Wall clock time and date at job start Tue Mar 31 2020 19:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 110.43446 * 2 1 4 4 O 1.21278 * 119.99424 * 241.08658 * 3 2 1 5 5 N 1.34773 * 120.00117 * 61.08127 * 3 2 1 6 6 C 1.46500 * 119.99865 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47148 * 179.97438 * 6 5 3 8 8 C 1.53293 * 111.27947 * 299.91968 * 7 6 5 9 9 C 1.53753 * 107.16772 * 242.26930 * 8 7 6 10 10 C 1.53854 * 105.93684 * 340.30158 * 9 8 7 11 11 C 1.53834 * 105.70003 * 27.38203 * 10 9 8 12 12 H 1.08994 * 110.79605 * 95.89351 * 11 10 9 13 13 N 1.46676 * 109.39041 * 218.30448 * 11 10 9 14 14 C 1.36939 * 125.36417 * 300.15272 * 13 11 10 15 15 H 1.07991 * 120.00085 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99646 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99878 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47087 * 60.00363 * 18 16 14 20 20 H 1.48500 * 109.47227 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47450 * 300.00241 * 18 16 14 22 22 C 1.48351 * 108.41485 * 119.90077 * 13 11 10 23 23 C 1.54013 * 106.80328 * 340.23064 * 22 13 11 24 24 C 1.54624 * 110.60262 * 237.37590 * 2 1 3 25 25 C 1.54478 * 101.76513 * 216.46750 * 24 2 1 26 26 N 1.46763 * 105.47473 * 25.42052 * 25 24 2 27 27 C 1.34420 * 111.29786 * 342.97639 * 26 25 24 28 28 O 1.21279 * 124.94218 * 180.36773 * 27 26 25 29 29 H 1.09008 * 109.47003 * 60.70518 * 1 2 3 30 30 H 1.09003 * 109.47289 * 180.70387 * 1 2 3 31 31 H 1.08993 * 109.47709 * 300.70585 * 1 2 3 32 32 H 0.96996 * 120.00030 * 0.02562 * 5 3 2 33 33 H 1.08994 * 109.47203 * 59.99719 * 6 5 3 34 34 H 1.09004 * 109.47002 * 299.99997 * 6 5 3 35 35 H 1.09002 * 109.91175 * 2.57095 * 8 7 6 36 36 H 1.08996 * 109.91678 * 123.85198 * 8 7 6 37 37 H 1.08997 * 110.62286 * 220.91760 * 9 8 7 38 38 H 1.08999 * 109.64142 * 99.16931 * 9 8 7 39 39 H 1.09002 * 110.21897 * 268.29780 * 10 9 8 40 40 H 1.09002 * 110.21133 * 146.46003 * 10 9 8 41 41 H 0.96998 * 119.99735 * 179.97438 * 17 16 14 42 42 H 1.09004 * 110.13458 * 220.74158 * 22 13 11 43 43 H 1.08999 * 109.70272 * 99.47862 * 22 13 11 44 44 H 1.09008 * 110.52461 * 268.53057 * 23 22 13 45 45 H 1.09000 * 110.52526 * 145.79513 * 23 22 13 46 46 H 1.08997 * 110.96680 * 334.59095 * 24 2 1 47 47 H 1.09002 * 110.96733 * 98.34989 * 24 2 1 48 48 H 1.08997 * 110.24996 * 266.41237 * 25 24 2 49 49 H 1.09000 * 110.24267 * 144.41579 * 25 24 2 50 50 H 0.96998 * 124.35282 * 162.96057 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7437 1.8031 -0.9194 5 7 1.7625 2.2408 1.0216 6 6 2.2736 3.6137 1.0213 7 6 1.7976 4.3354 2.2836 8 6 0.2670 4.3863 2.3517 9 6 -0.1396 5.8688 2.3225 10 6 1.1132 6.6587 2.7395 11 6 2.3115 5.7863 2.3277 12 1 2.6956 6.0911 1.3543 13 7 3.3569 5.8801 3.3523 14 6 3.9873 7.0329 3.7383 15 1 3.7243 7.9728 3.2762 16 6 4.9643 6.9931 4.7235 17 7 5.2852 5.8474 5.2863 18 14 5.8247 8.5654 5.2495 19 1 4.8222 9.5256 5.7771 20 1 6.8187 8.2554 6.3083 21 1 6.5176 9.1653 4.0811 22 6 3.6041 4.5218 3.8952 23 6 2.3645 3.6737 3.5544 24 6 2.0741 -0.7803 -1.2190 25 6 3.3233 -1.4656 -0.6223 26 7 3.0582 -1.5785 0.8168 27 6 2.0594 -0.7621 1.1948 28 8 1.6427 -0.6531 2.3285 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8835 32 1 1.2129 1.9280 1.7571 33 1 1.9029 4.1392 0.1412 34 1 3.3633 3.5958 1.0016 35 1 -0.1603 3.8536 1.5021 36 1 -0.0782 3.9404 3.2845 37 1 -0.9533 6.0575 3.0227 38 1 -0.4401 6.1464 1.3122 39 1 1.1163 6.8183 3.8177 40 1 1.1464 7.6150 2.2174 41 1 5.9681 5.8195 5.9745 42 1 3.7394 4.5686 4.9758 43 1 4.4901 4.0941 3.4260 44 1 1.6370 3.7172 4.3649 45 1 2.6514 2.6417 3.3522 46 1 1.3508 -1.5193 -1.5635 47 1 2.3497 -0.1009 -2.0256 48 1 4.2084 -0.8537 -0.7959 49 1 3.4561 -2.4549 -1.0601 50 1 3.5414 -2.1668 1.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107547820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:25 Heat of formation + Delta-G solvation = -54.079775 kcal Electronic energy + Delta-G solvation = -30947.450264 eV Core-core repulsion = 26974.484550 eV Total energy + Delta-G solvation = -3972.965715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40921 -39.69087 -38.57324 -36.58004 -34.74579 -33.95790 -33.41761 -31.73072 -30.36315 -29.09270 -27.84857 -26.72237 -25.82124 -24.57755 -23.80874 -22.49995 -21.78294 -20.16073 -19.94811 -19.50314 -18.26013 -17.68485 -17.49583 -16.78297 -15.78770 -15.63120 -15.47206 -14.98307 -14.71859 -14.63014 -14.30369 -14.03062 -13.87134 -13.71954 -13.48626 -13.17737 -13.00793 -12.82637 -12.66590 -12.50963 -12.44092 -11.77940 -11.68771 -11.56993 -11.40767 -11.20181 -11.08943 -10.79346 -10.72341 -10.67087 -10.24911 -10.17732 -10.08609 -10.01660 -9.77638 -9.73003 -9.50570 -9.44720 -9.39518 -8.90682 -8.58200 -6.77964 -5.62610 -3.00535 2.12399 2.55952 3.03173 3.23934 3.43405 3.47760 3.48851 3.89775 4.08239 4.38381 4.52640 4.67073 4.70819 4.95384 4.98599 5.00464 5.05632 5.19285 5.32828 5.35260 5.53836 5.54625 5.55597 5.59386 5.70600 5.75842 5.77497 5.89296 5.95696 6.06246 6.09825 6.14841 6.20377 6.35441 6.42536 6.43802 6.48249 6.54067 6.65806 6.67843 6.74783 6.81801 6.90715 7.15433 7.51707 7.57447 7.70467 7.89179 7.92460 8.16103 8.36817 9.25668 9.88322 10.54669 11.44576 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003272 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.720392 B = 8554.956912 C = 9321.250731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.531 3.469 4 O -0.533 6.533 5 N -0.711 5.711 6 C 0.141 3.859 7 C -0.079 4.079 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.132 4.132 11 C 0.175 3.825 12 H 0.036 0.964 13 N -0.595 5.595 14 C -0.219 4.219 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.160 3.840 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.098 3.902 26 N -0.728 5.728 27 C 0.531 3.469 28 O -0.515 6.515 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.251 0.749 42 H 0.093 0.907 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -15.465 -12.434 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 C 0.315 3.685 4 O -0.410 6.410 5 N -0.362 5.362 6 C 0.018 3.982 7 C -0.080 4.080 8 C -0.148 4.148 9 C -0.156 4.156 10 C -0.172 4.172 11 C 0.067 3.933 12 H 0.054 0.946 13 N -0.319 5.319 14 C -0.347 4.347 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C 0.036 3.964 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.026 4.026 26 N -0.383 5.383 27 C 0.315 3.685 28 O -0.390 6.390 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.031 0.969 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.129 0.871 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.288 -14.956 -12.388 21.977 hybrid contribution 0.584 0.356 0.864 1.102 sum -9.704 -14.600 -11.524 20.979 Atomic orbital electron populations 1.21669 0.89597 1.03564 1.03723 1.21646 0.99592 0.94421 0.97085 1.19617 0.80461 0.85823 0.82628 1.90697 1.38165 1.76499 1.35686 1.46064 1.53244 1.13388 1.23507 1.21403 0.99437 0.79823 0.97551 1.21761 0.94931 0.96889 0.94440 1.22067 0.94263 0.97225 1.01270 1.22027 0.98330 0.94926 1.00343 1.22629 0.94310 0.98124 1.02112 1.21043 0.89246 0.90137 0.92892 0.94614 1.44618 1.41871 1.04292 1.41134 1.18960 1.14163 0.85593 1.15971 0.90522 1.24767 0.99452 0.96985 0.99370 1.69861 1.34490 1.22995 1.29683 0.86204 0.79160 0.82460 0.77979 1.21238 1.21684 1.21281 1.21678 0.90864 0.82515 1.01365 1.22806 1.00315 0.98703 0.95219 1.22704 0.96614 0.99288 0.96923 1.22150 0.98967 1.01673 0.79803 1.46139 1.37045 1.44034 1.11112 1.20326 0.79749 0.79615 0.88826 1.90789 1.61099 1.65990 1.21139 0.90751 0.91056 0.90894 0.75795 0.91376 0.90905 0.92261 0.91760 0.92404 0.92726 0.90877 0.92916 0.93802 0.88935 0.96886 0.91990 0.92396 0.89209 0.87145 0.90341 0.89812 0.74713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.33 37.16 0.31 -0.75 16 2 C -0.12 -1.25 0.74 -155.67 -0.12 -1.37 16 3 C 0.53 7.31 6.55 -10.98 -0.07 7.24 16 4 O -0.53 -8.74 15.46 5.56 0.09 -8.65 16 5 N -0.71 -10.04 4.44 -60.29 -0.27 -10.30 16 6 C 0.14 2.29 4.37 -4.04 -0.02 2.27 16 7 C -0.08 -1.35 0.60 -153.28 -0.09 -1.45 16 8 C -0.11 -1.58 5.58 -26.19 -0.15 -1.73 16 9 C -0.12 -1.72 6.81 -25.89 -0.18 -1.90 16 10 C -0.13 -2.42 6.15 -25.85 -0.16 -2.58 16 11 C 0.18 3.59 3.50 -66.89 -0.23 3.35 16 12 H 0.04 0.76 7.83 -51.93 -0.41 0.35 16 13 N -0.59 -15.02 3.08 -162.35 -0.50 -15.52 16 14 C -0.22 -6.05 9.87 -15.06 -0.15 -6.20 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -27.21 10.23 55.49 0.57 -26.64 16 18 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.16 3.94 5.80 -2.49 -0.01 3.92 16 23 C -0.13 -2.53 5.84 -25.64 -0.15 -2.68 16 24 C -0.12 -0.90 6.05 -25.10 -0.15 -1.05 16 25 C 0.10 0.70 7.78 -3.12 -0.02 0.68 16 26 N -0.73 -6.66 6.24 -59.20 -0.37 -7.03 16 27 C 0.53 6.37 7.08 -10.86 -0.08 6.29 16 28 O -0.52 -7.84 17.69 5.56 0.10 -7.74 16 29 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 32 H 0.41 5.47 7.00 -40.82 -0.29 5.19 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 0.74 7.40 -51.93 -0.38 0.36 16 36 H 0.06 0.90 7.22 -51.93 -0.37 0.53 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.52 8.00 -51.93 -0.42 1.10 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.09 2.56 6.20 -51.93 -0.32 2.24 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 1.16 7.34 -51.92 -0.38 0.78 16 45 H 0.06 1.06 7.23 -51.93 -0.38 0.69 16 46 H 0.09 0.47 7.92 -51.93 -0.41 0.05 16 47 H 0.11 0.95 6.91 -51.93 -0.36 0.59 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.41 3.14 8.96 -40.82 -0.37 2.78 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -33.20 385.84 -9.22 -42.41 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.25 Total: 6.69 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.37 Total: 3.68 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.57 Total: -59.49 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.20 -9.22 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107547820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.667 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds