Wall clock time and date at job start Tue Mar 31 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.01702 * 2 1 4 4 O 1.21286 * 119.99517 * 238.61031 * 3 2 1 5 5 N 1.34770 * 120.00458 * 58.60571 * 3 2 1 6 6 C 1.46495 * 120.00225 * 180.02562 * 5 3 2 7 7 H 1.08995 * 110.85821 * 328.78783 * 6 5 3 8 8 C 1.54626 * 111.00317 * 92.60746 * 6 5 3 9 9 C 1.51285 * 104.25919 * 142.71285 * 8 6 5 10 10 O 1.21288 * 124.94726 * 164.00931 * 9 8 6 11 11 N 1.34414 * 110.11060 * 344.14346 * 9 8 6 12 12 C 1.46510 * 124.34847 * 179.43672 * 11 9 8 13 13 C 1.53946 * 113.84020 * 321.05438 * 12 11 9 14 14 N 1.47580 * 86.11645 * 90.74870 * 13 12 11 15 15 C 1.36940 * 134.49194 * 204.64076 * 14 13 12 16 16 H 1.08004 * 119.99910 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00130 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99843 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00040 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47249 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47360 * 120.00281 * 19 17 15 22 22 H 1.48499 * 109.47453 * 240.00193 * 19 17 15 23 23 C 1.47585 * 91.01539 * 24.64210 * 14 13 12 24 24 C 1.46762 * 111.30469 * 359.17060 * 11 9 8 25 25 C 1.54267 * 110.07079 * 121.41816 * 2 1 3 26 26 C 1.54882 * 104.19576 * 95.69531 * 25 2 1 27 27 C 1.54888 * 102.75188 * 37.94021 * 26 25 2 28 28 C 1.53872 * 110.02733 * 238.60510 * 2 1 3 29 29 H 1.08999 * 109.47488 * 60.70078 * 1 2 3 30 30 H 1.09003 * 109.47725 * 180.70260 * 1 2 3 31 31 H 1.09001 * 109.47081 * 300.70713 * 1 2 3 32 32 H 0.97007 * 119.99620 * 0.02562 * 5 3 2 33 33 H 1.09002 * 110.48593 * 261.60717 * 8 6 5 34 34 H 1.08995 * 110.48493 * 24.11710 * 8 6 5 35 35 H 1.09002 * 112.94617 * 189.36825 * 12 11 9 36 36 H 1.08996 * 113.77105 * 205.05282 * 13 12 11 37 37 H 1.09002 * 113.76556 * 336.45215 * 13 12 11 38 38 H 0.96992 * 119.99795 * 179.97438 * 18 17 15 39 39 H 1.08996 * 113.76681 * 221.05446 * 23 14 13 40 40 H 1.08994 * 113.76726 * 89.65745 * 23 14 13 41 41 H 1.09000 * 110.24495 * 136.27675 * 24 11 9 42 42 H 1.08994 * 110.24791 * 258.19334 * 24 11 9 43 43 H 1.09001 * 110.48409 * 214.37506 * 25 2 1 44 44 H 1.09004 * 110.48504 * 337.01544 * 25 2 1 45 45 H 1.08999 * 110.75901 * 279.62168 * 26 25 2 46 46 H 1.09001 * 110.75832 * 156.25464 * 26 25 2 47 47 H 1.09001 * 110.48802 * 203.37537 * 27 26 25 48 48 H 1.08996 * 110.48546 * 80.73316 * 27 26 25 49 49 H 1.08998 * 110.03628 * 359.95373 * 28 2 1 50 50 H 1.09005 * 110.02683 * 121.33434 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4159 0.0000 4 8 2.7675 1.7984 -0.8967 5 7 1.7053 2.2573 0.9962 6 6 2.2063 3.6339 0.9959 7 1 3.1887 3.6892 0.5270 8 6 1.2068 4.5873 0.3009 9 6 1.2811 5.8615 1.1130 10 8 0.8664 6.9419 0.7500 11 7 1.8763 5.6226 2.2943 12 6 2.1200 6.6418 3.3182 13 6 2.5493 8.0060 2.7484 14 7 1.1113 8.3373 2.7283 15 6 0.3366 9.2062 2.0070 16 1 -0.7266 9.2604 2.1890 17 6 0.9178 10.0172 1.0419 18 7 2.2135 9.9507 0.8198 19 14 -0.1390 11.2018 0.0576 20 1 -1.5532 11.0843 0.4951 21 1 0.3344 12.5913 0.2822 22 1 -0.0382 10.8720 -1.3868 23 6 0.8435 7.3562 3.7978 24 6 2.2449 4.2085 2.4294 25 6 2.0594 -0.7553 1.2365 26 6 2.3297 -2.1897 0.7185 27 6 2.8884 -1.9397 -0.7043 28 6 2.0570 -0.7531 -1.2340 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3635 -1.0276 0.0126 31 1 -0.3633 0.5248 0.8836 32 1 1.1284 1.9512 1.7136 33 1 1.5087 4.7707 -0.7303 34 1 0.1989 4.1738 0.3346 35 1 2.7548 6.2858 4.1296 36 1 3.1297 8.6103 3.4455 37 1 3.0002 7.9461 1.7578 38 1 2.6195 10.5171 0.1452 39 1 -0.0676 6.7777 3.6451 40 1 0.9228 7.7697 4.8032 41 1 3.2485 4.1184 2.8449 42 1 1.5264 3.6903 3.0644 43 1 2.9819 -0.2993 1.5960 44 1 1.3074 -0.7700 2.0255 45 1 1.4052 -2.7653 0.6749 46 1 3.0698 -2.6923 1.3412 47 1 2.7414 -2.8188 -1.3318 48 1 3.9447 -1.6750 -0.6583 49 1 1.2228 -1.1193 -1.8324 50 1 2.6852 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094768474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:39 Heat of formation + Delta-G solvation = 3.927278 kcal Electronic energy + Delta-G solvation = -30238.313292 eV Core-core repulsion = 26267.862952 eV Total energy + Delta-G solvation = -3970.450340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.87447 -39.90645 -37.81695 -36.92994 -35.84539 -33.94015 -32.06299 -31.53984 -29.81870 -28.99172 -27.33102 -26.89162 -25.92248 -24.68952 -23.32704 -22.78096 -21.25504 -20.95986 -20.32915 -19.44828 -17.70617 -17.38571 -16.76400 -16.54619 -15.80078 -15.78654 -15.25565 -15.07702 -14.77299 -14.53162 -14.13086 -13.87274 -13.71434 -13.48810 -13.29514 -13.23821 -13.03763 -12.91498 -12.66765 -12.38124 -12.24924 -11.95639 -11.69821 -11.50855 -11.37830 -11.26309 -11.19134 -11.09753 -11.05177 -10.89658 -10.79944 -10.66222 -10.44144 -10.03104 -9.82316 -9.66590 -9.37202 -9.29893 -8.69684 -8.35231 -7.88587 -6.53177 -5.44148 -2.71485 2.46000 2.85388 3.51076 3.57169 3.60647 3.61726 3.64046 4.06313 4.17149 4.33243 4.49498 4.69075 4.73424 4.78721 4.85572 4.94226 5.01753 5.05492 5.12212 5.18569 5.27513 5.35591 5.41308 5.44401 5.47849 5.49579 5.53917 5.60542 5.66223 5.72294 5.74687 5.78335 5.85780 5.92572 5.98987 5.99684 6.05699 6.06827 6.33227 6.37607 6.56454 6.60944 6.97530 7.28618 7.36714 7.58784 7.82099 7.92998 8.05013 8.27406 9.18434 9.33251 10.04856 10.87946 11.75044 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.002616 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.320026 B =10699.954589 C =11230.524251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C 0.526 3.474 4 O -0.532 6.532 5 N -0.717 5.717 6 C 0.134 3.866 7 H 0.110 0.890 8 C -0.166 4.166 9 C 0.491 3.509 10 O -0.421 6.421 11 N -0.606 5.606 12 C 0.103 3.897 13 C 0.157 3.843 14 N -0.588 5.588 15 C -0.183 4.183 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.922 5.922 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.294 1.294 23 C 0.104 3.896 24 C 0.108 3.892 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.116 4.116 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.245 0.755 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -27.876 3.897 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C 0.312 3.688 4 O -0.408 6.408 5 N -0.369 5.369 6 C 0.028 3.972 7 H 0.128 0.872 8 C -0.208 4.208 9 C 0.273 3.727 10 O -0.286 6.286 11 N -0.344 5.344 12 C -0.001 4.001 13 C 0.030 3.970 14 N -0.314 5.314 15 C -0.311 4.311 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.221 1.221 23 C -0.024 4.024 24 C -0.016 4.016 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.154 4.154 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.679 -26.638 2.807 26.794 hybrid contribution -0.863 0.490 -0.111 0.998 sum -0.183 -26.148 2.695 26.287 Atomic orbital electron populations 1.21900 0.92182 1.02834 1.02600 1.21430 0.97166 0.91924 0.98170 1.20524 0.79949 0.87075 0.81248 1.90698 1.36885 1.77408 1.35828 1.45931 1.52283 1.11620 1.27076 1.21800 0.99032 0.80317 0.96032 0.87210 1.22826 1.00835 0.95670 1.01509 1.20625 0.79771 0.89975 0.82298 1.91186 1.42381 1.24540 1.70454 1.47807 1.61859 1.06805 1.17974 1.22941 0.98188 0.89532 0.89411 1.22529 0.88216 0.86586 0.99645 1.45553 1.03323 1.44884 1.37642 1.18676 0.89653 1.10989 1.11803 0.91270 1.24516 0.95659 1.00170 0.99302 1.69783 1.08892 1.42383 1.36026 0.86185 0.79285 0.80672 0.80421 1.20959 1.22392 1.22125 1.22980 0.95618 0.90919 0.92885 1.22016 1.00976 0.83189 0.95468 1.22459 1.01324 0.95571 0.95710 1.22485 1.00986 0.96096 0.96467 1.22361 0.99823 0.97881 0.96110 1.22251 1.00262 0.96853 0.96053 0.91882 0.91298 0.92103 0.76447 0.88456 0.88721 0.90256 0.95079 0.90406 0.94480 0.94349 0.94415 0.90429 0.91817 0.91033 0.90703 0.91277 0.91354 0.91548 0.91507 0.91288 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.04 37.16 0.30 -0.55 16 2 C -0.08 -0.63 0.78 -154.54 -0.12 -0.76 16 3 C 0.53 5.61 6.36 -10.99 -0.07 5.54 16 4 O -0.53 -7.96 14.85 5.55 0.08 -7.88 16 5 N -0.72 -6.50 4.99 -52.23 -0.26 -6.76 16 6 C 0.13 1.58 3.53 -66.30 -0.23 1.35 16 7 H 0.11 1.47 7.54 -51.93 -0.39 1.08 16 8 C -0.17 -2.52 6.59 -26.74 -0.18 -2.70 16 9 C 0.49 9.90 7.50 -10.86 -0.08 9.82 16 10 O -0.42 -11.18 13.06 5.55 0.07 -11.11 16 11 N -0.61 -10.30 3.16 -166.63 -0.53 -10.82 16 12 C 0.10 1.91 4.93 -70.14 -0.35 1.56 16 13 C 0.16 3.79 6.57 -2.97 -0.02 3.77 16 14 N -0.59 -15.65 2.18 -178.09 -0.39 -16.04 16 15 C -0.18 -5.48 8.88 -15.06 -0.13 -5.62 16 16 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 17 C 0.00 -0.04 5.36 -17.43 -0.09 -0.13 16 18 N -0.92 -29.13 11.38 55.49 0.63 -28.50 16 19 Si 0.90 24.21 29.55 -169.99 -5.02 19.19 16 20 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.29 -8.03 7.11 56.52 0.40 -7.62 16 23 C 0.10 2.16 8.50 -2.97 -0.03 2.13 16 24 C 0.11 1.23 7.07 -3.12 -0.02 1.21 16 25 C -0.11 -0.66 5.85 -25.08 -0.15 -0.81 16 26 C -0.12 -0.66 6.91 -24.74 -0.17 -0.84 16 27 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 28 C -0.12 -0.96 6.05 -25.61 -0.16 -1.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 7.52 -51.93 -0.39 -0.08 16 32 H 0.40 2.52 7.79 -40.82 -0.32 2.20 16 33 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 2.17 6.77 -51.93 -0.35 1.82 16 38 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.58 7.80 -51.93 -0.41 0.17 16 43 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 44 H 0.07 0.32 7.84 -51.93 -0.41 -0.09 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 50 H 0.09 0.98 6.39 -51.93 -0.33 0.65 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -37.85 389.34 -9.65 -47.50 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.44 Total: -3.34 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -1.67 Total: 11.89 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.54 Total: -62.12 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.15 Total: -18.99 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.85 -9.65 -47.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094768474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.426 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds