Wall clock time and date at job start Tue Mar 31 2020 19:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39832 * 126.46028 * 2 1 4 4 C 1.35452 * 107.86498 * 180.02562 * 3 2 1 5 5 N 1.35539 * 108.87561 * 0.02562 * 4 3 2 6 6 C 1.46498 * 125.68129 * 179.97438 * 5 4 3 7 7 C 1.37654 * 108.63873 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23189 * 180.26692 * 7 5 4 9 9 O 1.21690 * 120.00376 * 91.13066 * 8 7 5 10 10 N 1.34780 * 119.99996 * 271.13281 * 8 7 5 11 11 C 1.46926 * 120.62930 * 4.01568 * 10 8 7 12 12 C 1.52757 * 109.01056 * 233.58168 * 11 10 8 13 13 C 1.53043 * 109.38476 * 305.58914 * 12 11 10 14 14 N 1.46496 * 109.46243 * 181.25676 * 13 12 11 15 15 C 1.36934 * 120.00179 * 299.93562 * 14 13 12 16 16 H 1.08003 * 119.99940 * 314.01284 * 15 14 13 17 17 C 1.38811 * 120.00443 * 134.01309 * 15 14 13 18 18 N 1.31620 * 119.99748 * 3.30034 * 17 15 14 19 19 Si 1.86795 * 120.00339 * 183.29208 * 17 15 14 20 20 H 1.48503 * 109.47116 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47008 * 120.00121 * 19 17 15 22 22 H 1.48498 * 109.47388 * 240.00619 * 19 17 15 23 23 C 1.46501 * 120.00132 * 119.92890 * 14 13 12 24 24 C 1.53005 * 109.46866 * 94.00466 * 23 14 13 25 25 O 1.42902 * 109.46885 * 65.00453 * 24 23 14 26 26 C 1.53045 * 109.53701 * 61.23798 * 13 12 11 27 27 C 1.46925 * 120.63193 * 184.29417 * 10 8 7 28 28 H 1.08993 * 109.47308 * 269.97586 * 1 2 3 29 29 H 1.09001 * 109.46822 * 29.97447 * 1 2 3 30 30 H 1.09003 * 109.47125 * 149.97310 * 1 2 3 31 31 H 1.07997 * 126.06742 * 0.02562 * 3 2 1 32 32 H 1.08006 * 125.56820 * 180.02562 * 4 3 2 33 33 H 1.08992 * 109.47136 * 274.90855 * 6 5 4 34 34 H 1.09000 * 109.46772 * 34.91273 * 6 5 4 35 35 H 1.09000 * 109.46696 * 154.90543 * 6 5 4 36 36 H 1.08999 * 109.58776 * 353.42188 * 11 10 8 37 37 H 1.09003 * 109.58957 * 113.84279 * 11 10 8 38 38 H 1.09001 * 109.56474 * 185.55000 * 12 11 10 39 39 H 1.09002 * 109.35924 * 65.49735 * 12 11 10 40 40 H 1.08998 * 109.45793 * 301.21994 * 13 12 11 41 41 H 0.97003 * 120.00087 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.47458 * 214.00930 * 23 14 13 43 43 H 1.09003 * 109.46776 * 334.00895 * 23 14 13 44 44 H 1.09001 * 109.47145 * 185.00433 * 24 23 14 45 45 H 1.08999 * 109.47288 * 305.00305 * 24 23 14 46 46 H 0.96694 * 113.99770 * 180.02562 * 25 24 23 47 47 H 1.08995 * 109.49707 * 178.68954 * 26 13 12 48 48 H 1.09002 * 109.52567 * 58.59802 * 26 13 12 49 49 H 1.09000 * 109.58482 * 246.15862 * 27 10 8 50 50 H 1.08991 * 109.58738 * 6.43919 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6627 -0.0015 6 6 4.8225 -1.5113 -0.0029 7 6 2.3262 -1.1090 -0.0010 8 6 1.8897 -2.5093 0.0039 9 8 1.6879 -3.0801 1.0595 10 7 1.7122 -3.1639 -1.1608 11 6 2.0356 -2.5171 -2.4398 12 6 0.8173 -2.5937 -3.3582 13 6 0.3686 -4.0513 -3.4863 14 7 -0.7813 -4.1303 -4.3905 15 6 -1.9347 -3.4552 -4.0921 16 1 -2.3437 -3.5001 -3.0936 17 6 -2.5781 -2.7130 -5.0730 18 7 -2.1161 -2.7106 -6.3054 19 14 -4.0997 -1.7181 -4.6439 20 1 -4.4116 -1.8877 -3.2020 21 1 -3.8494 -0.2826 -4.9302 22 1 -5.2473 -2.1925 -5.4582 23 6 -0.6973 -4.9316 -5.6141 24 6 -1.2488 -6.3332 -5.3447 25 8 -2.6432 -6.2467 -5.0445 26 6 -0.0281 -4.5876 -2.1089 27 6 1.1859 -4.5356 -1.1760 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 2.0137 2.1548 0.0004 32 1 4.4974 1.3250 -0.0003 33 1 5.1689 -1.6494 -1.0270 34 1 5.6072 -1.0353 0.5851 35 1 4.5798 -2.4807 0.4325 36 1 2.2953 -1.4729 -2.2659 37 1 2.8751 -3.0315 -2.9075 38 1 1.0775 -2.2052 -4.3429 39 1 0.0075 -1.9997 -2.9346 40 1 1.1871 -4.6493 -3.8869 41 1 -2.5660 -2.1922 -6.9910 42 1 -1.2826 -4.4558 -6.4009 43 1 0.3435 -5.0051 -5.9295 44 1 -1.1051 -6.9560 -6.2276 45 1 -0.7217 -6.7747 -4.4990 46 1 -3.0598 -7.1000 -4.8621 47 1 -0.3696 -5.6182 -2.2044 48 1 -0.8301 -3.9752 -1.6967 49 1 1.9548 -5.2179 -1.5385 50 1 0.8875 -4.8236 -0.1681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098353834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:53 Heat of formation + Delta-G solvation = -7.495703 kcal Electronic energy + Delta-G solvation = -31034.527578 eV Core-core repulsion = 27063.581900 eV Total energy + Delta-G solvation = -3970.945678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.42973 -39.40859 -37.42807 -36.04461 -34.51813 -33.70050 -32.05814 -30.95497 -30.33308 -29.92438 -28.22484 -27.49218 -25.34244 -24.77162 -23.46064 -22.74497 -21.69508 -20.29724 -20.11065 -19.60348 -18.32788 -17.40777 -16.56335 -16.41161 -16.05171 -15.32012 -15.22351 -14.85142 -14.79421 -14.36431 -13.85488 -13.63277 -13.57717 -13.41872 -13.15941 -13.12898 -12.98900 -12.81498 -12.71307 -12.42292 -12.07401 -11.99953 -11.91912 -11.83912 -11.44306 -11.36938 -11.04554 -10.83749 -10.74054 -10.70057 -10.48984 -9.98859 -9.93558 -9.80276 -9.70609 -9.49825 -8.95529 -8.51436 -8.41676 -8.35051 -7.98020 -6.37025 -5.57278 -3.35053 1.96935 2.34361 2.88575 2.99640 3.38018 3.44067 3.51825 3.54150 4.56623 4.58297 4.62397 4.93881 4.99817 5.19317 5.21858 5.26450 5.35504 5.39240 5.41936 5.45543 5.55869 5.59184 5.73754 5.78242 5.83200 5.96350 6.00877 6.07444 6.12471 6.16026 6.17948 6.24936 6.29170 6.44326 6.48137 6.51308 6.68159 6.74265 6.85478 6.87094 6.93226 7.07831 7.11875 7.22369 7.25171 7.55692 7.83428 8.07108 8.25195 8.58776 8.80626 9.35671 9.92647 10.51147 11.35987 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003974 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.992931 B = 7043.823843 C = 8079.390849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.001 4.001 5 N -0.427 5.427 6 C 0.071 3.929 7 C -0.034 4.034 8 C 0.591 3.409 9 O -0.541 6.541 10 N -0.590 5.590 11 C 0.109 3.891 12 C -0.133 4.133 13 C 0.179 3.821 14 N -0.574 5.574 15 C -0.227 4.227 16 H 0.053 0.947 17 C 0.024 3.976 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.128 3.872 24 C 0.063 3.937 25 O -0.539 6.539 26 C -0.139 4.139 27 C 0.113 3.887 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.251 0.749 42 H 0.123 0.877 43 H 0.030 0.970 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.345 0.655 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 1.132 7.789 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.223 4.223 4 C -0.134 4.134 5 N -0.103 5.103 6 C -0.071 4.071 7 C -0.147 4.147 8 C 0.377 3.623 9 O -0.418 6.418 10 N -0.323 5.323 11 C -0.014 4.014 12 C -0.173 4.173 13 C 0.071 3.929 14 N -0.293 5.293 15 C -0.357 4.357 16 H 0.071 0.929 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.002 3.998 24 C -0.017 4.017 25 O -0.339 6.339 26 C -0.179 4.179 27 C -0.009 4.009 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.182 0.818 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.140 0.860 43 H 0.049 0.951 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.187 0.813 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.799 1.300 8.071 16.039 hybrid contribution -0.781 -0.117 0.134 0.801 sum 13.018 1.184 8.205 15.433 Atomic orbital electron populations 1.20226 0.89611 1.02839 1.01740 1.19782 0.95428 0.90838 1.05780 1.20665 0.91695 0.98454 1.11484 1.21784 0.99279 0.82379 1.09922 1.43768 1.04885 1.06225 1.55433 1.22075 0.86045 0.95512 1.03433 1.19997 0.83905 0.93588 1.17177 1.17180 0.77624 0.83826 0.83647 1.90796 1.52329 1.67711 1.30999 1.48176 1.62706 1.15329 1.06051 1.21808 0.98680 0.97600 0.83327 1.22209 0.96018 1.00599 0.98440 1.20331 0.89964 0.92801 0.89767 1.43654 1.09839 1.53746 1.22109 1.18739 0.99971 1.20877 0.96113 0.92906 1.25359 0.98668 0.97379 0.96048 1.69549 1.41259 1.42376 1.00971 0.86364 0.83166 0.80065 0.78072 1.20259 1.21741 1.21798 1.21456 0.97080 0.87790 0.93467 1.23044 0.82401 1.01019 0.95240 1.86913 1.22511 1.31759 1.92730 1.22384 0.96609 1.01861 0.97095 1.21735 0.96423 0.81170 1.01594 0.91806 0.91356 0.91696 0.84258 0.81816 0.90510 0.89604 0.89918 0.90316 0.92179 0.91012 0.90783 0.93698 0.93815 0.85979 0.95124 0.96716 0.96568 0.81258 0.91544 0.91174 0.91988 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.20 36.01 0.37 -0.92 16 2 C -0.11 -1.67 6.21 -104.16 -0.65 -2.31 16 3 C -0.20 -2.50 10.76 -39.98 -0.43 -2.93 16 4 C 0.00 -0.01 11.38 -16.91 -0.19 -0.21 16 5 N -0.43 -5.20 3.16 -120.24 -0.38 -5.58 16 6 C 0.07 0.61 10.98 59.85 0.66 1.27 16 7 C -0.03 -0.52 4.56 -81.98 -0.37 -0.89 16 8 C 0.59 10.00 6.46 -12.85 -0.08 9.92 16 9 O -0.54 -10.73 16.54 5.20 0.09 -10.64 16 10 N -0.59 -9.27 2.98 -174.58 -0.52 -9.79 16 11 C 0.11 1.62 6.32 -3.93 -0.02 1.59 16 12 C -0.13 -2.44 5.29 -26.83 -0.14 -2.58 16 13 C 0.18 3.44 2.59 -67.89 -0.18 3.26 16 14 N -0.57 -13.34 2.37 -165.61 -0.39 -13.73 16 15 C -0.23 -5.95 7.46 -15.06 -0.11 -6.06 16 16 H 0.05 1.45 6.96 -52.48 -0.37 1.09 16 17 C 0.02 0.65 5.40 -17.43 -0.09 0.56 16 18 N -0.90 -25.20 10.76 55.49 0.60 -24.60 16 19 Si 0.89 21.96 29.55 -169.99 -5.02 16.94 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C 0.13 2.91 5.79 -4.04 -0.02 2.89 16 24 C 0.06 1.26 7.39 37.16 0.27 1.53 16 25 O -0.54 -11.59 12.94 -35.23 -0.46 -12.04 16 26 C -0.14 -2.49 5.29 -26.61 -0.14 -2.63 16 27 C 0.11 1.75 6.42 -3.71 -0.02 1.73 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.08 7.96 -51.93 -0.41 0.66 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.80 7.67 -51.93 -0.40 0.40 16 36 H 0.08 1.16 6.32 -51.93 -0.33 0.84 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 40 H 0.04 0.81 7.74 -51.93 -0.40 0.41 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.12 3.26 5.16 -51.93 -0.27 2.99 16 43 H 0.03 0.64 7.84 -51.93 -0.41 0.23 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.35 5.50 9.12 45.56 0.42 5.92 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.07 1.43 7.15 -51.93 -0.37 1.06 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 1.37 7.03 -51.93 -0.36 1.00 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -32.89 398.62 -8.76 -41.64 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.51 Total: 7.59 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.16 Total: 4.21 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.69 Total: -53.71 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.37 Total: -22.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.89 -8.76 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098353834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.149 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds