Wall clock time and date at job start Tue Mar 31 2020 19:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 110.43446 * 2 1 4 4 O 1.21278 * 119.99424 * 241.08658 * 3 2 1 5 5 N 1.34773 * 120.00117 * 61.08127 * 3 2 1 6 6 C 1.46500 * 119.99865 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47148 * 179.97438 * 6 5 3 8 8 C 1.53293 * 111.27947 * 299.91968 * 7 6 5 9 9 C 1.53753 * 107.16772 * 242.26930 * 8 7 6 10 10 C 1.53854 * 105.93684 * 340.30158 * 9 8 7 11 11 C 1.53834 * 105.70003 * 27.38203 * 10 9 8 12 12 H 1.08994 * 110.79605 * 95.89351 * 11 10 9 13 13 N 1.46676 * 109.39041 * 218.30448 * 11 10 9 14 14 C 1.36939 * 125.36417 * 300.15272 * 13 11 10 15 15 H 1.07991 * 120.00085 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99646 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99878 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47087 * 60.00363 * 18 16 14 20 20 H 1.48500 * 109.47227 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47450 * 300.00241 * 18 16 14 22 22 C 1.48351 * 108.41485 * 119.90077 * 13 11 10 23 23 C 1.54013 * 106.80328 * 340.23064 * 22 13 11 24 24 C 1.54624 * 110.60262 * 237.37590 * 2 1 3 25 25 C 1.54478 * 101.76513 * 216.46750 * 24 2 1 26 26 N 1.46763 * 105.47473 * 25.42052 * 25 24 2 27 27 C 1.34420 * 111.29786 * 342.97639 * 26 25 24 28 28 O 1.21279 * 124.94218 * 180.36773 * 27 26 25 29 29 H 1.09008 * 109.47003 * 60.70518 * 1 2 3 30 30 H 1.09003 * 109.47289 * 180.70387 * 1 2 3 31 31 H 1.08993 * 109.47709 * 300.70585 * 1 2 3 32 32 H 0.96996 * 120.00030 * 0.02562 * 5 3 2 33 33 H 1.08994 * 109.47203 * 59.99719 * 6 5 3 34 34 H 1.09004 * 109.47002 * 299.99997 * 6 5 3 35 35 H 1.09002 * 109.91175 * 2.57095 * 8 7 6 36 36 H 1.08996 * 109.91678 * 123.85198 * 8 7 6 37 37 H 1.08997 * 110.62286 * 220.91760 * 9 8 7 38 38 H 1.08999 * 109.64142 * 99.16931 * 9 8 7 39 39 H 1.09002 * 110.21897 * 268.29780 * 10 9 8 40 40 H 1.09002 * 110.21133 * 146.46003 * 10 9 8 41 41 H 0.96998 * 119.99735 * 179.97438 * 17 16 14 42 42 H 1.09004 * 110.13458 * 220.74158 * 22 13 11 43 43 H 1.08999 * 109.70272 * 99.47862 * 22 13 11 44 44 H 1.09008 * 110.52461 * 268.53057 * 23 22 13 45 45 H 1.09000 * 110.52526 * 145.79513 * 23 22 13 46 46 H 1.08997 * 110.96680 * 334.59095 * 24 2 1 47 47 H 1.09002 * 110.96733 * 98.34989 * 24 2 1 48 48 H 1.08997 * 110.24996 * 266.41237 * 25 24 2 49 49 H 1.09000 * 110.24267 * 144.41579 * 25 24 2 50 50 H 0.96998 * 124.35282 * 162.96057 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7437 1.8031 -0.9194 5 7 1.7625 2.2408 1.0216 6 6 2.2736 3.6137 1.0213 7 6 1.7976 4.3354 2.2836 8 6 0.2670 4.3863 2.3517 9 6 -0.1396 5.8688 2.3225 10 6 1.1132 6.6587 2.7395 11 6 2.3115 5.7863 2.3277 12 1 2.6956 6.0911 1.3543 13 7 3.3569 5.8801 3.3523 14 6 3.9873 7.0329 3.7383 15 1 3.7243 7.9728 3.2762 16 6 4.9643 6.9931 4.7235 17 7 5.2852 5.8474 5.2863 18 14 5.8247 8.5654 5.2495 19 1 4.8222 9.5256 5.7771 20 1 6.8187 8.2554 6.3083 21 1 6.5176 9.1653 4.0811 22 6 3.6041 4.5218 3.8952 23 6 2.3645 3.6737 3.5544 24 6 2.0741 -0.7803 -1.2190 25 6 3.3233 -1.4656 -0.6223 26 7 3.0582 -1.5785 0.8168 27 6 2.0594 -0.7621 1.1948 28 8 1.6427 -0.6531 2.3285 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8835 32 1 1.2129 1.9280 1.7571 33 1 1.9029 4.1392 0.1412 34 1 3.3633 3.5958 1.0016 35 1 -0.1603 3.8536 1.5021 36 1 -0.0782 3.9404 3.2845 37 1 -0.9533 6.0575 3.0227 38 1 -0.4401 6.1464 1.3122 39 1 1.1163 6.8183 3.8177 40 1 1.1464 7.6150 2.2174 41 1 5.9681 5.8195 5.9745 42 1 3.7394 4.5686 4.9758 43 1 4.4901 4.0941 3.4260 44 1 1.6370 3.7172 4.3649 45 1 2.6514 2.6417 3.3522 46 1 1.3508 -1.5193 -1.5635 47 1 2.3497 -0.1009 -2.0256 48 1 4.2084 -0.8537 -0.7959 49 1 3.4561 -2.4549 -1.0601 50 1 3.5414 -2.1668 1.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107547820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:24 Heat of formation + Delta-G solvation = -77.837678 kcal Electronic energy + Delta-G solvation = -30948.480484 eV Core-core repulsion = 26974.484550 eV Total energy + Delta-G solvation = -3973.995935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.33060 -41.09826 -39.75344 -37.47526 -36.29748 -35.45680 -34.24838 -33.50723 -32.07958 -29.91137 -29.20960 -28.43782 -26.64778 -25.91353 -25.64818 -23.44067 -22.67225 -21.94521 -21.30577 -20.64705 -19.61998 -18.89495 -18.51844 -18.34874 -16.93418 -16.87891 -16.70104 -16.63880 -16.02131 -15.76769 -15.60700 -15.21420 -14.93358 -14.75927 -14.71552 -14.64020 -14.38619 -14.16848 -13.59453 -13.48170 -13.39212 -13.22716 -13.17768 -12.93419 -12.85297 -12.62695 -12.42689 -12.30315 -12.13039 -12.07587 -11.98644 -11.63662 -11.60513 -11.46108 -11.34017 -11.12815 -11.02233 -10.80954 -10.71119 -10.16607 -10.14720 -8.86191 -7.79017 -5.18843 1.15127 1.44246 1.47607 1.53671 1.54219 2.09271 2.35932 2.49795 3.15160 3.32652 3.35294 3.44440 3.59434 3.63451 3.66972 3.86712 3.94666 4.09135 4.24730 4.33844 4.37926 4.38814 4.49925 4.55548 4.66275 4.68772 4.69901 4.75694 4.77649 4.79413 4.94571 5.00145 5.03304 5.10499 5.13852 5.15792 5.17664 5.26302 5.34967 5.36634 5.44355 5.50824 5.55515 5.67266 5.70162 5.80761 5.90740 6.26570 6.39561 7.03857 7.10028 7.11720 7.80053 8.46120 9.26889 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003272 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.720392 B = 8554.956912 C = 9321.250731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C 0.528 3.472 4 O -0.563 6.563 5 N -0.707 5.707 6 C 0.152 3.848 7 C -0.067 4.067 8 C -0.103 4.103 9 C -0.108 4.108 10 C -0.127 4.127 11 C 0.161 3.839 12 H 0.028 0.972 13 N -0.614 5.614 14 C -0.227 4.227 15 H 0.082 0.918 16 C -0.070 4.070 17 N -0.953 5.953 18 Si 0.977 3.023 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.280 1.280 22 C 0.167 3.833 23 C -0.116 4.116 24 C -0.112 4.112 25 C 0.095 3.905 26 N -0.720 5.720 27 C 0.521 3.479 28 O -0.555 6.555 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.244 0.756 42 H 0.057 0.943 43 H -0.025 1.025 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.122 0.878 50 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 -16.478 -14.298 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 C 0.314 3.686 4 O -0.441 6.441 5 N -0.359 5.359 6 C 0.028 3.972 7 C -0.067 4.067 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.166 4.166 11 C 0.054 3.946 12 H 0.046 0.954 13 N -0.338 5.338 14 C -0.356 4.356 15 H 0.099 0.901 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.805 3.195 19 H -0.201 1.201 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.042 3.958 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.029 4.029 26 N -0.375 5.375 27 C 0.305 3.695 28 O -0.433 6.433 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.075 0.925 43 H -0.007 1.007 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.083 0.917 49 H 0.140 0.860 50 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -12.858 -15.987 -14.296 25.005 hybrid contribution 1.470 0.658 1.383 2.123 sum -11.388 -15.328 -12.913 23.052 Atomic orbital electron populations 1.21735 0.87665 1.04962 1.04075 1.21700 1.01114 0.91802 0.97707 1.20247 0.79645 0.87040 0.81718 1.90685 1.39312 1.77421 1.36721 1.45984 1.53269 1.12589 1.24017 1.21103 0.97308 0.81327 0.97430 1.21659 0.97240 0.94390 0.93459 1.22051 0.91218 0.97738 1.03071 1.21987 0.96596 0.93889 1.02089 1.22475 0.95284 0.98567 1.00287 1.21335 0.88962 0.93115 0.91164 0.95423 1.44864 1.42918 1.03757 1.42263 1.19335 1.14047 0.86679 1.15586 0.90062 1.25604 1.00644 1.00006 0.99924 1.70119 1.34975 1.24957 1.30208 0.85170 0.77964 0.78983 0.77354 1.20107 1.22223 1.20625 1.21412 0.92142 0.83476 0.98741 1.22613 0.97980 0.98057 0.96781 1.22802 0.97343 0.99475 0.95385 1.22356 0.98324 1.03613 0.78593 1.46236 1.35903 1.43067 1.12265 1.20665 0.80163 0.79966 0.88669 1.90763 1.62548 1.67396 1.22631 0.89328 0.89160 0.91632 0.75144 0.90378 0.94572 0.89450 0.90858 0.90516 0.90440 0.93668 0.92581 0.94623 0.92484 1.00722 0.91016 0.91703 0.85795 0.87980 0.91673 0.85981 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.33 71.98 0.60 -1.12 16 2 C -0.12 -2.18 0.74 -52.93 -0.04 -2.22 16 3 C 0.53 14.00 6.55 87.66 0.57 14.58 16 4 O -0.56 -18.18 15.46 -3.02 -0.05 -18.23 16 5 N -0.71 -19.31 4.44 -463.07 -2.06 -21.37 16 6 C 0.15 4.92 4.37 86.38 0.38 5.30 16 7 C -0.07 -2.24 0.60 -51.39 -0.03 -2.27 16 8 C -0.10 -2.63 5.58 30.95 0.17 -2.46 16 9 C -0.11 -2.78 6.81 31.14 0.21 -2.56 16 10 C -0.13 -4.53 6.15 31.16 0.19 -4.34 16 11 C 0.16 6.66 3.50 45.57 0.16 6.82 16 12 H 0.03 1.20 7.83 -2.39 -0.02 1.18 16 13 N -0.61 -32.25 3.08 -667.54 -2.06 -34.31 16 14 C -0.23 -13.00 9.87 84.03 0.83 -12.17 16 15 H 0.08 4.44 7.83 -2.92 -0.02 4.42 16 16 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 17 N -0.95 -59.06 10.23 21.65 0.22 -58.84 16 18 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 C 0.17 8.71 5.80 86.37 0.50 9.21 16 23 C -0.12 -4.53 5.84 31.30 0.18 -4.35 16 24 C -0.11 -1.40 6.05 31.65 0.19 -1.21 16 25 C 0.09 1.13 7.78 86.83 0.68 1.80 16 26 N -0.72 -12.03 6.24 -459.81 -2.87 -14.90 16 27 C 0.52 11.83 7.08 87.90 0.62 12.45 16 28 O -0.56 -16.56 17.69 -3.03 -0.05 -16.62 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.00 7.70 -2.39 -0.02 0.98 16 32 H 0.41 10.50 7.00 -92.71 -0.65 9.85 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.81 7.40 -2.39 -0.02 1.79 16 36 H 0.07 1.80 7.22 -2.39 -0.02 1.78 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.86 8.00 -2.39 -0.02 1.85 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.06 3.37 6.20 -2.38 -0.01 3.36 16 43 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 44 H 0.07 2.67 7.34 -2.38 -0.02 2.65 16 45 H 0.06 2.43 7.23 -2.39 -0.02 2.42 16 46 H 0.12 0.73 7.92 -2.39 -0.02 0.71 16 47 H 0.10 1.53 6.91 -2.39 -0.02 1.51 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.42 5.84 8.96 -92.71 -0.83 5.01 16 Total: -1.00 -77.16 385.84 0.33 -76.84 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.52 Total: 24.44 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.68 Total: 13.87 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -6.76 Total: -129.42 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.10 Total: -34.84 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.16 0.33 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107547820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.002 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds