Wall clock time and date at job start Tue Mar 31 2020 19:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39832 * 126.46028 * 2 1 4 4 C 1.35452 * 107.86498 * 180.02562 * 3 2 1 5 5 N 1.35539 * 108.87561 * 0.02562 * 4 3 2 6 6 C 1.46498 * 125.68129 * 179.97438 * 5 4 3 7 7 C 1.37654 * 108.63873 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23189 * 180.26692 * 7 5 4 9 9 O 1.21690 * 120.00376 * 91.13066 * 8 7 5 10 10 N 1.34780 * 119.99996 * 271.13281 * 8 7 5 11 11 C 1.46926 * 120.62930 * 4.01568 * 10 8 7 12 12 C 1.52757 * 109.01056 * 233.58168 * 11 10 8 13 13 C 1.53043 * 109.38476 * 305.58914 * 12 11 10 14 14 N 1.46496 * 109.46243 * 181.25676 * 13 12 11 15 15 C 1.36934 * 120.00179 * 299.93562 * 14 13 12 16 16 H 1.08003 * 119.99940 * 314.01284 * 15 14 13 17 17 C 1.38811 * 120.00443 * 134.01309 * 15 14 13 18 18 N 1.31620 * 119.99748 * 3.30034 * 17 15 14 19 19 Si 1.86795 * 120.00339 * 183.29208 * 17 15 14 20 20 H 1.48503 * 109.47116 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47008 * 120.00121 * 19 17 15 22 22 H 1.48498 * 109.47388 * 240.00619 * 19 17 15 23 23 C 1.46501 * 120.00132 * 119.92890 * 14 13 12 24 24 C 1.53005 * 109.46866 * 94.00466 * 23 14 13 25 25 O 1.42902 * 109.46885 * 65.00453 * 24 23 14 26 26 C 1.53045 * 109.53701 * 61.23798 * 13 12 11 27 27 C 1.46925 * 120.63193 * 184.29417 * 10 8 7 28 28 H 1.08993 * 109.47308 * 269.97586 * 1 2 3 29 29 H 1.09001 * 109.46822 * 29.97447 * 1 2 3 30 30 H 1.09003 * 109.47125 * 149.97310 * 1 2 3 31 31 H 1.07997 * 126.06742 * 0.02562 * 3 2 1 32 32 H 1.08006 * 125.56820 * 180.02562 * 4 3 2 33 33 H 1.08992 * 109.47136 * 274.90855 * 6 5 4 34 34 H 1.09000 * 109.46772 * 34.91273 * 6 5 4 35 35 H 1.09000 * 109.46696 * 154.90543 * 6 5 4 36 36 H 1.08999 * 109.58776 * 353.42188 * 11 10 8 37 37 H 1.09003 * 109.58957 * 113.84279 * 11 10 8 38 38 H 1.09001 * 109.56474 * 185.55000 * 12 11 10 39 39 H 1.09002 * 109.35924 * 65.49735 * 12 11 10 40 40 H 1.08998 * 109.45793 * 301.21994 * 13 12 11 41 41 H 0.97003 * 120.00087 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.47458 * 214.00930 * 23 14 13 43 43 H 1.09003 * 109.46776 * 334.00895 * 23 14 13 44 44 H 1.09001 * 109.47145 * 185.00433 * 24 23 14 45 45 H 1.08999 * 109.47288 * 305.00305 * 24 23 14 46 46 H 0.96694 * 113.99770 * 180.02562 * 25 24 23 47 47 H 1.08995 * 109.49707 * 178.68954 * 26 13 12 48 48 H 1.09002 * 109.52567 * 58.59802 * 26 13 12 49 49 H 1.09000 * 109.58482 * 246.15862 * 27 10 8 50 50 H 1.08991 * 109.58738 * 6.43919 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6627 -0.0015 6 6 4.8225 -1.5113 -0.0029 7 6 2.3262 -1.1090 -0.0010 8 6 1.8897 -2.5093 0.0039 9 8 1.6879 -3.0801 1.0595 10 7 1.7122 -3.1639 -1.1608 11 6 2.0356 -2.5171 -2.4398 12 6 0.8173 -2.5937 -3.3582 13 6 0.3686 -4.0513 -3.4863 14 7 -0.7813 -4.1303 -4.3905 15 6 -1.9347 -3.4552 -4.0921 16 1 -2.3437 -3.5001 -3.0936 17 6 -2.5781 -2.7130 -5.0730 18 7 -2.1161 -2.7106 -6.3054 19 14 -4.0997 -1.7181 -4.6439 20 1 -4.4116 -1.8877 -3.2020 21 1 -3.8494 -0.2826 -4.9302 22 1 -5.2473 -2.1925 -5.4582 23 6 -0.6973 -4.9316 -5.6141 24 6 -1.2488 -6.3332 -5.3447 25 8 -2.6432 -6.2467 -5.0445 26 6 -0.0281 -4.5876 -2.1089 27 6 1.1859 -4.5356 -1.1760 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 2.0137 2.1548 0.0004 32 1 4.4974 1.3250 -0.0003 33 1 5.1689 -1.6494 -1.0270 34 1 5.6072 -1.0353 0.5851 35 1 4.5798 -2.4807 0.4325 36 1 2.2953 -1.4729 -2.2659 37 1 2.8751 -3.0315 -2.9075 38 1 1.0775 -2.2052 -4.3429 39 1 0.0075 -1.9997 -2.9346 40 1 1.1871 -4.6493 -3.8869 41 1 -2.5660 -2.1922 -6.9910 42 1 -1.2826 -4.4558 -6.4009 43 1 0.3435 -5.0051 -5.9295 44 1 -1.1051 -6.9560 -6.2276 45 1 -0.7217 -6.7747 -4.4990 46 1 -3.0598 -7.1000 -4.8621 47 1 -0.3696 -5.6182 -2.2044 48 1 -0.8301 -3.9752 -1.6967 49 1 1.9548 -5.2179 -1.5385 50 1 0.8875 -4.8236 -0.1681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098353834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:51 Heat of formation + Delta-G solvation = -29.006960 kcal Electronic energy + Delta-G solvation = -31035.460376 eV Core-core repulsion = 27063.581900 eV Total energy + Delta-G solvation = -3971.878476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.44576 -40.69048 -38.97550 -37.62092 -36.18486 -34.62919 -33.80566 -32.38096 -31.95654 -31.01545 -29.51433 -28.97014 -26.63503 -26.08568 -24.98564 -24.16366 -23.01836 -21.91398 -21.16757 -21.02666 -19.59119 -18.56520 -18.09952 -18.03575 -17.51857 -16.81105 -16.38467 -16.19948 -16.06073 -15.93043 -15.48408 -15.14110 -14.82776 -14.78978 -14.50071 -14.30029 -14.14691 -14.03872 -13.94199 -13.65436 -13.62527 -13.36218 -13.07252 -12.89643 -12.87706 -12.81639 -12.70749 -12.64020 -12.47946 -12.32685 -12.10832 -11.79316 -11.54137 -11.50410 -11.26590 -11.08303 -10.54220 -10.41034 -9.74795 -9.44062 -9.00305 -8.30913 -7.58536 -5.40479 0.96301 1.19075 1.43189 1.46890 1.54006 1.80900 1.97318 2.30452 2.56265 3.42463 3.47758 3.60969 3.89558 3.91274 3.94153 4.14268 4.20708 4.23457 4.32277 4.34520 4.38192 4.41148 4.41583 4.60570 4.62371 4.63738 4.70221 4.75786 4.77739 4.80538 4.82499 4.93477 4.98498 5.07072 5.11892 5.14834 5.16283 5.18883 5.41443 5.44625 5.59390 5.65347 5.76937 5.92616 6.06509 6.10694 6.26723 6.42842 6.70401 6.96260 7.27447 7.38759 8.01775 8.52480 9.27342 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003974 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.992931 B = 7043.823843 C = 8079.390849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.133 4.133 3 C -0.218 4.218 4 C 0.022 3.978 5 N -0.425 5.425 6 C 0.064 3.936 7 C -0.066 4.066 8 C 0.594 3.406 9 O -0.579 6.579 10 N -0.589 5.589 11 C 0.124 3.876 12 C -0.121 4.121 13 C 0.176 3.824 14 N -0.586 5.586 15 C -0.214 4.214 16 H 0.033 0.967 17 C -0.021 4.021 18 N -0.917 5.917 19 Si 0.936 3.064 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.296 1.296 23 C 0.121 3.879 24 C 0.070 3.930 25 O -0.573 6.573 26 C -0.126 4.126 27 C 0.120 3.880 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.156 0.844 32 H 0.209 0.791 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.369 0.631 47 H 0.068 0.932 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.602 1.124 8.131 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.142 4.142 3 C -0.242 4.242 4 C -0.111 4.111 5 N -0.100 5.100 6 C -0.076 4.076 7 C -0.179 4.179 8 C 0.381 3.619 9 O -0.459 6.459 10 N -0.320 5.320 11 C 0.001 3.999 12 C -0.161 4.161 13 C 0.070 3.930 14 N -0.306 5.306 15 C -0.345 4.345 16 H 0.051 0.949 17 C -0.217 4.217 18 N -0.563 5.563 19 Si 0.766 3.234 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.223 1.223 23 C -0.005 4.005 24 C -0.010 4.010 25 O -0.377 6.377 26 C -0.166 4.166 27 C -0.002 4.002 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.173 0.827 32 H 0.226 0.774 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.215 0.785 47 H 0.087 0.913 48 H 0.052 0.948 49 H 0.114 0.886 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.881 1.264 8.412 18.903 hybrid contribution -1.713 -0.143 0.056 1.720 sum 15.168 1.121 8.468 17.408 Atomic orbital electron populations 1.20163 0.90626 1.01839 1.01488 1.19988 0.95301 0.92185 1.06682 1.20939 0.92205 0.98600 1.12428 1.22467 1.00080 0.82092 1.06493 1.44045 1.04593 1.07086 1.54286 1.22362 0.85276 0.94747 1.05209 1.19782 0.85744 0.92463 1.19896 1.17446 0.76826 0.84414 0.83200 1.90763 1.54086 1.68780 1.32239 1.48233 1.62210 1.15371 1.06184 1.21710 0.97599 0.98462 0.82142 1.22016 0.96469 0.99325 0.98330 1.20505 0.89313 0.93657 0.89554 1.43802 1.10108 1.53932 1.22789 1.18630 1.00902 1.20063 0.94897 0.94898 1.25805 1.00853 0.98740 0.96274 1.69721 1.42137 1.43231 1.01239 0.85692 0.81061 0.79150 0.77493 1.20372 1.21653 1.22310 1.21378 0.97744 0.89063 0.92270 1.22892 0.81734 0.99447 0.96944 1.86832 1.23594 1.34300 1.92975 1.22185 0.96687 1.00994 0.96696 1.21690 0.96183 0.81814 1.00558 0.91724 0.90320 0.94628 0.82658 0.77434 0.88564 0.86451 0.91379 0.89936 0.88884 0.92258 0.94499 0.91231 0.94482 0.89698 0.93250 0.94182 0.94951 0.78521 0.91312 0.94831 0.88644 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 10.20 71.24 0.73 -1.87 16 2 C -0.13 -3.99 6.21 -19.56 -0.12 -4.11 16 3 C -0.22 -5.06 10.76 22.01 0.24 -4.83 16 4 C 0.02 0.40 11.38 83.48 0.95 1.35 16 5 N -0.42 -9.17 3.16 -534.31 -1.69 -10.86 16 6 C 0.06 0.88 10.98 127.77 1.40 2.28 16 7 C -0.07 -1.95 4.56 40.35 0.18 -1.77 16 8 C 0.59 20.01 6.46 86.45 0.56 20.57 16 9 O -0.58 -23.29 16.54 -4.32 -0.07 -23.36 16 10 N -0.59 -17.99 2.98 -824.45 -2.46 -20.44 16 11 C 0.12 3.47 6.32 86.22 0.54 4.01 16 12 C -0.12 -4.46 5.29 30.53 0.16 -4.30 16 13 C 0.18 6.64 2.59 45.02 0.12 6.76 16 14 N -0.59 -27.35 2.37 -677.87 -1.60 -28.95 16 15 C -0.21 -11.51 7.46 84.03 0.63 -10.88 16 16 H 0.03 1.90 6.96 -2.91 -0.02 1.88 16 17 C -0.02 -1.16 5.40 84.86 0.46 -0.70 16 18 N -0.92 -52.81 10.76 21.65 0.23 -52.57 16 19 Si 0.94 46.46 29.55 68.60 2.03 48.49 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 23 C 0.12 5.44 5.79 86.38 0.50 5.94 16 24 C 0.07 2.65 7.39 71.98 0.53 3.18 16 25 O -0.57 -24.24 12.94 -148.98 -1.93 -26.17 16 26 C -0.13 -4.47 5.29 30.67 0.16 -4.31 16 27 C 0.12 3.56 6.42 86.36 0.55 4.12 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 31 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.16 7.67 -2.39 -0.02 1.14 16 36 H 0.08 2.32 6.32 -2.39 -0.02 2.30 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.61 7.71 -2.39 -0.02 1.59 16 40 H 0.07 2.31 7.74 -2.39 -0.02 2.29 16 41 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.09 4.58 5.16 -2.39 -0.01 4.57 16 43 H 0.05 1.98 7.84 -2.39 -0.02 1.96 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.37 11.31 9.12 -74.06 -0.68 10.63 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.03 1.42 7.15 -2.39 -0.02 1.41 16 49 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.08 2.45 7.03 -2.39 -0.02 2.43 16 Total: -1.00 -74.81 398.62 2.37 -72.45 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.26 Total: 25.97 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 7.59 Total: 15.44 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -5.52 Total: -112.82 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.00 Total: -49.53 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.81 2.37 -72.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098353834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds