Wall clock time and date at job start Tue Mar 31 2020 18:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.49549 * 2 1 4 4 C 1.53045 * 109.46781 * 239.92368 * 2 1 3 5 5 C 1.53035 * 109.53903 * 301.36503 * 4 2 1 6 6 C 1.53197 * 109.33809 * 298.68349 * 5 4 2 7 7 H 1.08994 * 109.58742 * 294.83191 * 6 5 4 8 8 C 1.53002 * 109.58625 * 174.40769 * 6 5 4 9 9 N 1.46497 * 109.46998 * 179.89901 * 8 6 5 10 10 C 1.34772 * 120.00004 * 180.02562 * 9 8 6 11 11 O 1.21286 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00155 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46990 * 179.97438 * 13 12 10 15 15 C 1.41378 * 126.80013 * 124.70906 * 14 13 12 16 16 C 1.35453 * 103.98397 * 179.88790 * 15 14 13 17 17 O 1.34035 * 106.44691 * 0.36950 * 16 15 14 18 18 N 1.20926 * 111.56457 * 359.74600 * 17 16 15 19 19 N 1.46927 * 108.77197 * 54.61999 * 6 5 4 20 20 C 1.36943 * 120.62875 * 126.41512 * 19 6 5 21 21 H 1.07999 * 119.99829 * 328.29755 * 20 19 6 22 22 C 1.38811 * 119.99804 * 148.29800 * 20 19 6 23 23 N 1.31614 * 120.00532 * 345.42016 * 22 20 19 24 24 Si 1.86808 * 119.99655 * 165.41593 * 22 20 19 25 25 H 1.48504 * 109.46889 * 60.00335 * 24 22 20 26 26 H 1.48495 * 109.46976 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46869 * 300.00096 * 24 22 20 28 28 C 1.46922 * 118.73929 * 306.38768 * 19 6 5 29 29 H 1.08997 * 109.46888 * 299.93586 * 1 2 3 30 30 H 1.09001 * 109.47460 * 59.93265 * 1 2 3 31 31 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46514 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47092 * 300.06641 * 3 2 1 34 34 H 1.09002 * 109.46814 * 60.06938 * 3 2 1 35 35 H 1.08995 * 109.43126 * 181.35601 * 4 2 1 36 36 H 1.09005 * 109.48487 * 61.40301 * 4 2 1 37 37 H 1.08998 * 109.49920 * 178.71871 * 5 4 2 38 38 H 1.08997 * 109.49927 * 58.65386 * 5 4 2 39 39 H 1.09005 * 109.46895 * 299.89584 * 8 6 5 40 40 H 1.08996 * 109.47205 * 59.89549 * 8 6 5 41 41 H 0.96999 * 120.00337 * 359.97438 * 9 8 6 42 42 H 1.08996 * 109.46873 * 299.99117 * 12 10 9 43 43 H 1.08996 * 109.47224 * 59.99255 * 12 10 9 44 44 H 1.08996 * 109.46974 * 299.99620 * 13 12 10 45 45 H 1.08996 * 109.47205 * 59.99809 * 13 12 10 46 46 H 1.08004 * 128.00835 * 0.02881 * 15 14 13 47 47 H 1.07999 * 126.77519 * 180.09607 * 16 15 14 48 48 H 0.96992 * 120.00465 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.58693 * 173.39553 * 28 19 6 50 50 H 1.08993 * 109.59193 * 293.68008 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0401 -0.7231 -1.2487 5 6 1.5029 -2.1560 -1.2656 6 6 2.0140 -2.9040 -0.0302 7 1 3.0978 -3.0043 -0.0862 8 6 1.3702 -4.2906 0.0326 9 7 1.8625 -5.0045 1.2134 10 6 1.4298 -6.2538 1.4745 11 8 0.6325 -6.7870 0.7321 12 6 1.9365 -6.9884 2.6888 13 6 1.2927 -8.3750 2.7517 14 6 1.8000 -9.1098 3.9657 15 6 1.0198 -9.6829 4.9961 16 6 1.9343 -10.2196 5.8391 17 8 3.1379 -9.9525 5.3132 18 7 3.0434 -9.3376 4.2763 19 7 1.6515 -2.1378 1.1700 20 6 0.9639 -2.7309 2.1951 21 1 0.2593 -3.5222 1.9860 22 6 1.1726 -2.3149 3.5028 23 7 2.2162 -1.5692 3.7977 24 14 -0.0281 -2.8134 4.8443 25 1 -0.0742 -4.2945 4.9419 26 1 0.4159 -2.2448 6.1422 27 1 -1.3808 -2.2966 4.5148 28 6 2.0414 -0.7235 1.2496 29 1 -0.3633 0.5128 0.8905 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1306 1.4417 -0.0005 33 1 1.6765 1.9566 -0.8894 34 1 1.6785 1.9559 0.8906 35 1 3.1297 -0.7439 -1.2360 36 1 1.6975 -0.1963 -2.1393 37 1 1.8479 -2.6633 -2.1665 38 1 0.4132 -2.1362 -1.2540 39 1 0.2871 -4.1857 0.0967 40 1 1.6284 -4.8520 -0.8652 41 1 2.5004 -4.5782 1.8069 42 1 3.0195 -7.0930 2.6244 43 1 1.6785 -6.4272 3.5869 44 1 0.2097 -8.2700 2.8163 45 1 1.5505 -8.9363 1.8537 46 1 -0.0562 -9.6928 5.0884 47 1 1.7333 -10.7530 6.7564 48 1 2.3618 -1.2783 4.7114 49 1 1.6007 -0.2725 2.1389 50 1 3.1273 -0.6461 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099139790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:36 Heat of formation + Delta-G solvation = 29.143542 kcal Electronic energy + Delta-G solvation = -30179.439299 eV Core-core repulsion = 26210.082418 eV Total energy + Delta-G solvation = -3969.356881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.96373 -39.37051 -38.44337 -35.45448 -34.89611 -33.19106 -32.29772 -31.99627 -31.04068 -30.01592 -27.64228 -26.61723 -25.49756 -25.25721 -23.19953 -23.07913 -22.23580 -20.79773 -20.10894 -19.47859 -17.91938 -17.88090 -17.56899 -16.78598 -16.00571 -15.67764 -15.31969 -15.10925 -14.72089 -14.19565 -13.94878 -13.84322 -13.53545 -13.44118 -13.31777 -13.11275 -12.85758 -12.61429 -12.23095 -12.15874 -12.03783 -11.70351 -11.53401 -11.36321 -11.29138 -11.15491 -10.92467 -10.84468 -10.77860 -10.62360 -10.43281 -10.13177 -10.09314 -10.06368 -9.80813 -9.70105 -9.48481 -9.34606 -9.16851 -8.58220 -8.20453 -6.65019 -5.86013 -3.32128 1.45038 2.19605 3.20506 3.23466 3.30260 3.37323 3.39899 3.83834 4.20116 4.40497 4.54384 5.06105 5.14850 5.18307 5.24311 5.28285 5.33473 5.44247 5.44689 5.49807 5.59373 5.64251 5.75835 5.78795 5.90095 5.95570 6.02857 6.08848 6.13052 6.17409 6.21562 6.23884 6.33292 6.37170 6.45404 6.47234 6.48070 6.52745 6.65247 6.89899 6.94155 7.01977 7.11557 7.21299 7.36859 7.63545 7.77576 8.24066 8.28264 8.39506 8.88541 9.14637 9.76261 10.35224 11.20762 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003206 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.564107 B = 8730.528404 C = 9786.612348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.031 0.969 8 C 0.135 3.865 9 N -0.692 5.692 10 C 0.510 3.490 11 O -0.569 6.569 12 C -0.136 4.136 13 C -0.024 4.024 14 C 0.022 3.978 15 C -0.231 4.231 16 C -0.065 4.065 17 O 0.097 5.903 18 N -0.363 5.363 19 N -0.584 5.584 20 C -0.249 4.249 21 H 0.068 0.932 22 C 0.010 3.990 23 N -0.898 5.898 24 Si 0.890 3.110 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.188 3.812 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.415 0.585 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.171 0.829 47 H 0.215 0.785 48 H 0.254 0.746 49 H 0.083 0.917 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -8.085 -1.038 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.048 0.952 8 C 0.011 3.989 9 N -0.343 5.343 10 C 0.296 3.704 11 O -0.450 6.450 12 C -0.177 4.177 13 C -0.062 4.062 14 C -0.137 4.137 15 C -0.252 4.252 16 C -0.147 4.147 17 O 0.030 5.970 18 N -0.067 5.067 19 N -0.308 5.308 20 C -0.379 4.379 21 H 0.086 0.914 22 C -0.189 4.189 23 N -0.541 5.541 24 Si 0.720 3.280 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.062 3.938 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.253 0.747 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.189 0.811 47 H 0.231 0.769 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.480 -8.081 -1.958 8.329 hybrid contribution -1.272 0.047 1.501 1.968 sum -0.792 -8.034 -0.457 8.086 Atomic orbital electron populations 1.21700 0.95134 1.02084 0.99219 1.21240 0.95862 0.94386 0.98175 1.21760 1.00371 0.96491 1.00511 1.21405 0.99592 0.95359 0.96945 1.22006 1.01286 0.96047 0.97630 1.20730 0.95956 0.89399 0.88579 0.95181 1.21267 0.99408 0.91595 0.86629 1.45992 1.46240 1.14147 1.27872 1.20351 0.81577 0.82050 0.86400 1.90629 1.35564 1.68182 1.50590 1.21568 1.02255 0.95518 0.98342 1.19730 1.01008 0.93295 0.92167 1.23790 0.88864 1.01350 0.99689 1.22811 1.02291 1.04394 0.95722 1.25994 0.83979 1.03057 1.01621 1.84840 1.30833 1.53641 1.27650 1.73840 1.21114 1.12073 0.99681 1.44019 1.65499 1.05602 1.15655 1.19096 1.15888 1.18148 0.84767 0.91426 1.25054 0.96435 1.00275 0.97141 1.69987 1.26214 1.39277 1.18649 0.86564 0.81446 0.78318 0.81626 1.20888 1.21715 1.21047 1.20775 0.96055 0.83151 0.93780 0.93682 0.95048 0.91585 0.93336 0.93954 0.93067 0.92958 0.93656 0.93168 0.91650 0.91676 0.92851 0.74712 0.88823 0.88636 0.88884 0.89225 0.81137 0.76874 0.93575 0.89905 0.96441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 7.99 37.16 0.30 -1.90 16 2 C -0.09 -1.68 0.77 -154.39 -0.12 -1.80 16 3 C -0.13 -2.09 8.48 37.16 0.32 -1.78 16 4 C -0.10 -1.54 4.71 -26.69 -0.13 -1.66 16 5 C -0.13 -2.14 5.03 -26.61 -0.13 -2.27 16 6 C 0.16 3.01 3.00 -67.60 -0.20 2.81 16 7 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.14 2.51 4.43 -4.04 -0.02 2.49 16 9 N -0.69 -13.04 3.88 -60.29 -0.23 -13.27 16 10 C 0.51 9.42 7.83 -10.99 -0.09 9.33 16 11 O -0.57 -11.79 15.98 5.55 0.09 -11.70 16 12 C -0.14 -2.14 5.67 -27.88 -0.16 -2.30 16 13 C -0.02 -0.33 5.10 -27.88 -0.14 -0.48 16 14 C 0.02 0.30 6.59 -82.10 -0.54 -0.24 16 15 C -0.23 -2.46 11.12 -39.38 -0.44 -2.90 16 16 C -0.06 -0.58 12.30 29.74 0.37 -0.22 16 17 O 0.10 1.18 11.20 17.19 0.19 1.37 16 18 N -0.36 -5.26 12.06 33.42 0.40 -4.86 16 19 N -0.58 -12.77 2.41 -164.78 -0.40 -13.17 16 20 C -0.25 -5.98 6.98 -15.06 -0.11 -6.09 16 21 H 0.07 1.68 5.90 -52.49 -0.31 1.37 16 22 C 0.01 0.26 4.95 -17.43 -0.09 0.18 16 23 N -0.90 -23.85 11.32 55.49 0.63 -23.22 16 24 Si 0.89 20.66 29.58 -169.99 -5.03 15.63 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.19 4.08 3.94 -3.72 -0.01 4.07 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 39 H 0.06 1.32 7.38 -51.93 -0.38 0.94 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.42 8.20 7.44 -40.82 -0.30 7.90 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 45 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 46 H 0.17 1.42 8.06 -52.48 -0.42 0.99 16 47 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.08 2.06 6.27 -51.93 -0.33 1.73 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -28.71 392.38 -7.91 -36.61 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.28 Total: 9.43 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.19 Total: -2.75 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.40 Total: -54.52 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.28 Total: -10.32 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.71 -7.91 -36.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099139790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.758 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds