Wall clock time and date at job start Tue Mar 31 2020 19:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35454 * 125.56044 * 2 1 4 4 C 1.39836 * 107.86457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.45910 * 179.97438 * 4 3 2 6 6 C 1.37873 * 107.08309 * 359.97438 * 4 3 2 7 7 C 1.46685 * 126.23167 * 179.97438 * 6 4 3 8 8 O 1.21688 * 119.99660 * 253.82977 * 7 6 4 9 9 N 1.34779 * 119.99750 * 73.83225 * 7 6 4 10 10 C 1.46928 * 120.62727 * 184.78971 * 9 7 6 11 11 C 1.52758 * 109.00936 * 233.58104 * 10 9 7 12 12 C 1.53039 * 109.38126 * 305.59189 * 11 10 9 13 13 N 1.46502 * 109.45695 * 181.25919 * 12 11 10 14 14 C 1.36930 * 120.00342 * 299.92681 * 13 12 11 15 15 H 1.08000 * 119.99621 * 315.65594 * 14 13 12 16 16 C 1.38810 * 120.00189 * 135.65199 * 14 13 12 17 17 N 1.31617 * 120.00047 * 3.32762 * 16 14 13 18 18 Si 1.86798 * 120.00211 * 183.32892 * 16 14 13 19 19 H 1.48498 * 109.47328 * 59.99614 * 18 16 14 20 20 H 1.48497 * 109.47431 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46861 * 300.00172 * 18 16 14 22 22 C 1.46506 * 119.99660 * 119.93146 * 13 12 11 23 23 C 1.52998 * 109.47124 * 84.22807 * 22 13 12 24 24 O 1.42896 * 109.47445 * 64.99836 * 23 22 13 25 25 C 1.53042 * 109.54127 * 61.23749 * 12 11 10 26 26 C 1.46923 * 120.63300 * 5.06672 * 9 7 6 27 27 N 1.35530 * 125.56569 * 179.97438 * 2 1 3 28 28 H 0.96997 * 125.67956 * 0.02839 * 27 2 1 29 29 H 1.08994 * 109.46937 * 90.03219 * 1 2 3 30 30 H 1.08999 * 109.46530 * 210.02732 * 1 2 3 31 31 H 1.09002 * 109.47152 * 330.02673 * 1 2 3 32 32 H 1.08002 * 126.07201 * 359.70922 * 3 2 1 33 33 H 1.08996 * 109.47328 * 90.02052 * 5 4 3 34 34 H 1.09003 * 109.47028 * 210.01655 * 5 4 3 35 35 H 1.09002 * 109.47111 * 330.01549 * 5 4 3 36 36 H 1.09006 * 109.58650 * 353.41781 * 10 9 7 37 37 H 1.08998 * 109.58301 * 113.83851 * 10 9 7 38 38 H 1.08992 * 109.56667 * 185.55257 * 11 10 9 39 39 H 1.08998 * 109.35602 * 65.49961 * 11 10 9 40 40 H 1.09009 * 109.46051 * 301.21463 * 12 11 10 41 41 H 0.97001 * 120.00442 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46793 * 204.22543 * 22 13 12 43 43 H 1.08997 * 109.47307 * 324.22107 * 22 13 12 44 44 H 1.09007 * 109.47083 * 184.99968 * 23 22 13 45 45 H 1.09000 * 109.46783 * 304.99536 * 23 22 13 46 46 H 0.96703 * 114.00127 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.49508 * 178.68517 * 25 12 11 48 48 H 1.08997 * 109.49347 * 58.58576 * 25 12 11 49 49 H 1.09000 * 109.58837 * 246.16041 * 26 9 7 50 50 H 1.08998 * 109.58505 * 6.44011 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 0.0006 5 6 4.8485 1.5593 0.0003 6 6 3.6122 -0.7018 0.0015 7 6 4.7861 -1.5814 0.0019 8 8 5.0967 -2.1817 -1.0100 9 7 5.5205 -1.7246 1.1229 10 6 6.7570 -2.5180 1.1114 11 6 6.6837 -3.5697 2.2169 12 6 6.3895 -2.8828 3.5525 13 7 6.3486 -3.8865 4.6189 14 6 5.4365 -4.9064 4.5646 15 1 4.4114 -4.7002 4.2946 16 6 5.8295 -6.2053 4.8567 17 7 7.0622 -6.4474 5.2492 18 14 4.6088 -7.6097 4.6927 19 1 4.1288 -7.6870 3.2896 20 1 5.2711 -8.8868 5.0609 21 1 3.4558 -7.3716 5.5978 22 6 7.2836 -3.7990 5.7434 23 6 6.7237 -2.8435 6.7990 24 8 5.5228 -3.3903 7.3475 25 6 5.0389 -2.1674 3.4737 26 6 5.0966 -1.0952 2.3810 27 7 2.2953 -1.1025 0.0005 28 1 1.9835 -2.0209 0.0005 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3632 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.9545 2.1269 -0.0044 33 1 5.1430 1.7725 1.0278 34 1 5.6642 1.0504 -0.5133 35 1 4.6219 2.4933 -0.5140 36 1 6.8653 -3.0120 0.1457 37 1 7.6118 -1.8651 1.2880 38 1 7.6346 -4.0984 2.2814 39 1 5.8876 -4.2784 1.9892 40 1 7.1733 -2.1564 3.7677 41 1 7.3368 -7.3550 5.4536 42 1 7.4172 -4.7877 6.1826 43 1 8.2445 -3.4262 5.3889 44 1 7.4578 -2.7093 7.5936 45 1 6.5068 -1.8798 6.3382 46 1 5.1117 -2.8359 8.0248 47 1 4.8193 -1.6980 4.4327 48 1 4.2583 -2.8894 3.2341 49 1 5.8132 -0.3239 2.6634 50 1 4.1108 -0.6485 2.2521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098406888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:12 Heat of formation + Delta-G solvation = -22.668052 kcal Electronic energy + Delta-G solvation = -30586.262272 eV Core-core repulsion = 26614.658672 eV Total energy + Delta-G solvation = -3971.603600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.48221 -39.45913 -37.46189 -36.09005 -34.59443 -33.04214 -32.04085 -31.57959 -30.67323 -30.25900 -27.90209 -27.68901 -26.44648 -24.63073 -23.25362 -22.70504 -21.22620 -20.50053 -20.19386 -19.56169 -18.77984 -17.58405 -16.57925 -16.42801 -16.10417 -15.33936 -14.94243 -14.87929 -14.56283 -14.38005 -13.85291 -13.69536 -13.52201 -13.37013 -13.25151 -13.21611 -12.99270 -12.86321 -12.74417 -12.49523 -12.37492 -12.07388 -12.04356 -11.96215 -11.50086 -11.41754 -11.14043 -10.87015 -10.76207 -10.71162 -10.51021 -10.10379 -9.92210 -9.80919 -9.73630 -9.52549 -9.03501 -8.79998 -8.40812 -8.38421 -7.94852 -6.40580 -5.65580 -3.37790 1.84683 2.41446 2.72499 3.15975 3.41409 3.45489 3.47237 3.52708 4.51880 4.67560 4.72731 4.96908 5.11226 5.18379 5.22544 5.31243 5.33345 5.34428 5.45628 5.53579 5.55053 5.62989 5.65463 5.68294 5.74323 5.83405 5.95455 5.97886 6.01280 6.07563 6.12340 6.16581 6.26053 6.28634 6.42526 6.49826 6.64950 6.72821 6.79959 6.85715 6.91576 6.95118 7.11776 7.20787 7.39070 7.55676 7.80354 7.98820 8.24895 8.50512 8.74522 9.31207 9.88362 10.46721 11.31203 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003490 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.454159 B = 8021.428628 C = 8327.553078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.032 3.968 3 C -0.199 4.199 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.028 4.028 7 C 0.587 3.413 8 O -0.542 6.542 9 N -0.588 5.588 10 C 0.111 3.889 11 C -0.134 4.134 12 C 0.179 3.821 13 N -0.573 5.573 14 C -0.230 4.230 15 H 0.052 0.948 16 C 0.019 3.981 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.132 3.868 23 C 0.059 3.941 24 O -0.544 6.544 25 C -0.139 4.139 26 C 0.111 3.889 27 N -0.526 5.526 28 H 0.418 0.582 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.254 0.746 42 H 0.125 0.875 43 H 0.031 0.969 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.347 0.653 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 16.035 -5.612 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.223 4.223 4 C -0.126 4.126 5 C -0.140 4.140 6 C -0.142 4.142 7 C 0.373 3.627 8 O -0.419 6.419 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.174 4.174 12 C 0.071 3.929 13 N -0.292 5.292 14 C -0.361 4.361 15 H 0.070 0.930 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.726 3.274 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.006 3.994 23 C -0.021 4.021 24 O -0.345 6.345 25 C -0.179 4.179 26 C -0.012 4.012 27 N -0.121 5.121 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.142 0.858 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.190 0.810 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.167 14.858 -6.515 17.357 hybrid contribution -0.954 -0.662 0.485 1.258 sum -7.121 14.197 -6.030 16.989 Atomic orbital electron populations 1.20355 0.87893 1.03431 1.02697 1.20393 0.93474 0.86095 1.08400 1.20423 0.91700 0.97617 1.12564 1.19724 0.95484 0.90658 1.06744 1.20188 0.94061 0.97943 1.01840 1.19931 0.83969 0.93858 1.16470 1.17179 0.82122 0.80132 0.83309 1.90813 1.71239 1.46967 1.32894 1.48075 1.24798 1.50174 1.08917 1.21732 0.84364 0.93618 1.01394 1.22222 1.03228 0.97350 0.94573 1.20314 0.93254 0.90798 0.88559 1.43640 1.39353 1.27856 1.18376 1.18693 0.89616 0.85093 1.42661 0.93017 1.25353 0.95346 0.97596 0.99609 1.69578 1.16858 1.19331 1.48524 0.86492 0.80923 0.82069 0.77961 1.21067 1.21670 1.20976 1.21380 0.89256 1.01773 0.86960 1.23129 0.85807 0.97122 0.96058 1.86863 1.40897 1.48877 1.57819 1.22368 1.01658 0.97212 0.96622 1.21843 1.00299 0.95685 0.83381 1.41729 1.04763 1.08703 1.56887 0.74504 0.90976 0.91633 0.89952 0.84364 0.91554 0.92262 0.91625 0.89634 0.91857 0.90881 0.91134 0.93495 0.93582 0.85805 0.95108 0.96458 0.96435 0.81035 0.91463 0.91542 0.91752 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.41 36.01 0.37 -0.24 16 2 C 0.03 0.35 7.13 -81.95 -0.58 -0.24 16 3 C -0.20 -2.24 10.66 -39.98 -0.43 -2.66 16 4 C -0.12 -1.51 5.83 -104.16 -0.61 -2.12 16 5 C -0.08 -0.89 10.20 36.00 0.37 -0.53 16 6 C -0.03 -0.40 5.03 -81.98 -0.41 -0.81 16 7 C 0.59 9.81 7.19 -12.85 -0.09 9.72 16 8 O -0.54 -10.84 16.52 5.20 0.09 -10.75 16 9 N -0.59 -9.19 2.98 -174.58 -0.52 -9.71 16 10 C 0.11 1.79 6.41 -3.93 -0.03 1.77 16 11 C -0.13 -2.55 5.29 -26.84 -0.14 -2.69 16 12 C 0.18 3.44 2.59 -67.89 -0.18 3.26 16 13 N -0.57 -13.38 2.33 -165.61 -0.39 -13.77 16 14 C -0.23 -6.07 7.99 -15.06 -0.12 -6.19 16 15 H 0.05 1.40 6.92 -52.49 -0.36 1.04 16 16 C 0.02 0.53 5.37 -17.43 -0.09 0.44 16 17 N -0.90 -25.35 10.73 55.49 0.60 -24.75 16 18 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.13 3.03 5.54 -4.04 -0.02 3.00 16 23 C 0.06 1.15 7.38 37.16 0.27 1.42 16 24 O -0.54 -11.31 13.41 -35.23 -0.47 -11.78 16 25 C -0.14 -2.38 5.29 -26.61 -0.14 -2.53 16 26 C 0.11 1.58 6.29 -3.72 -0.02 1.55 16 27 N -0.53 -6.51 6.10 -5.69 -0.03 -6.55 16 28 H 0.42 4.60 8.96 -40.82 -0.37 4.24 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.07 1.54 7.71 -51.93 -0.40 1.14 16 40 H 0.05 0.85 7.87 -51.92 -0.41 0.44 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 3.32 5.19 -51.93 -0.27 3.05 16 43 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 44 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.35 5.25 9.12 45.56 0.42 5.66 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 1.08 6.13 -51.93 -0.32 0.77 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -32.67 399.51 -9.07 -41.74 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.48 Total: 9.48 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.85 Total: 3.16 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.35 Total: -54.77 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.39 Total: -22.54 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.67 -9.07 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098406888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.075 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds