Wall clock time and date at job start Tue Mar 31 2020 19:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.57656 * 2 1 4 4 C 1.46679 * 106.33400 * 179.97438 * 3 2 1 5 5 C 1.47268 * 126.94005 * 180.02562 * 4 3 2 6 6 O 1.21626 * 119.99892 * 214.40436 * 5 4 3 7 7 N 1.34777 * 120.00277 * 34.40253 * 5 4 3 8 8 C 1.46921 * 120.62895 * 184.80502 * 7 5 4 9 9 C 1.52767 * 109.00671 * 233.58140 * 8 7 5 10 10 C 1.53031 * 109.38480 * 305.59138 * 9 8 7 11 11 N 1.46507 * 109.46272 * 181.25847 * 10 9 8 12 12 C 1.36933 * 119.99841 * 303.33033 * 11 10 9 13 13 H 1.07999 * 119.99863 * 324.55999 * 12 11 10 14 14 C 1.38812 * 120.00122 * 144.56313 * 12 11 10 15 15 N 1.31622 * 119.99770 * 157.30452 * 14 12 11 16 16 Si 1.86802 * 119.99955 * 337.29824 * 14 12 11 17 17 H 1.48499 * 109.46812 * 95.34272 * 16 14 12 18 18 H 1.48499 * 109.47188 * 215.34452 * 16 14 12 19 19 H 1.48498 * 109.47030 * 335.34527 * 16 14 12 20 20 C 1.46496 * 120.00057 * 123.32538 * 11 10 9 21 21 C 1.52997 * 109.47306 * 90.00300 * 20 11 10 22 22 O 1.42897 * 109.46848 * 64.99862 * 21 20 11 23 23 C 1.53042 * 109.53980 * 61.23978 * 10 9 8 24 24 C 1.46927 * 120.62842 * 5.08635 * 7 5 4 25 25 C 1.36763 * 106.11698 * 0.25682 * 4 3 2 26 26 C 1.50705 * 125.80314 * 179.74077 * 25 4 3 27 27 N 1.34657 * 108.39609 * 359.57600 * 25 4 3 28 28 H 0.97003 * 124.85106 * 180.14444 * 27 25 4 29 29 H 1.08999 * 109.47064 * 89.99785 * 1 2 3 30 30 H 1.08996 * 109.47226 * 210.00575 * 1 2 3 31 31 H 1.09003 * 109.46888 * 330.00678 * 1 2 3 32 32 H 1.08000 * 126.82963 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.59175 * 353.41863 * 8 7 5 34 34 H 1.08997 * 109.58987 * 113.85011 * 8 7 5 35 35 H 1.09000 * 109.56222 * 185.55179 * 9 8 7 36 36 H 1.09004 * 109.35757 * 65.50531 * 9 8 7 37 37 H 1.09000 * 109.46622 * 301.21763 * 10 9 8 38 38 H 0.97007 * 119.99449 * 180.02562 * 15 14 12 39 39 H 1.09007 * 109.47057 * 210.00726 * 20 11 10 40 40 H 1.09000 * 109.46989 * 329.99926 * 20 11 10 41 41 H 1.08998 * 109.47355 * 184.99909 * 21 20 11 42 42 H 1.09003 * 109.46853 * 304.99803 * 21 20 11 43 43 H 0.96710 * 113.99768 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.49892 * 178.68531 * 23 10 9 45 45 H 1.09006 * 109.49734 * 58.58597 * 23 10 9 46 46 H 1.08997 * 109.58398 * 246.15508 * 24 7 5 47 47 H 1.09003 * 109.58499 * 6.43843 * 24 7 5 48 48 H 1.09002 * 109.46624 * 89.99883 * 26 25 4 49 49 H 1.09000 * 109.47145 * 209.99712 * 26 25 4 50 50 H 1.08997 * 109.47333 * 330.00375 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6742 0.6104 0.0006 5 6 4.8978 1.4300 0.0014 6 8 5.8870 1.0465 -0.5933 7 7 4.9214 2.6051 0.6610 8 6 6.0971 3.4828 0.5847 9 6 6.5626 3.8153 2.0013 10 6 5.3926 4.3989 2.7965 11 7 5.8447 4.7462 4.1461 12 6 6.4157 3.7910 4.9439 13 1 6.0638 2.7708 4.9010 14 6 7.4467 4.1339 5.8078 15 7 7.6972 3.3872 6.8625 16 14 8.4785 5.6547 5.4736 17 1 7.9353 6.8009 6.2459 18 1 9.8824 5.4008 5.8858 19 1 8.4380 5.9714 4.0233 20 6 5.6859 6.1156 4.6420 21 6 4.3302 6.2520 5.3379 22 8 4.3068 5.4233 6.5018 23 6 4.2680 3.3647 2.8860 24 6 3.7743 3.0297 1.4751 25 6 3.5997 -0.7552 -0.0049 26 6 4.7721 -1.7021 -0.0121 27 7 2.3007 -1.1099 0.0007 28 1 1.9756 -2.0238 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.9630 2.1233 -0.0004 33 1 6.8983 2.9747 0.0481 34 1 5.8327 4.4035 0.0646 35 1 7.3723 4.5437 1.9579 36 1 6.9160 2.9063 2.4881 37 1 5.0236 5.2940 2.2958 38 1 8.4175 3.6271 7.4664 39 1 6.4827 6.3398 5.3513 40 1 5.7370 6.8130 3.8059 41 1 4.1738 7.2909 5.6284 42 1 3.5387 5.9425 4.6554 43 1 3.4750 5.4596 6.9938 44 1 3.4446 3.7724 3.4723 45 1 4.6431 2.4599 3.3646 46 1 3.3166 3.9126 1.0289 47 1 3.0423 2.2235 1.5235 48 1 5.0574 -1.9347 1.0139 49 1 4.4941 -2.6206 -0.5290 50 1 5.6126 -1.2359 -0.5261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098489277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:44 Heat of formation + Delta-G solvation = -35.817930 kcal Electronic energy + Delta-G solvation = -30548.499351 eV Core-core repulsion = 26576.325530 eV Total energy + Delta-G solvation = -3972.173822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34650 -40.68890 -39.06532 -37.65864 -36.25214 -33.90891 -33.52089 -33.00204 -32.13942 -31.32197 -30.00010 -29.54179 -26.97625 -25.71692 -24.57391 -24.33106 -23.06741 -22.31971 -21.36429 -21.04381 -19.42205 -18.33221 -18.27687 -17.91746 -17.23404 -16.95855 -16.62630 -16.30623 -16.20329 -15.54093 -15.38446 -15.08967 -14.81638 -14.68793 -14.54781 -14.48325 -14.19393 -14.12802 -14.05856 -13.81988 -13.51877 -13.42269 -13.18239 -13.09128 -12.96162 -12.85676 -12.77496 -12.45076 -12.41384 -12.16839 -12.08842 -11.81590 -11.71944 -11.32936 -11.16994 -10.82318 -10.61479 -10.43448 -9.73510 -9.48195 -8.89870 -8.65453 -8.03995 -5.36417 0.84984 1.31488 1.42221 1.48112 1.51314 2.00827 2.35435 2.50210 2.52017 3.13358 3.37944 3.77369 3.79005 3.90234 4.01165 4.12858 4.23592 4.25802 4.28916 4.38745 4.46207 4.49320 4.53135 4.57805 4.64682 4.66161 4.68774 4.70849 4.79622 4.82884 4.87080 4.91456 4.93678 4.96429 5.05365 5.07554 5.18132 5.18811 5.21191 5.32731 5.48028 5.58967 5.72084 5.86251 6.04973 6.07850 6.30559 6.55839 6.68901 7.11481 7.25561 7.31277 7.80800 8.16866 9.17682 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003414 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.315803 B = 8200.226875 C = 8816.210162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 C -0.182 4.182 4 C -0.259 4.259 5 C 0.584 3.416 6 O -0.596 6.596 7 N -0.602 5.602 8 C 0.122 3.878 9 C -0.130 4.130 10 C 0.175 3.825 11 N -0.604 5.604 12 C -0.206 4.206 13 H 0.028 0.972 14 C -0.023 4.023 15 N -0.958 5.958 16 Si 0.938 3.062 17 H -0.282 1.282 18 H -0.322 1.322 19 H -0.253 1.253 20 C 0.118 3.882 21 C 0.064 3.936 22 O -0.576 6.576 23 C -0.127 4.127 24 C 0.111 3.889 25 C 0.087 3.913 26 C -0.096 4.096 27 N -0.537 5.537 28 H 0.429 0.571 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.375 0.625 44 H 0.075 0.925 45 H 0.023 0.977 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.292 -2.243 -16.073 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.269 4.269 5 C 0.375 3.625 6 O -0.479 6.479 7 N -0.333 5.333 8 C -0.001 4.001 9 C -0.170 4.170 10 C 0.069 3.931 11 N -0.325 5.325 12 C -0.336 4.336 13 H 0.046 0.954 14 C -0.218 4.218 15 N -0.604 5.604 16 Si 0.769 3.231 17 H -0.210 1.210 18 H -0.252 1.252 19 H -0.177 1.177 20 C -0.007 4.007 21 C -0.016 4.016 22 O -0.381 6.381 23 C -0.167 4.167 24 C -0.012 4.012 25 C -0.031 4.031 26 C -0.153 4.153 27 N -0.135 5.135 28 H 0.269 0.731 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.179 0.821 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.221 0.779 44 H 0.094 0.906 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.092 0.908 49 H 0.115 0.885 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.165 -2.674 -16.472 24.666 hybrid contribution 0.765 0.129 0.978 1.248 sum -17.400 -2.544 -15.494 23.437 Atomic orbital electron populations 1.20447 0.84836 1.04691 1.03859 1.20778 0.95019 0.85287 1.07804 1.22021 0.89321 0.99177 1.10062 1.20138 0.93426 0.93054 1.20242 1.17922 0.86855 0.80206 0.77490 1.90667 1.37480 1.72052 1.47713 1.48005 1.18152 1.19441 1.47705 1.21473 0.88072 0.94106 0.96432 1.22104 0.99560 1.00396 0.94910 1.20593 0.92196 0.96429 0.83848 1.44226 1.70198 1.06451 1.11658 1.18182 1.09941 0.90694 1.14809 0.95407 1.25846 0.99203 0.99935 0.96770 1.70034 1.33000 1.43393 1.13968 0.85959 0.76991 0.80891 0.79287 1.21032 1.25178 1.17728 1.21560 0.95548 0.86580 0.97032 1.22866 0.98704 0.92682 0.87307 1.86899 1.40869 1.69362 1.41006 1.22184 0.99065 0.99151 0.96267 1.22208 0.87697 1.02097 0.89169 1.20316 0.86229 0.93858 1.02708 1.20520 0.93891 0.97660 1.03272 1.41479 1.04191 1.09787 1.58013 0.73119 0.89714 0.90247 0.88941 0.82127 0.91149 0.88840 0.91803 0.95212 0.89283 0.93803 0.95270 0.89187 0.92803 0.92738 0.77910 0.90637 0.95783 0.88622 0.87688 0.90850 0.88506 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.41 71.24 0.74 0.08 16 2 C 0.02 0.35 7.13 40.98 0.29 0.64 16 3 C -0.18 -3.90 8.51 23.62 0.20 -3.70 16 4 C -0.26 -7.42 5.51 -19.04 -0.10 -7.52 16 5 C 0.58 20.40 7.51 86.62 0.65 21.05 16 6 O -0.60 -24.59 14.81 -4.11 -0.06 -24.66 16 7 N -0.60 -19.05 2.98 -823.79 -2.45 -21.50 16 8 C 0.12 3.89 6.41 86.22 0.55 4.45 16 9 C -0.13 -4.94 5.23 30.53 0.16 -4.78 16 10 C 0.18 6.31 2.60 45.01 0.12 6.42 16 11 N -0.60 -27.10 2.04 -677.90 -1.38 -28.48 16 12 C -0.21 -11.77 8.13 84.03 0.68 -11.09 16 13 H 0.03 1.84 7.15 -2.91 -0.02 1.82 16 14 C -0.02 -1.41 5.31 84.86 0.45 -0.96 16 15 N -0.96 -63.30 13.97 21.65 0.30 -63.00 16 16 Si 0.94 48.34 24.97 68.60 1.71 50.06 16 17 H -0.28 -14.04 6.66 99.48 0.66 -13.38 16 18 H -0.32 -17.23 7.11 99.48 0.71 -16.52 16 19 H -0.25 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.12 4.69 4.92 86.38 0.42 5.12 16 21 C 0.06 2.16 7.39 71.98 0.53 2.69 16 22 O -0.58 -23.81 13.13 -148.98 -1.96 -25.77 16 23 C -0.13 -4.27 5.36 30.67 0.16 -4.11 16 24 C 0.11 2.89 5.42 86.36 0.47 3.35 16 25 C 0.09 2.13 7.17 41.78 0.30 2.43 16 26 C -0.10 -2.17 10.20 71.24 0.73 -1.45 16 27 N -0.54 -8.97 5.90 -171.07 -1.01 -9.98 16 28 H 0.43 4.06 8.96 -92.71 -0.83 3.23 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.16 2.80 7.03 -2.91 -0.02 2.78 16 33 H 0.07 2.48 6.99 -2.39 -0.02 2.46 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 1.38 7.64 -2.39 -0.02 1.37 16 37 H 0.09 2.58 7.77 -2.39 -0.02 2.56 16 38 H 0.25 16.08 8.31 -92.70 -0.77 15.31 16 39 H 0.03 1.37 3.00 -2.38 -0.01 1.36 16 40 H 0.09 2.87 7.89 -2.39 -0.02 2.85 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.37 11.10 9.12 -74.05 -0.68 10.42 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.02 1.02 7.17 -2.38 -0.02 1.00 16 46 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.11 2.59 4.37 -2.39 -0.01 2.58 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 2.11 6.51 -2.39 -0.02 2.09 16 Total: -1.00 -86.39 387.38 0.94 -85.45 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.58 Total: 25.25 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.36 Total: 12.63 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -4.54 Total: -122.96 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -2.02 Total: -50.43 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.71 Total: 50.06 kcal Total: -86.39 0.94 -85.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098489277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.637 kcal (2) G-P(sol) polarization free energy of solvation -86.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds