Wall clock time and date at job start Tue Mar 31 2020 19:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.57656 * 2 1 4 4 C 1.46679 * 106.33400 * 179.97438 * 3 2 1 5 5 C 1.47268 * 126.94005 * 180.02562 * 4 3 2 6 6 O 1.21626 * 119.99892 * 214.40436 * 5 4 3 7 7 N 1.34777 * 120.00277 * 34.40253 * 5 4 3 8 8 C 1.46921 * 120.62895 * 184.80502 * 7 5 4 9 9 C 1.52767 * 109.00671 * 233.58140 * 8 7 5 10 10 C 1.53031 * 109.38480 * 305.59138 * 9 8 7 11 11 N 1.46507 * 109.46272 * 181.25847 * 10 9 8 12 12 C 1.36933 * 119.99841 * 303.33033 * 11 10 9 13 13 H 1.07999 * 119.99863 * 324.55999 * 12 11 10 14 14 C 1.38812 * 120.00122 * 144.56313 * 12 11 10 15 15 N 1.31622 * 119.99770 * 157.30452 * 14 12 11 16 16 Si 1.86802 * 119.99955 * 337.29824 * 14 12 11 17 17 H 1.48499 * 109.46812 * 95.34272 * 16 14 12 18 18 H 1.48499 * 109.47188 * 215.34452 * 16 14 12 19 19 H 1.48498 * 109.47030 * 335.34527 * 16 14 12 20 20 C 1.46496 * 120.00057 * 123.32538 * 11 10 9 21 21 C 1.52997 * 109.47306 * 90.00300 * 20 11 10 22 22 O 1.42897 * 109.46848 * 64.99862 * 21 20 11 23 23 C 1.53042 * 109.53980 * 61.23978 * 10 9 8 24 24 C 1.46927 * 120.62842 * 5.08635 * 7 5 4 25 25 C 1.36763 * 106.11698 * 0.25682 * 4 3 2 26 26 C 1.50705 * 125.80314 * 179.74077 * 25 4 3 27 27 N 1.34657 * 108.39609 * 359.57600 * 25 4 3 28 28 H 0.97003 * 124.85106 * 180.14444 * 27 25 4 29 29 H 1.08999 * 109.47064 * 89.99785 * 1 2 3 30 30 H 1.08996 * 109.47226 * 210.00575 * 1 2 3 31 31 H 1.09003 * 109.46888 * 330.00678 * 1 2 3 32 32 H 1.08000 * 126.82963 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.59175 * 353.41863 * 8 7 5 34 34 H 1.08997 * 109.58987 * 113.85011 * 8 7 5 35 35 H 1.09000 * 109.56222 * 185.55179 * 9 8 7 36 36 H 1.09004 * 109.35757 * 65.50531 * 9 8 7 37 37 H 1.09000 * 109.46622 * 301.21763 * 10 9 8 38 38 H 0.97007 * 119.99449 * 180.02562 * 15 14 12 39 39 H 1.09007 * 109.47057 * 210.00726 * 20 11 10 40 40 H 1.09000 * 109.46989 * 329.99926 * 20 11 10 41 41 H 1.08998 * 109.47355 * 184.99909 * 21 20 11 42 42 H 1.09003 * 109.46853 * 304.99803 * 21 20 11 43 43 H 0.96710 * 113.99768 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.49892 * 178.68531 * 23 10 9 45 45 H 1.09006 * 109.49734 * 58.58597 * 23 10 9 46 46 H 1.08997 * 109.58398 * 246.15508 * 24 7 5 47 47 H 1.09003 * 109.58499 * 6.43843 * 24 7 5 48 48 H 1.09002 * 109.46624 * 89.99883 * 26 25 4 49 49 H 1.09000 * 109.47145 * 209.99712 * 26 25 4 50 50 H 1.08997 * 109.47333 * 330.00375 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6742 0.6104 0.0006 5 6 4.8978 1.4300 0.0014 6 8 5.8870 1.0465 -0.5933 7 7 4.9214 2.6051 0.6610 8 6 6.0971 3.4828 0.5847 9 6 6.5626 3.8153 2.0013 10 6 5.3926 4.3989 2.7965 11 7 5.8447 4.7462 4.1461 12 6 6.4157 3.7910 4.9439 13 1 6.0638 2.7708 4.9010 14 6 7.4467 4.1339 5.8078 15 7 7.6972 3.3872 6.8625 16 14 8.4785 5.6547 5.4736 17 1 7.9353 6.8009 6.2459 18 1 9.8824 5.4008 5.8858 19 1 8.4380 5.9714 4.0233 20 6 5.6859 6.1156 4.6420 21 6 4.3302 6.2520 5.3379 22 8 4.3068 5.4233 6.5018 23 6 4.2680 3.3647 2.8860 24 6 3.7743 3.0297 1.4751 25 6 3.5997 -0.7552 -0.0049 26 6 4.7721 -1.7021 -0.0121 27 7 2.3007 -1.1099 0.0007 28 1 1.9756 -2.0238 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.9630 2.1233 -0.0004 33 1 6.8983 2.9747 0.0481 34 1 5.8327 4.4035 0.0646 35 1 7.3723 4.5437 1.9579 36 1 6.9160 2.9063 2.4881 37 1 5.0236 5.2940 2.2958 38 1 8.4175 3.6271 7.4664 39 1 6.4827 6.3398 5.3513 40 1 5.7370 6.8130 3.8059 41 1 4.1738 7.2909 5.6284 42 1 3.5387 5.9425 4.6554 43 1 3.4750 5.4596 6.9938 44 1 3.4446 3.7724 3.4723 45 1 4.6431 2.4599 3.3646 46 1 3.3166 3.9126 1.0289 47 1 3.0423 2.2235 1.5235 48 1 5.0574 -1.9347 1.0139 49 1 4.4941 -2.6206 -0.5290 50 1 5.6126 -1.2359 -0.5261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098489277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:46 Heat of formation + Delta-G solvation = -7.926562 kcal Electronic energy + Delta-G solvation = -30547.289891 eV Core-core repulsion = 26576.325530 eV Total energy + Delta-G solvation = -3970.964361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.44528 -39.39317 -37.51459 -36.16883 -34.62092 -32.75490 -32.15607 -31.47290 -30.63724 -30.15969 -29.27202 -27.85640 -25.56719 -24.40834 -23.13687 -22.98852 -21.73968 -20.82188 -20.49674 -19.50318 -18.13443 -17.12024 -16.68590 -16.34523 -15.86050 -15.45735 -15.19640 -15.18284 -14.62271 -14.45825 -13.89887 -13.70748 -13.59286 -13.39876 -13.39300 -13.27579 -12.98406 -12.82462 -12.63595 -12.50115 -12.37067 -12.21897 -12.17632 -11.86314 -11.64558 -11.57444 -11.46756 -11.04517 -10.66715 -10.58705 -10.45690 -10.16273 -9.86233 -9.61552 -9.49859 -9.41808 -9.03223 -8.75411 -8.35408 -8.20853 -8.00644 -6.72714 -5.79064 -3.17041 1.89082 2.31730 2.98556 3.39274 3.41077 3.55867 3.58501 3.66239 4.64252 4.67766 4.78937 4.86699 4.97247 5.04474 5.14411 5.16824 5.27276 5.35157 5.46398 5.50861 5.57218 5.58524 5.60446 5.65505 5.78327 5.79881 5.83408 5.92435 5.93814 5.97885 6.01214 6.15400 6.17007 6.25593 6.26951 6.28636 6.40304 6.58382 6.67554 6.74743 6.77837 6.90085 6.98206 7.13102 7.16955 7.36973 7.83100 8.19556 8.49433 8.57232 8.59412 9.13261 9.91300 10.25958 11.37612 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003414 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.315803 B = 8200.226875 C = 8816.210162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 C -0.164 4.164 4 C -0.221 4.221 5 C 0.593 3.407 6 O -0.558 6.558 7 N -0.598 5.598 8 C 0.115 3.885 9 C -0.138 4.138 10 C 0.180 3.820 11 N -0.594 5.594 12 C -0.241 4.241 13 H 0.076 0.924 14 C 0.041 3.959 15 N -0.901 5.901 16 Si 0.872 3.128 17 H -0.290 1.290 18 H -0.306 1.306 19 H -0.272 1.272 20 C 0.132 3.868 21 C 0.062 3.938 22 O -0.533 6.533 23 C -0.138 4.138 24 C 0.101 3.899 25 C 0.097 3.903 26 C -0.099 4.099 27 N -0.551 5.551 28 H 0.412 0.588 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.258 0.742 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.020 0.980 42 H 0.031 0.969 43 H 0.352 0.648 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.693 -4.081 -13.901 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.189 4.189 4 C -0.231 4.231 5 C 0.382 3.618 6 O -0.438 6.438 7 N -0.330 5.330 8 C -0.008 4.008 9 C -0.178 4.178 10 C 0.073 3.927 11 N -0.315 5.315 12 C -0.370 4.370 13 H 0.093 0.907 14 C -0.158 4.158 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.218 1.218 18 H -0.234 1.234 19 H -0.197 1.197 20 C 0.006 3.994 21 C -0.018 4.018 22 O -0.334 6.334 23 C -0.178 4.178 24 C -0.022 4.022 25 C -0.020 4.020 26 C -0.156 4.156 27 N -0.148 5.148 28 H 0.248 0.752 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.195 0.805 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.489 -4.542 -14.269 20.836 hybrid contribution -0.222 0.796 0.337 0.892 sum -14.710 -3.745 -13.932 20.604 Atomic orbital electron populations 1.20310 0.87852 1.03359 1.02528 1.20190 0.93372 0.86038 1.10577 1.21835 0.90623 0.97698 1.08694 1.20086 0.93189 0.92194 1.17649 1.17394 0.86302 0.80048 0.78007 1.90701 1.35840 1.71275 1.45955 1.47889 1.17814 1.19571 1.47738 1.21575 0.87990 0.92817 0.98423 1.22224 0.99395 1.02781 0.93379 1.20326 0.92168 0.94516 0.85702 1.44116 1.70363 1.06528 1.10490 1.18467 1.11257 0.91477 1.15769 0.90694 1.25265 0.97489 0.96483 0.96575 1.69884 1.31745 1.40475 1.12163 0.87024 0.79812 0.84173 0.78582 1.21839 1.23438 1.19722 1.21335 0.94801 0.87304 0.95957 1.22891 1.00014 0.91151 0.87774 1.86971 1.38603 1.68235 1.39590 1.22346 0.99503 1.01758 0.94223 1.22134 0.88368 1.00179 0.91524 1.20200 0.84803 0.94134 1.02822 1.20578 0.94922 0.96675 1.03445 1.41469 1.05297 1.08618 1.59381 0.75166 0.91170 0.91838 0.89969 0.83579 0.89560 0.92387 0.91433 0.90428 0.93324 0.93189 0.92184 0.93108 0.96153 0.95061 0.80522 0.91599 0.91009 0.92419 0.88754 0.90508 0.91750 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.41 36.01 0.37 -0.14 16 2 C 0.01 0.07 7.13 -81.87 -0.58 -0.51 16 3 C -0.16 -1.94 8.51 -37.50 -0.32 -2.26 16 4 C -0.22 -3.22 5.51 -103.35 -0.57 -3.79 16 5 C 0.59 10.18 7.51 -12.59 -0.09 10.08 16 6 O -0.56 -10.98 14.81 5.25 0.08 -10.90 16 7 N -0.60 -9.66 2.98 -174.36 -0.52 -10.18 16 8 C 0.11 1.87 6.41 -3.93 -0.03 1.85 16 9 C -0.14 -2.62 5.23 -26.83 -0.14 -2.76 16 10 C 0.18 3.40 2.60 -67.89 -0.18 3.23 16 11 N -0.59 -13.60 2.04 -165.62 -0.34 -13.94 16 12 C -0.24 -6.65 8.13 -15.06 -0.12 -6.78 16 13 H 0.08 2.29 7.15 -52.49 -0.38 1.91 16 14 C 0.04 1.21 5.31 -17.43 -0.09 1.12 16 15 N -0.90 -28.27 13.97 55.49 0.78 -27.50 16 16 Si 0.87 22.76 24.97 -169.99 -4.24 18.51 16 17 H -0.29 -7.46 6.66 56.52 0.38 -7.09 16 18 H -0.31 -8.18 7.11 56.52 0.40 -7.78 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.13 2.83 4.92 -4.05 -0.02 2.81 16 21 C 0.06 1.16 7.39 37.16 0.27 1.44 16 22 O -0.53 -11.35 13.13 -35.23 -0.46 -11.81 16 23 C -0.14 -2.40 5.36 -26.61 -0.14 -2.54 16 24 C 0.10 1.44 5.42 -3.71 -0.02 1.42 16 25 C 0.10 1.21 7.17 -81.88 -0.59 0.63 16 26 C -0.10 -1.10 10.20 36.01 0.37 -0.73 16 27 N -0.55 -5.23 5.90 -5.42 -0.03 -5.26 16 28 H 0.41 2.54 8.96 -40.82 -0.37 2.17 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.15 1.52 7.03 -52.49 -0.37 1.15 16 33 H 0.09 1.49 6.99 -51.93 -0.36 1.12 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.71 7.64 -51.93 -0.40 1.32 16 37 H 0.05 0.83 7.77 -51.93 -0.40 0.42 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.06 1.47 3.00 -51.93 -0.16 1.31 16 40 H 0.05 0.94 7.89 -51.93 -0.41 0.53 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.35 5.48 9.12 45.56 0.42 5.90 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.48 7.17 -51.93 -0.37 1.11 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.27 4.37 -51.93 -0.23 1.04 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 1.36 6.51 -51.93 -0.34 1.03 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -36.39 387.38 -7.95 -44.35 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.17 Total: 7.84 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.88 Total: 3.05 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.11 Total: -56.88 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.38 Total: -22.71 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.24 Total: 18.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.39 -7.95 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098489277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.422 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds