Wall clock time and date at job start Tue Mar 31 2020 19:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35454 * 125.56044 * 2 1 4 4 C 1.39836 * 107.86457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.45910 * 179.97438 * 4 3 2 6 6 C 1.37873 * 107.08309 * 359.97438 * 4 3 2 7 7 C 1.46685 * 126.23167 * 179.97438 * 6 4 3 8 8 O 1.21688 * 119.99660 * 253.82977 * 7 6 4 9 9 N 1.34779 * 119.99750 * 73.83225 * 7 6 4 10 10 C 1.46928 * 120.62727 * 184.78971 * 9 7 6 11 11 C 1.52758 * 109.00936 * 233.58104 * 10 9 7 12 12 C 1.53039 * 109.38126 * 305.59189 * 11 10 9 13 13 N 1.46502 * 109.45695 * 181.25919 * 12 11 10 14 14 C 1.36930 * 120.00342 * 299.92681 * 13 12 11 15 15 H 1.08000 * 119.99621 * 315.65594 * 14 13 12 16 16 C 1.38810 * 120.00189 * 135.65199 * 14 13 12 17 17 N 1.31617 * 120.00047 * 3.32762 * 16 14 13 18 18 Si 1.86798 * 120.00211 * 183.32892 * 16 14 13 19 19 H 1.48498 * 109.47328 * 59.99614 * 18 16 14 20 20 H 1.48497 * 109.47431 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46861 * 300.00172 * 18 16 14 22 22 C 1.46506 * 119.99660 * 119.93146 * 13 12 11 23 23 C 1.52998 * 109.47124 * 84.22807 * 22 13 12 24 24 O 1.42896 * 109.47445 * 64.99836 * 23 22 13 25 25 C 1.53042 * 109.54127 * 61.23749 * 12 11 10 26 26 C 1.46923 * 120.63300 * 5.06672 * 9 7 6 27 27 N 1.35530 * 125.56569 * 179.97438 * 2 1 3 28 28 H 0.96997 * 125.67956 * 0.02839 * 27 2 1 29 29 H 1.08994 * 109.46937 * 90.03219 * 1 2 3 30 30 H 1.08999 * 109.46530 * 210.02732 * 1 2 3 31 31 H 1.09002 * 109.47152 * 330.02673 * 1 2 3 32 32 H 1.08002 * 126.07201 * 359.70922 * 3 2 1 33 33 H 1.08996 * 109.47328 * 90.02052 * 5 4 3 34 34 H 1.09003 * 109.47028 * 210.01655 * 5 4 3 35 35 H 1.09002 * 109.47111 * 330.01549 * 5 4 3 36 36 H 1.09006 * 109.58650 * 353.41781 * 10 9 7 37 37 H 1.08998 * 109.58301 * 113.83851 * 10 9 7 38 38 H 1.08992 * 109.56667 * 185.55257 * 11 10 9 39 39 H 1.08998 * 109.35602 * 65.49961 * 11 10 9 40 40 H 1.09009 * 109.46051 * 301.21463 * 12 11 10 41 41 H 0.97001 * 120.00442 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46793 * 204.22543 * 22 13 12 43 43 H 1.08997 * 109.47307 * 324.22107 * 22 13 12 44 44 H 1.09007 * 109.47083 * 184.99968 * 23 22 13 45 45 H 1.09000 * 109.46783 * 304.99536 * 23 22 13 46 46 H 0.96703 * 114.00127 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.49508 * 178.68517 * 25 12 11 48 48 H 1.08997 * 109.49347 * 58.58576 * 25 12 11 49 49 H 1.09000 * 109.58837 * 246.16041 * 26 9 7 50 50 H 1.08998 * 109.58505 * 6.44011 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 0.0006 5 6 4.8485 1.5593 0.0003 6 6 3.6122 -0.7018 0.0015 7 6 4.7861 -1.5814 0.0019 8 8 5.0967 -2.1817 -1.0100 9 7 5.5205 -1.7246 1.1229 10 6 6.7570 -2.5180 1.1114 11 6 6.6837 -3.5697 2.2169 12 6 6.3895 -2.8828 3.5525 13 7 6.3486 -3.8865 4.6189 14 6 5.4365 -4.9064 4.5646 15 1 4.4114 -4.7002 4.2946 16 6 5.8295 -6.2053 4.8567 17 7 7.0622 -6.4474 5.2492 18 14 4.6088 -7.6097 4.6927 19 1 4.1288 -7.6870 3.2896 20 1 5.2711 -8.8868 5.0609 21 1 3.4558 -7.3716 5.5978 22 6 7.2836 -3.7990 5.7434 23 6 6.7237 -2.8435 6.7990 24 8 5.5228 -3.3903 7.3475 25 6 5.0389 -2.1674 3.4737 26 6 5.0966 -1.0952 2.3810 27 7 2.2953 -1.1025 0.0005 28 1 1.9835 -2.0209 0.0005 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3632 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.9545 2.1269 -0.0044 33 1 5.1430 1.7725 1.0278 34 1 5.6642 1.0504 -0.5133 35 1 4.6219 2.4933 -0.5140 36 1 6.8653 -3.0120 0.1457 37 1 7.6118 -1.8651 1.2880 38 1 7.6346 -4.0984 2.2814 39 1 5.8876 -4.2784 1.9892 40 1 7.1733 -2.1564 3.7677 41 1 7.3368 -7.3550 5.4536 42 1 7.4172 -4.7877 6.1826 43 1 8.2445 -3.4262 5.3889 44 1 7.4578 -2.7093 7.5936 45 1 6.5068 -1.8798 6.3382 46 1 5.1117 -2.8359 8.0248 47 1 4.8193 -1.6980 4.4327 48 1 4.2583 -2.8894 3.2341 49 1 5.8132 -0.3239 2.6634 50 1 4.1108 -0.6485 2.2521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098406888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:10 Heat of formation + Delta-G solvation = -44.971906 kcal Electronic energy + Delta-G solvation = -30587.229440 eV Core-core repulsion = 26614.658672 eV Total energy + Delta-G solvation = -3972.570768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.44576 -40.73288 -39.00270 -37.62596 -36.23583 -34.08510 -33.61181 -32.61985 -31.91835 -31.88598 -29.46201 -28.58713 -27.61984 -26.25161 -24.76278 -24.07327 -22.57269 -21.80942 -21.34621 -20.94059 -19.89064 -18.83944 -18.12967 -17.97960 -17.61297 -16.81464 -16.45781 -16.06858 -16.02456 -15.56206 -15.49248 -15.10968 -14.88716 -14.62703 -14.45693 -14.12409 -14.08454 -13.95265 -13.85288 -13.64976 -13.55411 -13.40668 -13.09737 -13.06195 -12.91918 -12.85647 -12.71828 -12.63933 -12.40175 -12.31132 -12.10755 -11.84977 -11.58033 -11.51514 -11.20537 -11.10957 -10.56996 -10.43683 -9.73606 -9.66884 -8.87003 -8.33486 -7.67229 -5.42938 0.86170 1.26174 1.42674 1.42950 1.48078 1.83509 2.02894 2.51007 2.52032 3.37693 3.51439 3.62305 3.88258 3.94947 4.01191 4.14374 4.20793 4.20999 4.33083 4.36036 4.42157 4.61054 4.62164 4.64600 4.69573 4.78298 4.80839 4.81711 4.83808 4.91421 4.91542 4.97275 5.07424 5.10209 5.14106 5.16292 5.21749 5.22173 5.40170 5.44884 5.58207 5.61343 5.72702 5.97391 6.04897 6.06432 6.29264 6.53201 6.65115 6.97769 7.25688 7.33449 7.98501 8.48480 9.22823 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003490 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.454159 B = 8021.428628 C = 8327.553078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.042 3.958 3 C -0.211 4.211 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.069 4.069 7 C 0.588 3.412 8 O -0.585 6.585 9 N -0.586 5.586 10 C 0.120 3.880 11 C -0.122 4.122 12 C 0.176 3.824 13 N -0.586 5.586 14 C -0.220 4.220 15 H 0.039 0.961 16 C -0.030 4.030 17 N -0.921 5.921 18 Si 0.942 3.058 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.283 1.283 22 C 0.126 3.874 23 C 0.068 3.932 24 O -0.576 6.576 25 C -0.125 4.125 26 C 0.122 3.878 27 N -0.532 5.532 28 H 0.419 0.581 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.373 0.627 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.095 0.905 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 19.338 -5.343 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.235 4.235 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.182 4.182 7 C 0.376 3.624 8 O -0.466 6.466 9 N -0.317 5.317 10 C -0.002 4.002 11 C -0.162 4.162 12 C 0.069 3.931 13 N -0.306 5.306 14 C -0.351 4.351 15 H 0.057 0.943 16 C -0.226 4.226 17 N -0.567 5.567 18 Si 0.772 3.228 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.209 1.209 22 C 0.000 4.000 23 C -0.011 4.011 24 O -0.381 6.381 25 C -0.165 4.165 26 C 0.000 4.000 27 N -0.128 5.128 28 H 0.257 0.743 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.181 0.819 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.219 0.781 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.113 0.887 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.353 18.200 -6.218 20.591 hybrid contribution -0.648 -1.619 0.407 1.791 sum -8.001 16.581 -5.811 19.306 Atomic orbital electron populations 1.20498 0.85307 1.04657 1.03821 1.21057 0.95039 0.85424 1.05883 1.20773 0.91014 0.98925 1.12795 1.20092 0.96917 0.90075 1.05072 1.20259 0.92822 0.98169 1.02806 1.19710 0.83927 0.94182 1.20396 1.17545 0.82502 0.79662 0.82723 1.90777 1.72403 1.48944 1.34461 1.48130 1.24424 1.49771 1.09395 1.21583 0.85851 0.93420 0.99385 1.22042 1.00781 0.97398 0.95972 1.20498 0.95178 0.90298 0.87122 1.43797 1.38778 1.28126 1.19879 1.18706 0.89687 0.85918 1.40808 0.94336 1.25875 0.96611 0.99391 1.00722 1.69766 1.17943 1.18881 1.50112 0.85753 0.79397 0.80102 0.77596 1.21195 1.21895 1.20898 1.21276 0.90059 1.00838 0.87828 1.22906 0.85937 0.96462 0.95831 1.86781 1.41617 1.50634 1.59074 1.22168 0.99085 0.97147 0.98069 1.21843 1.01898 0.94865 0.81384 1.41847 1.04430 1.09370 1.57125 0.74343 0.89798 0.91066 0.88070 0.81942 0.90101 0.93718 0.89777 0.90920 0.88792 0.92532 0.94992 0.91199 0.94392 0.89717 0.94122 0.94046 0.94331 0.78121 0.90888 0.94678 0.88713 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.41 71.24 0.74 -0.22 16 2 C 0.04 0.81 7.13 41.34 0.29 1.10 16 3 C -0.21 -4.12 10.66 22.01 0.23 -3.88 16 4 C -0.11 -2.64 5.83 -19.57 -0.11 -2.75 16 5 C -0.08 -1.57 10.20 71.23 0.73 -0.84 16 6 C -0.07 -1.91 5.03 40.35 0.20 -1.71 16 7 C 0.59 19.64 7.19 86.45 0.62 20.26 16 8 O -0.59 -24.06 16.52 -4.31 -0.07 -24.13 16 9 N -0.59 -17.83 2.98 -824.45 -2.46 -20.29 16 10 C 0.12 3.82 6.41 86.22 0.55 4.38 16 11 C -0.12 -4.73 5.29 30.53 0.16 -4.57 16 12 C 0.18 6.62 2.59 45.02 0.12 6.74 16 13 N -0.59 -27.40 2.33 -677.86 -1.58 -28.98 16 14 C -0.22 -11.83 7.99 84.03 0.67 -11.16 16 15 H 0.04 2.16 6.92 -2.91 -0.02 2.14 16 16 C -0.03 -1.70 5.37 84.86 0.46 -1.25 16 17 N -0.92 -53.55 10.73 21.65 0.23 -53.32 16 18 Si 0.94 46.30 29.55 68.60 2.03 48.33 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 21 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 22 C 0.13 5.70 5.54 86.38 0.48 6.18 16 23 C 0.07 2.51 7.38 71.98 0.53 3.04 16 24 O -0.58 -23.12 13.41 -148.98 -2.00 -25.12 16 25 C -0.12 -4.13 5.29 30.67 0.16 -3.97 16 26 C 0.12 3.19 6.29 86.36 0.54 3.73 16 27 N -0.53 -12.64 6.10 -171.92 -1.05 -13.69 16 28 H 0.42 9.18 8.96 -92.71 -0.83 8.35 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.04 0.97 7.96 -2.39 -0.02 0.95 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 2.53 6.99 -2.38 -0.02 2.51 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.46 7.71 -2.39 -0.02 1.44 16 40 H 0.07 2.34 7.87 -2.38 -0.02 2.32 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.09 4.63 5.19 -2.39 -0.01 4.62 16 43 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 44 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.37 10.43 9.12 -74.06 -0.68 9.76 16 47 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 48 H 0.03 1.37 7.13 -2.39 -0.02 1.36 16 49 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.09 2.23 6.13 -2.39 -0.01 2.22 16 Total: -1.00 -73.61 399.51 0.94 -72.68 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.55 Total: 29.46 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.38 Total: 15.07 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -4.85 Total: -116.28 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -2.07 Total: -49.25 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.61 0.94 -72.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098406888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.705 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds