Wall clock time and date at job start Tue Mar 31 2020 19:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 110.21472 * 2 1 4 4 O 1.21285 * 119.99802 * 95.70235 * 3 2 1 5 5 N 1.34773 * 120.00452 * 275.70071 * 3 2 1 6 6 C 1.46495 * 120.00382 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47333 * 180.02562 * 6 5 3 8 8 C 1.53353 * 111.22771 * 299.52875 * 7 6 5 9 9 C 1.54272 * 106.46519 * 242.71653 * 8 7 6 10 10 C 1.54680 * 104.11675 * 333.97182 * 9 8 7 11 11 C 1.54575 * 111.31579 * 180.02562 * 7 6 5 12 12 H 1.08994 * 111.92944 * 18.14415 * 11 7 6 13 13 N 1.46903 * 107.36491 * 255.05226 * 11 7 6 14 14 C 1.36936 * 125.24509 * 181.65001 * 13 11 7 15 15 H 1.07995 * 120.00146 * 9.63815 * 14 13 11 16 16 C 1.38814 * 119.99650 * 189.63116 * 14 13 11 17 17 N 1.31614 * 119.99922 * 8.99625 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 188.99760 * 16 14 13 19 19 H 1.48499 * 109.46983 * 94.39098 * 18 16 14 20 20 H 1.48498 * 109.47009 * 214.38934 * 18 16 14 21 21 H 1.48497 * 109.47367 * 334.38843 * 18 16 14 22 22 C 1.46726 * 109.49990 * 1.65670 * 13 11 7 23 23 C 1.53865 * 111.73074 * 63.26157 * 7 6 5 24 24 C 1.54475 * 110.24515 * 121.93258 * 2 1 3 25 25 C 1.54630 * 101.76056 * 144.50427 * 24 2 1 26 26 C 1.51281 * 104.19745 * 335.19929 * 25 24 2 27 27 O 1.21279 * 124.94416 * 196.27949 * 26 25 24 28 28 N 1.34618 * 110.15031 * 16.23433 * 26 25 24 29 29 H 1.08994 * 109.47369 * 59.29111 * 1 2 3 30 30 H 1.08996 * 109.46949 * 179.29641 * 1 2 3 31 31 H 1.09005 * 109.46561 * 299.29598 * 1 2 3 32 32 H 0.97000 * 120.00115 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47120 * 59.99893 * 6 5 3 34 34 H 1.09003 * 109.47274 * 300.00756 * 6 5 3 35 35 H 1.08997 * 110.05464 * 1.97477 * 8 7 6 36 36 H 1.09005 * 110.05376 * 123.46620 * 8 7 6 37 37 H 1.09004 * 110.49360 * 92.63058 * 9 8 7 38 38 H 1.08997 * 110.49986 * 215.17486 * 9 8 7 39 39 H 1.09000 * 110.61121 * 278.83229 * 10 9 8 40 40 H 1.08994 * 110.60943 * 155.84548 * 10 9 8 41 41 H 0.97004 * 119.99790 * 179.97438 * 17 16 14 42 42 H 1.08990 * 110.04842 * 100.51121 * 22 13 11 43 43 H 1.09005 * 110.04162 * 221.97592 * 22 13 11 44 44 H 1.08998 * 110.57942 * 335.64197 * 23 7 6 45 45 H 1.09007 * 110.56772 * 212.76617 * 23 7 6 46 46 H 1.09002 * 110.96796 * 262.61818 * 24 2 1 47 47 H 1.08993 * 110.97285 * 26.38756 * 24 2 1 48 48 H 1.08996 * 110.48778 * 93.88182 * 25 24 2 49 49 H 1.09005 * 110.48310 * 216.52198 * 25 24 2 50 50 H 0.96992 * 124.47397 * 180.46567 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0508 1.4142 0.0000 4 8 2.3583 1.9471 1.0452 5 7 2.1749 2.0867 -1.1613 6 6 2.6805 3.4616 -1.1613 7 6 2.7219 3.9899 -2.5966 8 6 3.6472 3.1392 -3.4751 9 6 4.7849 4.0706 -3.9421 10 6 4.1561 5.4833 -3.9026 11 6 3.2511 5.4414 -2.6460 12 1 3.7850 5.7113 -1.7349 13 7 2.0985 6.3205 -2.8847 14 6 2.1583 7.6812 -3.0255 15 1 3.1153 8.1729 -3.1191 16 6 0.9888 8.4287 -3.0480 17 7 -0.1618 7.8591 -2.7584 18 14 1.0482 10.2428 -3.4894 19 1 0.7780 10.4084 -4.9402 20 1 0.0205 10.9763 -2.7076 21 1 2.3931 10.7860 -3.1712 22 6 0.8735 5.5154 -2.9487 23 6 1.3159 4.0634 -3.2173 24 6 2.0646 -0.7666 1.2300 25 6 3.3300 -1.4434 0.6541 26 6 3.0548 -1.5427 -0.8302 27 8 3.6615 -2.2536 -1.6031 28 7 2.0379 -0.7282 -1.1688 29 1 -0.3634 0.5248 -0.8835 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3632 0.5029 0.8963 32 1 1.9287 1.6606 -1.9972 33 1 3.6849 3.4793 -0.7381 34 1 2.0227 4.0907 -0.5616 35 1 4.0557 2.3114 -2.8955 36 1 3.0985 2.7581 -4.3365 37 1 5.6320 4.0105 -3.2588 38 1 5.0944 3.8164 -4.9558 39 1 3.5615 5.6638 -4.7982 40 1 4.9288 6.2442 -3.7938 41 1 -0.9790 8.3815 -2.7738 42 1 0.3383 5.5735 -2.0010 43 1 0.2368 5.8680 -3.7602 44 1 0.6430 3.3606 -2.7261 45 1 1.3596 3.8682 -4.2888 46 1 2.3223 -0.0795 2.0361 47 1 1.3442 -1.5109 1.5691 48 1 4.2098 -0.8270 0.8385 49 1 3.4614 -2.4360 1.0850 50 1 1.6856 -0.6342 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107540270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:25 Heat of formation + Delta-G solvation = -78.157329 kcal Electronic energy + Delta-G solvation = -30778.889025 eV Core-core repulsion = 26804.879230 eV Total energy + Delta-G solvation = -3974.009796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.21883 -41.12168 -39.90569 -37.55683 -36.38446 -35.48235 -33.54644 -32.43610 -32.07765 -31.67447 -29.33540 -28.37902 -26.37306 -25.74463 -25.53888 -23.68145 -21.98471 -21.76842 -21.45707 -20.90488 -19.89444 -19.19212 -18.67125 -17.83162 -16.92862 -16.87716 -16.72397 -16.46619 -16.06969 -15.85136 -15.47753 -15.17057 -14.96640 -14.82715 -14.60439 -14.47224 -14.30896 -14.08693 -13.55967 -13.47835 -13.46631 -13.36100 -13.19694 -12.93101 -12.84974 -12.61045 -12.44425 -12.12657 -12.00839 -11.99451 -11.91951 -11.67638 -11.63710 -11.48557 -11.41574 -11.33799 -11.11878 -11.01186 -10.64902 -10.16896 -10.12289 -8.81044 -7.85871 -5.19628 1.40566 1.44699 1.45308 1.47952 1.54325 2.04935 2.25370 2.49578 3.21450 3.31305 3.42441 3.48911 3.61680 3.65392 3.67287 3.83081 3.95251 4.08739 4.23618 4.34980 4.37121 4.39036 4.48291 4.57147 4.63841 4.65447 4.72372 4.78849 4.83718 4.84221 4.90359 4.99906 5.01989 5.08726 5.11455 5.13878 5.18880 5.25453 5.33197 5.36343 5.44123 5.50633 5.60840 5.64595 5.67505 5.78352 5.91258 6.23765 6.44750 7.10810 7.12941 7.15462 7.82723 8.45714 9.24979 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.003070 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.171693 B = 9119.783864 C = 9877.484923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.150 3.850 3 C 0.505 3.495 4 O -0.569 6.569 5 N -0.704 5.704 6 C 0.151 3.849 7 C -0.067 4.067 8 C -0.102 4.102 9 C -0.113 4.113 10 C -0.125 4.125 11 C 0.157 3.843 12 H 0.033 0.967 13 N -0.612 5.612 14 C -0.233 4.233 15 H 0.076 0.924 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.270 1.270 22 C 0.186 3.814 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.156 4.156 26 C 0.522 3.478 27 O -0.573 6.573 28 N -0.710 5.710 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.410 0.590 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.245 0.755 42 H -0.010 1.010 43 H 0.021 0.979 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.122 0.878 48 H 0.102 0.898 49 H 0.126 0.874 50 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -21.130 3.750 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.059 3.941 3 C 0.290 3.710 4 O -0.447 6.447 5 N -0.355 5.355 6 C 0.027 3.973 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.151 4.151 10 C -0.164 4.164 11 C 0.050 3.950 12 H 0.051 0.949 13 N -0.336 5.336 14 C -0.363 4.363 15 H 0.094 0.906 16 C -0.257 4.257 17 N -0.597 5.597 18 Si 0.800 3.200 19 H -0.215 1.215 20 H -0.224 1.224 21 H -0.195 1.195 22 C 0.060 3.940 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.196 4.196 26 C 0.310 3.690 27 O -0.452 6.452 28 N -0.367 5.367 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.008 0.992 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.141 0.859 48 H 0.121 0.879 49 H 0.144 0.856 50 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.713 -20.938 4.200 21.675 hybrid contribution -0.620 1.832 -0.888 2.128 sum 3.093 -19.105 3.312 19.635 Atomic orbital electron populations 1.22109 0.88871 1.05447 1.04377 1.21251 0.97680 0.86896 0.88240 1.21349 0.77315 0.88993 0.83328 1.90720 1.50827 1.70535 1.32595 1.45877 1.65531 1.14394 1.09745 1.21042 0.98569 0.81845 0.95814 1.21723 0.96537 0.94742 0.93777 1.22129 0.95880 0.97132 0.98835 1.22267 0.97544 0.93432 1.01854 1.22820 0.98071 0.97264 0.98271 1.21801 0.88948 0.88815 0.95404 0.94889 1.44579 1.03018 1.02295 1.83753 1.19328 0.92940 0.82524 1.41476 0.90625 1.25582 0.95581 1.01947 1.02634 1.70174 0.97988 1.36107 1.55397 0.85163 0.77228 0.80262 0.77334 1.21460 1.22371 1.19455 1.20806 0.88250 0.88166 0.96744 1.22634 0.95207 0.96820 1.00721 1.22731 0.96884 0.99848 0.95348 1.22444 1.00438 1.05322 0.91357 1.21340 0.78269 0.77535 0.91861 1.90755 1.53022 1.42526 1.58881 1.46332 1.35925 1.43050 1.11394 0.90908 0.88070 0.90120 0.75278 0.91749 0.94186 0.90556 0.89931 0.91203 0.90324 0.92948 0.93225 0.94531 0.99247 0.96056 0.90097 0.90519 0.88215 0.85945 0.87950 0.85624 0.74003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.79 71.98 0.63 -0.87 16 2 C 0.15 2.09 1.12 3.31 0.00 2.09 16 3 C 0.51 11.36 6.75 87.66 0.59 11.95 16 4 O -0.57 -17.44 15.66 -3.05 -0.05 -17.48 16 5 N -0.70 -15.46 4.54 -463.06 -2.10 -17.56 16 6 C 0.15 4.47 4.45 86.38 0.38 4.85 16 7 C -0.07 -2.00 0.53 -51.23 -0.03 -2.03 16 8 C -0.10 -2.34 5.57 31.14 0.17 -2.17 16 9 C -0.11 -2.79 6.85 31.60 0.22 -2.57 16 10 C -0.12 -4.24 6.22 31.82 0.20 -4.05 16 11 C 0.16 6.15 3.60 46.10 0.17 6.32 16 12 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 13 N -0.61 -30.52 2.99 -667.75 -1.99 -32.51 16 14 C -0.23 -12.97 9.92 84.03 0.83 -12.13 16 15 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 16 C -0.06 -3.65 5.41 84.86 0.46 -3.19 16 17 N -0.95 -56.98 10.58 21.65 0.23 -56.75 16 18 Si 0.97 46.06 29.56 68.60 2.03 48.09 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.19 8.85 5.36 86.72 0.46 9.32 16 23 C -0.12 -3.78 5.83 31.27 0.18 -3.59 16 24 C -0.11 -1.28 6.14 31.65 0.19 -1.08 16 25 C -0.16 -2.06 6.85 30.59 0.21 -1.85 16 26 C 0.52 9.66 8.44 87.87 0.74 10.40 16 27 O -0.57 -15.60 18.03 -3.03 -0.05 -15.66 16 28 N -0.71 -9.50 4.96 -423.08 -2.10 -11.60 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.90 16 32 H 0.41 6.90 7.00 -92.71 -0.65 6.25 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.53 7.44 -2.39 -0.02 1.52 16 36 H 0.08 1.67 7.27 -2.38 -0.02 1.65 16 37 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H -0.01 -0.57 7.83 -2.39 -0.02 -0.59 16 43 H 0.02 1.15 7.16 -2.38 -0.02 1.13 16 44 H 0.08 2.25 7.24 -2.39 -0.02 2.23 16 45 H 0.08 2.31 7.41 -2.38 -0.02 2.30 16 46 H 0.10 1.47 6.89 -2.39 -0.02 1.46 16 47 H 0.12 0.73 7.91 -2.39 -0.02 0.71 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.42 4.36 8.78 -92.71 -0.81 3.54 16 Total: -1.00 -76.31 387.94 0.87 -75.44 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.51 Total: 16.64 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.42 Total: 11.39 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.96 Total: -118.41 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.10 Total: -33.14 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.31 0.87 -75.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107540270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.721 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds