Wall clock time and date at job start Tue Mar 31 2020 19:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 110.21472 * 2 1 4 4 O 1.21285 * 119.99802 * 95.70235 * 3 2 1 5 5 N 1.34773 * 120.00452 * 275.70071 * 3 2 1 6 6 C 1.46495 * 120.00382 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47333 * 180.02562 * 6 5 3 8 8 C 1.53353 * 111.22771 * 299.52875 * 7 6 5 9 9 C 1.54272 * 106.46519 * 242.71653 * 8 7 6 10 10 C 1.54680 * 104.11675 * 333.97182 * 9 8 7 11 11 C 1.54575 * 111.31579 * 180.02562 * 7 6 5 12 12 H 1.08994 * 111.92944 * 18.14415 * 11 7 6 13 13 N 1.46903 * 107.36491 * 255.05226 * 11 7 6 14 14 C 1.36936 * 125.24509 * 181.65001 * 13 11 7 15 15 H 1.07995 * 120.00146 * 9.63815 * 14 13 11 16 16 C 1.38814 * 119.99650 * 189.63116 * 14 13 11 17 17 N 1.31614 * 119.99922 * 8.99625 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 188.99760 * 16 14 13 19 19 H 1.48499 * 109.46983 * 94.39098 * 18 16 14 20 20 H 1.48498 * 109.47009 * 214.38934 * 18 16 14 21 21 H 1.48497 * 109.47367 * 334.38843 * 18 16 14 22 22 C 1.46726 * 109.49990 * 1.65670 * 13 11 7 23 23 C 1.53865 * 111.73074 * 63.26157 * 7 6 5 24 24 C 1.54475 * 110.24515 * 121.93258 * 2 1 3 25 25 C 1.54630 * 101.76056 * 144.50427 * 24 2 1 26 26 C 1.51281 * 104.19745 * 335.19929 * 25 24 2 27 27 O 1.21279 * 124.94416 * 196.27949 * 26 25 24 28 28 N 1.34618 * 110.15031 * 16.23433 * 26 25 24 29 29 H 1.08994 * 109.47369 * 59.29111 * 1 2 3 30 30 H 1.08996 * 109.46949 * 179.29641 * 1 2 3 31 31 H 1.09005 * 109.46561 * 299.29598 * 1 2 3 32 32 H 0.97000 * 120.00115 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47120 * 59.99893 * 6 5 3 34 34 H 1.09003 * 109.47274 * 300.00756 * 6 5 3 35 35 H 1.08997 * 110.05464 * 1.97477 * 8 7 6 36 36 H 1.09005 * 110.05376 * 123.46620 * 8 7 6 37 37 H 1.09004 * 110.49360 * 92.63058 * 9 8 7 38 38 H 1.08997 * 110.49986 * 215.17486 * 9 8 7 39 39 H 1.09000 * 110.61121 * 278.83229 * 10 9 8 40 40 H 1.08994 * 110.60943 * 155.84548 * 10 9 8 41 41 H 0.97004 * 119.99790 * 179.97438 * 17 16 14 42 42 H 1.08990 * 110.04842 * 100.51121 * 22 13 11 43 43 H 1.09005 * 110.04162 * 221.97592 * 22 13 11 44 44 H 1.08998 * 110.57942 * 335.64197 * 23 7 6 45 45 H 1.09007 * 110.56772 * 212.76617 * 23 7 6 46 46 H 1.09002 * 110.96796 * 262.61818 * 24 2 1 47 47 H 1.08993 * 110.97285 * 26.38756 * 24 2 1 48 48 H 1.08996 * 110.48778 * 93.88182 * 25 24 2 49 49 H 1.09005 * 110.48310 * 216.52198 * 25 24 2 50 50 H 0.96992 * 124.47397 * 180.46567 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0508 1.4142 0.0000 4 8 2.3583 1.9471 1.0452 5 7 2.1749 2.0867 -1.1613 6 6 2.6805 3.4616 -1.1613 7 6 2.7219 3.9899 -2.5966 8 6 3.6472 3.1392 -3.4751 9 6 4.7849 4.0706 -3.9421 10 6 4.1561 5.4833 -3.9026 11 6 3.2511 5.4414 -2.6460 12 1 3.7850 5.7113 -1.7349 13 7 2.0985 6.3205 -2.8847 14 6 2.1583 7.6812 -3.0255 15 1 3.1153 8.1729 -3.1191 16 6 0.9888 8.4287 -3.0480 17 7 -0.1618 7.8591 -2.7584 18 14 1.0482 10.2428 -3.4894 19 1 0.7780 10.4084 -4.9402 20 1 0.0205 10.9763 -2.7076 21 1 2.3931 10.7860 -3.1712 22 6 0.8735 5.5154 -2.9487 23 6 1.3159 4.0634 -3.2173 24 6 2.0646 -0.7666 1.2300 25 6 3.3300 -1.4434 0.6541 26 6 3.0548 -1.5427 -0.8302 27 8 3.6615 -2.2536 -1.6031 28 7 2.0379 -0.7282 -1.1688 29 1 -0.3634 0.5248 -0.8835 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3632 0.5029 0.8963 32 1 1.9287 1.6606 -1.9972 33 1 3.6849 3.4793 -0.7381 34 1 2.0227 4.0907 -0.5616 35 1 4.0557 2.3114 -2.8955 36 1 3.0985 2.7581 -4.3365 37 1 5.6320 4.0105 -3.2588 38 1 5.0944 3.8164 -4.9558 39 1 3.5615 5.6638 -4.7982 40 1 4.9288 6.2442 -3.7938 41 1 -0.9790 8.3815 -2.7738 42 1 0.3383 5.5735 -2.0010 43 1 0.2368 5.8680 -3.7602 44 1 0.6430 3.3606 -2.7261 45 1 1.3596 3.8682 -4.2888 46 1 2.3223 -0.0795 2.0361 47 1 1.3442 -1.5109 1.5691 48 1 4.2098 -0.8270 0.8385 49 1 3.4614 -2.4360 1.0850 50 1 1.6856 -0.6342 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107540270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:27 Heat of formation + Delta-G solvation = -55.321451 kcal Electronic energy + Delta-G solvation = -30777.898787 eV Core-core repulsion = 26804.879230 eV Total energy + Delta-G solvation = -3973.019558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.37618 -39.82298 -38.83146 -36.67776 -34.92440 -34.05768 -31.94654 -31.54737 -31.24103 -30.28842 -27.96798 -26.74307 -25.46018 -24.59813 -23.88354 -22.74706 -21.03729 -20.47519 -20.13440 -19.78254 -18.80123 -17.92131 -17.07884 -16.86083 -15.92411 -15.68433 -15.39021 -15.01596 -14.85477 -14.59749 -14.28668 -14.20665 -13.90016 -13.67345 -13.51187 -13.24768 -13.06243 -12.92669 -12.74758 -12.61050 -12.47115 -11.90349 -11.66386 -11.54626 -11.40871 -11.34096 -11.20832 -10.80312 -10.75764 -10.69413 -10.60312 -10.30450 -10.18569 -10.13574 -10.01683 -9.87271 -9.70175 -9.60964 -9.27426 -9.00011 -8.58026 -6.81006 -5.75314 -3.08172 2.24913 2.35328 2.96167 3.04700 3.38530 3.44503 3.46064 3.87417 4.11598 4.31853 4.47855 4.54032 4.68554 4.86156 4.92055 4.93156 4.97394 5.17592 5.26903 5.37433 5.46761 5.49198 5.50623 5.53047 5.66534 5.67367 5.70972 5.76648 5.82242 5.97792 6.00607 6.06348 6.11600 6.24933 6.29443 6.34340 6.35909 6.41595 6.53211 6.60624 6.62240 6.71395 6.80624 7.07140 7.41075 7.50596 7.59931 7.78617 7.88240 8.07853 8.26067 9.20411 9.82113 10.47393 11.36956 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.003070 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.171693 B = 9119.783864 C = 9877.484923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 C 0.508 3.492 4 O -0.531 6.531 5 N -0.712 5.712 6 C 0.139 3.861 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.123 4.123 10 C -0.130 4.130 11 C 0.173 3.827 12 H 0.048 0.952 13 N -0.594 5.594 14 C -0.226 4.226 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.178 3.822 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.159 4.159 26 C 0.524 3.476 27 O -0.529 6.529 28 N -0.723 5.723 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -18.649 4.260 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 C 0.291 3.709 4 O -0.407 6.407 5 N -0.363 5.363 6 C 0.017 3.983 7 C -0.082 4.082 8 C -0.149 4.149 9 C -0.161 4.161 10 C -0.170 4.170 11 C 0.064 3.936 12 H 0.065 0.935 13 N -0.318 5.318 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.053 3.947 23 C -0.171 4.171 24 C -0.153 4.153 25 C -0.199 4.199 26 C 0.311 3.689 27 O -0.405 6.405 28 N -0.381 5.381 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.129 0.871 47 H 0.111 0.889 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.983 -18.438 4.731 19.268 hybrid contribution -0.414 1.000 -1.109 1.549 sum 2.569 -17.438 3.623 17.995 Atomic orbital electron populations 1.22069 0.90723 1.03855 1.04339 1.21266 0.96581 0.89482 0.87622 1.20609 0.78381 0.87688 0.84195 1.90729 1.49375 1.69320 1.31280 1.46022 1.65704 1.15725 1.08823 1.21406 0.99440 0.80599 0.96894 1.21859 0.96914 0.96524 0.92912 1.22164 0.96675 0.97431 0.98642 1.22305 0.97298 0.96337 1.00130 1.22992 0.98826 0.94560 1.00638 1.21523 0.89814 0.87229 0.94992 0.93470 1.44312 1.01175 1.02423 1.83893 1.19004 0.92984 0.80753 1.42737 0.90620 1.24812 0.95740 0.97986 1.01780 1.69971 0.97704 1.35004 1.53829 0.86148 0.77143 0.84859 0.77908 1.21707 1.21823 1.20604 1.21048 0.88973 0.84487 1.00159 1.22783 0.94207 1.00803 0.99353 1.22671 0.96555 0.99697 0.96388 1.22409 1.00319 1.04178 0.92970 1.20973 0.78605 0.78132 0.91165 1.90773 1.51514 1.40598 1.57603 1.46401 1.36677 1.44127 1.10935 0.91156 0.90454 0.89828 0.76786 0.91535 0.90562 0.92460 0.91799 0.92349 0.92459 0.91035 0.92693 0.93804 0.95308 0.92371 0.92538 0.92077 0.87117 0.88922 0.87502 0.87555 0.74914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.79 37.16 0.33 -0.67 16 2 C 0.14 1.16 1.12 -132.05 -0.15 1.02 16 3 C 0.51 6.09 6.75 -10.99 -0.07 6.02 16 4 O -0.53 -8.25 15.66 5.55 0.09 -8.17 16 5 N -0.71 -8.45 4.54 -60.29 -0.27 -8.73 16 6 C 0.14 2.09 4.45 -4.04 -0.02 2.07 16 7 C -0.08 -1.26 0.53 -153.04 -0.08 -1.34 16 8 C -0.11 -1.47 5.57 -25.88 -0.14 -1.62 16 9 C -0.12 -1.71 6.85 -25.18 -0.17 -1.88 16 10 C -0.13 -2.27 6.22 -24.84 -0.15 -2.43 16 11 C 0.17 3.35 3.60 -65.88 -0.24 3.11 16 12 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 13 N -0.59 -14.28 2.99 -162.41 -0.49 -14.77 16 14 C -0.23 -6.09 9.92 -15.06 -0.15 -6.24 16 15 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 16 C -0.01 -0.18 5.41 -17.43 -0.09 -0.27 16 17 N -0.92 -26.37 10.58 55.49 0.59 -25.79 16 18 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.18 4.08 5.36 -3.32 -0.02 4.06 16 23 C -0.13 -2.23 5.83 -25.68 -0.15 -2.38 16 24 C -0.12 -0.82 6.14 -25.10 -0.15 -0.98 16 25 C -0.16 -1.24 6.85 -26.74 -0.18 -1.42 16 26 C 0.52 5.47 8.44 -10.77 -0.09 5.38 16 27 O -0.53 -7.65 18.03 5.56 0.10 -7.55 16 28 N -0.72 -5.89 4.96 -47.63 -0.24 -6.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 3.95 7.00 -40.82 -0.29 3.67 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.70 7.44 -51.93 -0.39 0.32 16 36 H 0.06 0.80 7.27 -51.93 -0.38 0.42 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 43 H 0.06 1.50 7.16 -51.93 -0.37 1.13 16 44 H 0.06 0.83 7.24 -51.93 -0.38 0.46 16 45 H 0.06 0.99 7.41 -51.93 -0.38 0.61 16 46 H 0.11 0.92 6.89 -51.93 -0.36 0.56 16 47 H 0.09 0.46 7.91 -51.93 -0.41 0.05 16 48 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.41 2.81 8.78 -40.82 -0.36 2.45 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -32.88 387.94 -9.26 -42.14 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.32 Total: 3.92 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.54 Total: 2.43 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.41 Total: -55.41 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.19 Total: -15.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.88 -9.26 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107540270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.184 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds