27 C 1.54886 * 102.74908 * 37.94660 * 26 25 2 28 28 C 1.53876 * 110.03665 * 238.60619 * 2 1 3 29 29 H 1.09001 * 109.46739 * 60.70366 * 1 2 3 30 30 H 1.09004 * 109.47410 * 180.70303 * 1 2 3 31 31 H 1.08998 * 109.47198 * 300.70216 * 1 2 3 32 32 H 0.96996 * 120.00300 * 0.02562 * 5 3 2 33 33 H 1.09000 * 110.49050 * 98.36557 * 8 6 5 34 34 H 1.09007 * 110.60020 * 335.77945 * 8 6 5 35 35 H 1.09002 * 112.94232 * 189.68971 * 12 11 9 36 36 H 1.08999 * 113.76704 * 205.15172 * 13 12 11 37 37 H 1.09002 * 113.76463 * 336.53966 * 13 12 11 38 38 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 40 40 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 41 41 H 1.08994 * 110.24291 * 101.71759 * 24 11 9 42 42 H 1.08991 * 110.24704 * 223.72032 * 24 11 9 43 43 H 1.08999 * 110.48982 * 214.37527 * 25 2 1 44 44 H 1.09000 * 110.48787 * 337.01951 * 25 2 1 45 45 H 1.09002 * 110.75803 * 279.62868 * 26 25 2 46 46 H 1.09007 * 110.75617 * 156.25992 * 26 25 2 47 47 H 1.09007 * 110.48851 * 203.38171 * 27 26 25 48 48 H 1.09002 * 110.60319 * 80.79084 * 27 26 25 49 49 H 1.09002 * 110.02910 * 359.94819 * 28 2 1 50 50 H 1.09000 * 110.03478 * 121.33225 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0458 1.4159 0.0000 4 8 2.7674 1.7984 -0.8966 5 7 1.7052 2.2572 0.9963 6 6 2.2063 3.6339 0.9960 7 1 2.2398 4.0345 -0.0171 8 6 3.5955 3.7173 1.6701 9 6 3.5669 5.0323 2.4175 10 8 4.5438 5.6089 2.8464 11 7 2.3010 5.4685 2.5372 12 6 1.9162 6.7170 3.2002 13 6 2.7344 7.0234 4.4677 14 7 3.6533 7.7580 3.5729 15 6 4.9776 8.1018 3.6310 16 1 5.4275 8.6563 2.8207 17 6 5.7416 7.7377 4.7312 18 7 5.1934 7.0616 5.7184 19 14 7.5479 8.2074 4.8107 20 1 7.6778 9.6857 4.7571 21 1 8.1346 7.7051 6.0790 22 1 8.2670 7.6052 3.6594 23 6 2.5719 7.9698 2.5913 24 6 1.3535 4.5304 1.9239 25 6 2.0594 -0.7552 1.2366 26 6 2.3298 -2.1897 0.7186 27 6 2.8885 -1.9397 -0.7042 28 6 2.0572 -0.7531 -1.2340 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.1284 1.9513 1.7136 33 1 4.3847 3.7228 0.9183 34 1 3.7359 2.8877 2.3632 35 1 0.8392 6.8093 3.3400 36 1 2.2144 7.6609 5.1828 37 1 3.1790 6.1408 4.9276 38 1 5.7272 6.8074 6.4874 39 1 2.8871 7.8414 1.5558 40 1 2.0040 8.8859 2.7541 41 1 0.8679 3.9287 2.6921 42 1 0.6088 5.0730 1.3419 43 1 2.9819 -0.2993 1.5961 44 1 1.3075 -0.7700 2.0255 45 1 1.4052 -2.7653 0.6749 46 1 3.0699 -2.6923 1.3414 47 1 2.7415 -2.8187 -1.3318 48 1 3.9452 -1.6758 -0.6604 49 1 1.2230 -1.1193 -1.8324 50 1 2.6854 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094768467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:33 Heat of formation + Delta-G solvation = -22.301864 kcal Electronic energy + Delta-G solvation = -30309.020189 eV Core-core repulsion = 26337.432468 eV Total energy + Delta-G solvation = -3971.587721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87334 -41.12241 -38.91044 -38.23314 -37.25921 -35.14619 -33.96318 -32.42376 -31.03268 -29.58041 -29.12916 -28.17371 -26.49330 -26.43254 -25.15173 -23.71067 -22.21423 -22.04071 -21.49953 -20.22638 -19.21687 -18.68159 -18.08033 -17.72832 -17.23980 -16.85026 -16.53453 -16.19262 -16.07450 -15.74811 -15.47994 -15.23221 -14.98585 -14.64116 -14.54685 -14.28358 -14.19621 -14.07890 -13.73289 -13.47102 -13.20933 -13.19801 -12.94097 -12.76367 -12.74410 -12.55249 -12.50925 -12.20891 -11.98947 -11.93298 -11.89839 -11.71132 -11.59784 -11.55553 -11.37250 -11.36367 -10.79988 -10.69735 -10.44583 -9.96608 -9.36170 -8.62824 -7.71890 -4.96094 1.38333 1.43916 1.47517 1.62528 1.94075 1.98877 2.33215 2.56388 3.38886 3.43961 3.50283 3.53902 3.59708 3.69389 3.79692 3.88774 3.99642 4.05917 4.19983 4.37768 4.46048 4.46463 4.54774 4.58510 4.60724 4.63771 4.68230 4.78920 4.81460 4.86333 4.90757 4.95040 4.96953 5.00684 5.06725 5.12309 5.19906 5.25811 5.26204 5.35236 5.36377 5.43490 5.49201 5.50583 5.62580 6.05262 6.16138 6.48583 6.55081 7.08639 7.26189 7.66674 7.82486 8.74421 9.46483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002770 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.892331 B =10106.129686 C =10820.701394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C 0.523 3.477 4 O -0.581 6.581 5 N -0.700 5.700 6 C 0.151 3.849 7 H 0.097 0.903 8 C -0.157 4.157 9 C 0.478 3.522 10 O -0.500 6.500 11 N -0.605 5.605 12 C 0.134 3.866 13 C 0.152 3.848 14 N -0.619 5.619 15 C -0.183 4.183 16 H 0.057 0.943 17 C -0.058 4.058 18 N -0.948 5.948 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.294 1.294 23 C 0.101 3.899 24 C 0.112 3.888 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.419 0.581 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.236 0.764 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.051 0.949 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.083 0.917 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 -20.429 -11.148 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C 0.310 3.690 4 O -0.460 6.460 5 N -0.353 5.353 6 C 0.045 3.955 7 H 0.115 0.885 8 C -0.199 4.199 9 C 0.263 3.737 10 O -0.371 6.371 11 N -0.341 5.341 12 C 0.030 3.970 13 C 0.026 3.974 14 N -0.345 5.345 15 C -0.313 4.313 16 H 0.075 0.925 17 C -0.250 4.250 18 N -0.599 5.599 19 Si 0.786 3.214 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.025 4.025 24 C -0.011 4.011 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.165 4.165 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.258 0.742 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.159 0.841 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.102 0.898 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.309 -19.745 -11.399 29.240 hybrid contribution 1.797 0.532 0.485 1.935 sum -16.512 -19.213 -10.913 27.584 Atomic orbital electron populations 1.21914 0.89797 1.04255 1.03106 1.21467 0.98863 0.89515 0.98288 1.21165 0.79041 0.88337 0.80409 1.90684 1.38798 1.78217 1.38292 1.45748 1.51988 1.10436 1.27151 1.21543 0.91085 0.83058 0.99814 0.88480 1.22701 1.00452 0.96355 1.00353 1.21401 0.84181 0.87346 0.80783 1.91139 1.37994 1.60564 1.47368 1.47929 1.06932 1.21510 1.57764 1.22623 0.98967 0.82625 0.92768 1.22501 0.88053 0.94489 0.92383 1.45882 1.03886 1.64480 1.20292 1.18775 0.85160 1.26243 1.01089 0.92543 1.25133 1.00465 1.02072 0.97329 1.69946 1.35063 1.45737 1.09182 0.85494 0.82319 0.77669 0.75910 1.20471 1.22085 1.22186 1.23235 0.89030 0.96709 0.93534 1.22391 0.91351 0.91072 0.96248 1.22506 1.01291 0.95534 0.95811 1.22490 1.01840 0.95959 0.95255 1.22374 0.98711 0.97910 0.97465 1.22255 1.00338 0.96743 0.96317 0.92539 0.89621 0.90170 0.74208 0.90495 0.87919 0.84077 0.95214 0.94731 0.95538 0.94895 0.91703 0.88032 0.86848 0.92982 0.88084 0.89294 0.91173 0.90327 0.93429 0.89818 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.04 71.98 0.58 -0.36 16 2 C -0.08 -1.03 0.78 -52.20 -0.04 -1.07 16 3 C 0.52 10.46 6.36 87.66 0.56 11.01 16 4 O -0.58 -17.49 14.95 -3.02 -0.05 -17.54 16 5 N -0.70 -10.74 5.02 -437.24 -2.20 -12.93 16 6 C 0.15 3.19 3.44 46.11 0.16 3.35 16 7 H 0.10 2.32 7.72 -2.39 -0.02 2.30 16 8 C -0.16 -4.82 6.58 30.59 0.20 -4.62 16 9 C 0.48 19.60 7.49 87.90 0.66 20.26 16 10 O -0.50 -28.02 13.03 -3.01 -0.04 -28.06 16 11 N -0.61 -19.12 3.16 -799.35 -2.52 -21.64 16 12 C 0.13 4.56 4.93 46.75 0.23 4.79 16 13 C 0.15 7.30 6.56 86.44 0.57 7.87 16 14 N -0.62 -33.52 2.19 -716.67 -1.57 -35.09 16 15 C -0.18 -11.38 8.91 84.03 0.75 -10.64 16 16 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 17 C -0.06 -3.67 5.34 84.86 0.45 -3.21 16 18 N -0.95 -61.96 11.39 21.65 0.25 -61.72 16 19 Si 0.96 51.65 29.55 68.60 2.03 53.68 16 20 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.29 -15.80 7.11 99.48 0.71 -15.10 16 22 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16 23 C 0.10 4.09 8.52 86.49 0.74 4.83 16 24 C 0.11 1.98 7.07 86.89 0.61 2.60 16 25 C -0.11 -1.25 5.85 31.67 0.19 -1.06 16 26 C -0.12 -1.18 6.91 31.88 0.22 -0.96 16 27 C -0.13 -1.72 6.83 31.67 0.22 -1.50 16 28 C -0.12 -1.86 6.06 31.32 0.19 -1.67 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.08 0.27 7.52 -2.39 -0.02 0.25 16 32 H 0.42 3.46 7.73 -92.71 -0.72 2.75 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 34 H 0.10 2.98 8.08 -2.38 -0.02 2.97 16 35 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.03 1.95 6.74 -2.39 -0.02 1.94 16 38 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.10 1.22 7.78 -2.39 -0.02 1.20 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 0.79 7.85 -2.39 -0.02 0.77 16 44 H 0.10 0.60 7.84 -2.39 -0.02 0.59 16 45 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 50 H 0.06 1.29 6.39 -2.39 -0.02 1.27 16 Total: -1.00 -91.13 389.43 2.39 -88.74 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.22 Total: 4.93 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 6.28 Total: 29.64 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -6.05 Total: -131.38 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.08 Total: -45.60 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.03 Total: 53.68 kcal Total: -91.13 2.39 -88.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094768467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.437 kcal (2) G-P(sol) polarization free energy of solvation -91.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds