Wall clock time and date at job start Tue Mar 31 2020 18:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.49549 * 2 1 4 4 C 1.53045 * 109.46781 * 239.92368 * 2 1 3 5 5 C 1.53035 * 109.53903 * 301.36503 * 4 2 1 6 6 C 1.53197 * 109.33809 * 298.68349 * 5 4 2 7 7 H 1.08994 * 109.58742 * 294.83191 * 6 5 4 8 8 C 1.53002 * 109.58625 * 174.40769 * 6 5 4 9 9 N 1.46497 * 109.46998 * 179.89901 * 8 6 5 10 10 C 1.34772 * 120.00004 * 180.02562 * 9 8 6 11 11 O 1.21286 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00155 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46990 * 179.97438 * 13 12 10 15 15 C 1.41378 * 126.80013 * 124.70906 * 14 13 12 16 16 C 1.35453 * 103.98397 * 179.88790 * 15 14 13 17 17 O 1.34035 * 106.44691 * 0.36950 * 16 15 14 18 18 N 1.20926 * 111.56457 * 359.74600 * 17 16 15 19 19 N 1.46927 * 108.77197 * 54.61999 * 6 5 4 20 20 C 1.36943 * 120.62875 * 126.41512 * 19 6 5 21 21 H 1.07999 * 119.99829 * 328.29755 * 20 19 6 22 22 C 1.38811 * 119.99804 * 148.29800 * 20 19 6 23 23 N 1.31614 * 120.00532 * 345.42016 * 22 20 19 24 24 Si 1.86808 * 119.99655 * 165.41593 * 22 20 19 25 25 H 1.48504 * 109.46889 * 60.00335 * 24 22 20 26 26 H 1.48495 * 109.46976 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46869 * 300.00096 * 24 22 20 28 28 C 1.46922 * 118.73929 * 306.38768 * 19 6 5 29 29 H 1.08997 * 109.46888 * 299.93586 * 1 2 3 30 30 H 1.09001 * 109.47460 * 59.93265 * 1 2 3 31 31 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46514 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47092 * 300.06641 * 3 2 1 34 34 H 1.09002 * 109.46814 * 60.06938 * 3 2 1 35 35 H 1.08995 * 109.43126 * 181.35601 * 4 2 1 36 36 H 1.09005 * 109.48487 * 61.40301 * 4 2 1 37 37 H 1.08998 * 109.49920 * 178.71871 * 5 4 2 38 38 H 1.08997 * 109.49927 * 58.65386 * 5 4 2 39 39 H 1.09005 * 109.46895 * 299.89584 * 8 6 5 40 40 H 1.08996 * 109.47205 * 59.89549 * 8 6 5 41 41 H 0.96999 * 120.00337 * 359.97438 * 9 8 6 42 42 H 1.08996 * 109.46873 * 299.99117 * 12 10 9 43 43 H 1.08996 * 109.47224 * 59.99255 * 12 10 9 44 44 H 1.08996 * 109.46974 * 299.99620 * 13 12 10 45 45 H 1.08996 * 109.47205 * 59.99809 * 13 12 10 46 46 H 1.08004 * 128.00835 * 0.02881 * 15 14 13 47 47 H 1.07999 * 126.77519 * 180.09607 * 16 15 14 48 48 H 0.96992 * 120.00465 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.58693 * 173.39553 * 28 19 6 50 50 H 1.08993 * 109.59193 * 293.68008 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0401 -0.7231 -1.2487 5 6 1.5029 -2.1560 -1.2656 6 6 2.0140 -2.9040 -0.0302 7 1 3.0978 -3.0043 -0.0862 8 6 1.3702 -4.2906 0.0326 9 7 1.8625 -5.0045 1.2134 10 6 1.4298 -6.2538 1.4745 11 8 0.6325 -6.7870 0.7321 12 6 1.9365 -6.9884 2.6888 13 6 1.2927 -8.3750 2.7517 14 6 1.8000 -9.1098 3.9657 15 6 1.0198 -9.6829 4.9961 16 6 1.9343 -10.2196 5.8391 17 8 3.1379 -9.9525 5.3132 18 7 3.0434 -9.3376 4.2763 19 7 1.6515 -2.1378 1.1700 20 6 0.9639 -2.7309 2.1951 21 1 0.2593 -3.5222 1.9860 22 6 1.1726 -2.3149 3.5028 23 7 2.2162 -1.5692 3.7977 24 14 -0.0281 -2.8134 4.8443 25 1 -0.0742 -4.2945 4.9419 26 1 0.4159 -2.2448 6.1422 27 1 -1.3808 -2.2966 4.5148 28 6 2.0414 -0.7235 1.2496 29 1 -0.3633 0.5128 0.8905 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1306 1.4417 -0.0005 33 1 1.6765 1.9566 -0.8894 34 1 1.6785 1.9559 0.8906 35 1 3.1297 -0.7439 -1.2360 36 1 1.6975 -0.1963 -2.1393 37 1 1.8479 -2.6633 -2.1665 38 1 0.4132 -2.1362 -1.2540 39 1 0.2871 -4.1857 0.0967 40 1 1.6284 -4.8520 -0.8652 41 1 2.5004 -4.5782 1.8069 42 1 3.0195 -7.0930 2.6244 43 1 1.6785 -6.4272 3.5869 44 1 0.2097 -8.2700 2.8163 45 1 1.5505 -8.9363 1.8537 46 1 -0.0562 -9.6928 5.0884 47 1 1.7333 -10.7530 6.7564 48 1 2.3618 -1.2783 4.7114 49 1 1.6007 -0.2725 2.1389 50 1 3.1273 -0.6461 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099139790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:35 Heat of formation + Delta-G solvation = 13.694454 kcal Electronic energy + Delta-G solvation = -30180.109221 eV Core-core repulsion = 26210.082418 eV Total energy + Delta-G solvation = -3970.026803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.89072 -40.90809 -39.95954 -36.76747 -36.18141 -34.97065 -33.73007 -33.03086 -32.13038 -31.74791 -29.05458 -28.01576 -27.31261 -26.52736 -24.62476 -24.06492 -23.76745 -21.79623 -21.70735 -20.91591 -19.46442 -18.87637 -18.54040 -18.33961 -17.53959 -17.27415 -16.77811 -16.53680 -15.96711 -15.72421 -15.52100 -15.30486 -14.90532 -14.79128 -14.63352 -14.44795 -14.15067 -13.96512 -13.76247 -13.37917 -13.29210 -13.11658 -13.01195 -12.83083 -12.72277 -12.62119 -12.50194 -12.48452 -12.24134 -12.11956 -11.98823 -11.86760 -11.62809 -11.26366 -11.08428 -10.99042 -10.89064 -10.71207 -10.53147 -10.47046 -9.81567 -8.50076 -7.79952 -5.26280 0.64550 1.27900 1.40509 1.46025 1.49221 1.72112 2.38874 2.50231 2.53623 3.21868 3.34756 3.58163 3.63556 3.86769 4.00857 4.04185 4.07291 4.18724 4.21152 4.30210 4.33440 4.43338 4.51074 4.53511 4.61874 4.69374 4.71297 4.77585 4.87137 4.91664 4.93756 4.96461 5.03013 5.05931 5.10546 5.14100 5.16663 5.17417 5.25914 5.39656 5.49390 5.54407 5.59716 5.67548 5.74040 5.82292 5.88862 6.47508 6.72138 7.22761 7.34264 7.37526 7.92262 8.46450 9.23978 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003206 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.564107 B = 8730.528404 C = 9786.612348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.160 3.840 7 H 0.027 0.973 8 C 0.140 3.860 9 N -0.696 5.696 10 C 0.510 3.490 11 O -0.590 6.590 12 C -0.127 4.127 13 C -0.016 4.016 14 C 0.000 4.000 15 C -0.246 4.246 16 C -0.042 4.042 17 O 0.089 5.911 18 N -0.397 5.397 19 N -0.595 5.595 20 C -0.228 4.228 21 H 0.060 0.940 22 C -0.032 4.032 23 N -0.924 5.924 24 Si 0.932 3.068 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.290 1.290 28 C 0.197 3.803 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.410 0.590 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.193 0.807 47 H 0.265 0.735 48 H 0.246 0.754 49 H 0.046 0.954 50 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -8.769 -1.929 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.129 4.129 5 C -0.163 4.163 6 C 0.054 3.946 7 H 0.045 0.955 8 C 0.016 3.984 9 N -0.345 5.345 10 C 0.297 3.703 11 O -0.473 6.473 12 C -0.167 4.167 13 C -0.055 4.055 14 C -0.158 4.158 15 C -0.267 4.267 16 C -0.123 4.123 17 O 0.024 5.976 18 N -0.102 5.102 19 N -0.318 5.318 20 C -0.359 4.359 21 H 0.078 0.922 22 C -0.228 4.228 23 N -0.571 5.571 24 Si 0.763 3.237 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.217 1.217 28 C 0.071 3.929 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.247 0.753 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.210 0.790 47 H 0.281 0.719 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -0.042 -8.775 -2.877 9.234 hybrid contribution -1.118 0.208 1.772 2.106 sum -1.161 -8.567 -1.104 8.715 Atomic orbital electron populations 1.21617 0.94940 1.01018 0.99836 1.21150 0.95908 0.95434 0.96874 1.21710 1.00508 0.95035 1.01378 1.21385 0.99606 0.94999 0.96864 1.21948 1.00989 0.96284 0.97127 1.20863 0.95777 0.89516 0.88415 0.95515 1.21241 0.98162 0.91777 0.87220 1.46063 1.46093 1.14401 1.27927 1.20763 0.80975 0.81798 0.86772 1.90610 1.36534 1.68590 1.51554 1.21500 1.02639 0.96085 0.96479 1.19600 1.00872 0.92246 0.92757 1.23870 0.89481 1.02163 1.00249 1.23153 1.03628 1.04705 0.95225 1.26901 0.82126 1.01171 1.02091 1.84787 1.32383 1.53320 1.27137 1.73835 1.21857 1.13513 1.01000 1.44176 1.65356 1.06161 1.16149 1.19097 1.14770 1.16855 0.85175 0.92199 1.25468 0.97548 1.01246 0.98559 1.70105 1.27695 1.41080 1.18182 0.85882 0.79775 0.78209 0.79853 1.20232 1.22501 1.21652 1.20555 0.94271 0.83426 0.94618 0.95276 0.92147 0.93457 0.93132 0.91250 0.94008 0.92900 0.90792 0.90356 0.92047 0.93497 0.91179 0.75305 0.88238 0.89337 0.88777 0.89675 0.79018 0.71935 0.94460 0.93563 0.98901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.99 71.98 0.57 -3.40 16 2 C -0.09 -3.14 0.77 -52.10 -0.04 -3.18 16 3 C -0.13 -3.79 8.48 71.98 0.61 -3.18 16 4 C -0.09 -2.67 4.71 30.62 0.14 -2.52 16 5 C -0.12 -3.78 5.03 30.67 0.15 -3.62 16 6 C 0.16 5.92 3.00 44.98 0.14 6.05 16 7 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 8 C 0.14 5.14 4.43 86.38 0.38 5.53 16 9 N -0.70 -26.41 3.88 -463.06 -1.80 -28.21 16 10 C 0.51 18.94 7.83 87.66 0.69 19.62 16 11 O -0.59 -24.48 15.98 -3.05 -0.05 -24.53 16 12 C -0.13 -4.02 5.67 29.85 0.17 -3.86 16 13 C -0.02 -0.46 5.10 29.85 0.15 -0.31 16 14 C 0.00 0.01 6.59 43.58 0.29 0.30 16 15 C -0.25 -4.77 11.12 22.40 0.25 -4.52 16 16 C -0.04 -0.63 12.30 67.18 0.83 0.19 16 17 O 0.09 2.06 11.20 71.68 0.80 2.87 16 18 N -0.40 -11.35 12.06 -49.56 -0.60 -11.95 16 19 N -0.59 -26.31 2.41 -675.24 -1.62 -27.93 16 20 C -0.23 -11.17 6.98 84.03 0.59 -10.58 16 21 H 0.06 3.03 5.90 -2.91 -0.02 3.01 16 22 C -0.03 -1.65 4.95 84.86 0.42 -1.23 16 23 N -0.92 -50.88 11.32 21.65 0.25 -50.63 16 24 Si 0.93 43.30 29.58 68.60 2.03 45.33 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 C 0.20 8.71 3.94 86.36 0.34 9.05 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.77 5.97 -2.39 -0.01 1.76 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.95 6.34 -2.39 -0.02 1.94 16 39 H 0.05 1.90 7.38 -2.38 -0.02 1.88 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.41 16.52 7.44 -92.71 -0.69 15.83 16 42 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 45 H 0.08 2.45 8.10 -2.39 -0.02 2.43 16 46 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 47 H 0.26 0.93 8.06 -2.91 -0.02 0.90 16 48 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 49 H 0.05 2.38 6.27 -2.38 -0.01 2.37 16 50 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: -1.00 -64.24 392.38 4.93 -59.31 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.24 Total: 31.41 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.68 Total: 4.34 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -3.77 Total: -118.72 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.75 Total: -21.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.24 4.93 -59.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099139790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.003 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds