Wall clock time and date at job start Tue Mar 31 2020 19:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 115.55199 * 2 1 4 4 C 1.52998 * 117.49768 * 214.29193 * 2 1 3 5 5 C 1.52996 * 60.00132 * 252.51345 * 4 2 1 6 6 H 1.09004 * 117.51624 * 252.52187 * 5 4 2 7 7 C 1.50692 * 117.50395 * 107.49425 * 5 4 2 8 8 O 1.21284 * 119.99656 * 291.37950 * 7 5 4 9 9 N 1.34773 * 120.00180 * 111.37455 * 7 5 4 10 10 C 1.46507 * 119.99875 * 180.02562 * 9 7 5 11 11 H 1.08994 * 110.67334 * 37.01844 * 10 9 7 12 12 C 1.55516 * 110.70674 * 159.98711 * 10 9 7 13 13 C 1.55846 * 103.45974 * 118.39833 * 12 10 9 14 14 H 1.08998 * 116.15167 * 159.40994 * 13 12 10 15 15 C 1.55853 * 105.03156 * 288.45910 * 13 12 10 16 16 C 1.54838 * 103.65694 * 71.80664 * 15 13 12 17 17 C 1.55851 * 103.51879 * 359.92166 * 16 15 13 18 18 H 1.09001 * 115.58063 * 158.89419 * 17 16 15 19 19 N 1.50643 * 101.02835 * 32.99606 * 17 16 15 20 20 C 1.46894 * 111.00441 * 62.34725 * 19 17 16 21 21 C 1.50697 * 109.47412 * 170.00200 * 20 19 17 22 22 O 1.21294 * 120.00002 * 359.97438 * 21 20 19 23 23 N 1.34776 * 120.00112 * 180.02562 * 21 20 19 24 24 C 1.37097 * 120.00319 * 179.97438 * 23 21 20 25 25 H 1.08001 * 119.99654 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00632 * 180.02562 * 24 23 21 27 27 N 1.31402 * 120.00348 * 180.02562 * 26 24 23 28 28 Si 1.86806 * 119.99514 * 359.97438 * 26 24 23 29 29 H 1.48503 * 109.46900 * 90.00178 * 28 26 24 30 30 H 1.48496 * 109.47146 * 210.00160 * 28 26 24 31 31 H 1.48502 * 109.47322 * 330.00470 * 28 26 24 32 32 H 1.09004 * 109.47327 * 274.32659 * 1 2 3 33 33 H 1.09001 * 109.47415 * 34.33153 * 1 2 3 34 34 H 1.09003 * 109.47098 * 154.33181 * 1 2 3 35 35 H 1.08995 * 109.47241 * 205.67330 * 3 2 1 36 36 H 1.09007 * 109.46745 * 325.67007 * 3 2 1 37 37 H 1.09001 * 109.46824 * 85.66783 * 3 2 1 38 38 H 1.09006 * 117.49630 * 145.01832 * 4 2 1 39 39 H 1.09007 * 117.50062 * 0.02562 * 4 2 1 40 40 H 0.96996 * 120.00065 * 0.02562 * 9 7 5 41 41 H 1.08995 * 110.48091 * 359.97438 * 12 10 9 42 42 H 1.09001 * 110.80356 * 236.96303 * 12 10 9 43 43 H 1.08998 * 110.61238 * 313.22087 * 15 13 12 44 44 H 1.08995 * 110.61056 * 190.38659 * 15 13 12 45 45 H 1.08998 * 110.61332 * 118.43216 * 16 15 13 46 46 H 1.09003 * 110.60937 * 241.26010 * 16 15 13 47 47 H 1.09006 * 109.47160 * 290.00256 * 20 19 17 48 48 H 1.09000 * 109.47166 * 49.99419 * 20 19 17 49 49 H 0.97000 * 120.00113 * 0.02562 * 23 21 20 50 50 H 0.97009 * 119.99929 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1212 -0.7646 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3720 -2.1401 1.4615 8 8 0.1638 -2.0528 1.4019 9 7 1.9416 -3.1489 2.1503 10 6 1.1012 -4.1402 2.8267 11 1 0.2138 -4.3611 2.2338 12 6 1.9056 -5.4403 3.1117 13 6 1.8836 -5.5470 4.6664 14 1 2.0764 -6.5356 5.0828 15 6 2.8287 -4.4115 5.1629 16 6 2.0258 -3.1180 4.8805 17 6 0.7012 -3.6421 4.2483 18 1 -0.1463 -2.9583 4.2968 19 7 0.5328 -4.9506 4.9754 20 6 0.3742 -4.7338 6.4196 21 6 -0.0341 -6.0256 7.0796 22 8 -0.1792 -7.0281 6.4125 23 7 -0.2390 -6.0666 8.4111 24 6 -0.6110 -7.2416 9.0116 25 1 -0.7393 -8.1345 8.4176 26 6 -0.8228 -7.2839 10.3842 27 7 -1.1788 -8.4103 10.9597 28 14 -0.6000 -5.7397 11.4115 29 1 -1.8882 -5.0046 11.4859 30 1 -0.1642 -6.1146 12.7807 31 1 0.4294 -4.8722 10.7845 32 1 -0.3634 0.0775 1.0248 33 1 -0.3634 0.8486 -0.5796 34 1 -0.3633 -0.9263 -0.4452 35 1 3.1822 1.3087 -0.4452 36 1 1.5809 2.0742 -0.5796 37 1 2.2766 1.7416 1.0248 38 1 3.1715 -0.8755 -1.2680 39 1 1.6111 -1.8587 -1.2681 40 1 2.9079 -3.2185 2.1983 41 1 2.9285 -5.3433 2.7480 42 1 1.4174 -6.3043 2.6609 43 1 3.7616 -4.4148 4.5992 44 1 3.0258 -4.5155 6.2298 45 1 1.8228 -2.5822 5.8078 46 1 2.5621 -2.4789 4.1790 47 1 1.3196 -4.3930 6.8418 48 1 -0.3935 -3.9793 6.5916 49 1 -0.1241 -5.2646 8.9445 50 1 -1.3263 -8.4398 11.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109153801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:54 Heat of formation + Delta-G solvation = -9.766445 kcal Electronic energy + Delta-G solvation = -29668.694481 eV Core-core repulsion = 25697.650337 eV Total energy + Delta-G solvation = -3971.044144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.31643 -40.11249 -38.08337 -37.34098 -34.65195 -33.87682 -31.70725 -31.22277 -30.28349 -29.82780 -28.87572 -27.73147 -26.62578 -24.57343 -23.79189 -22.15828 -20.96662 -20.24088 -19.62882 -19.35985 -19.11068 -18.17299 -17.40566 -16.37867 -16.14055 -16.06338 -15.24028 -15.17548 -14.78378 -14.59934 -14.55859 -14.09147 -13.85245 -13.65105 -13.33702 -13.14198 -13.00138 -12.83102 -12.55698 -12.52004 -12.27492 -12.15755 -12.08187 -12.00968 -11.82129 -11.58095 -11.54651 -11.33257 -11.12007 -11.00550 -10.83589 -10.57622 -10.57112 -10.23947 -10.20707 -9.94745 -9.65522 -9.52247 -9.16686 -8.64443 -8.16086 -8.13029 -6.27660 -3.78644 2.28948 2.86179 3.03878 3.08859 3.16514 3.40291 3.78675 3.90981 4.12866 4.26513 4.32768 4.41298 4.45737 4.49746 4.66011 4.74455 4.78208 4.95395 5.00156 5.13014 5.17997 5.20266 5.25059 5.26052 5.29792 5.32532 5.35623 5.52012 5.56099 5.58938 5.59582 5.68846 5.72424 5.76177 5.77197 5.89557 5.90219 5.95026 5.97765 5.99639 6.09489 6.25512 6.28448 6.36897 6.78680 7.08039 7.31768 7.62304 8.07802 8.18584 8.64815 8.99609 9.46841 9.89312 10.85674 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.511095 B =12152.813649 C =12521.118774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.120 0.880 7 C 0.541 3.459 8 O -0.529 6.529 9 N -0.716 5.716 10 C 0.151 3.849 11 H 0.099 0.901 12 C -0.116 4.116 13 C 0.056 3.944 14 H 0.123 0.877 15 C -0.158 4.158 16 C -0.153 4.153 17 C 0.037 3.963 18 H 0.114 0.886 19 N -0.462 5.462 20 C 0.022 3.978 21 C 0.457 3.543 22 O -0.558 6.558 23 N -0.595 5.595 24 C -0.302 4.302 25 H 0.119 0.881 26 C 0.040 3.960 27 N -0.883 5.883 28 Si 0.879 3.121 29 H -0.271 1.271 30 H -0.277 1.277 31 H -0.271 1.271 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.398 0.602 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.369 0.631 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.423 19.376 -20.285 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.185 4.185 5 C -0.211 4.211 6 H 0.138 0.862 7 C 0.328 3.672 8 O -0.406 6.406 9 N -0.367 5.367 10 C 0.046 3.954 11 H 0.117 0.883 12 C -0.154 4.154 13 C -0.053 4.053 14 H 0.141 0.859 15 C -0.197 4.197 16 C -0.192 4.192 17 C -0.073 4.073 18 H 0.132 0.868 19 N -0.185 5.185 20 C -0.110 4.110 21 C 0.242 3.758 22 O -0.438 6.438 23 N -0.235 5.235 24 C -0.431 4.431 25 H 0.137 0.863 26 C -0.163 4.163 27 N -0.524 5.524 28 Si 0.706 3.294 29 H -0.196 1.196 30 H -0.203 1.203 31 H -0.196 1.196 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.202 0.798 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.841 18.246 -20.744 29.678 hybrid contribution 1.481 1.608 1.667 2.749 sum 12.322 19.854 -19.077 30.166 Atomic orbital electron populations 1.21362 0.90509 1.01453 1.02733 1.21587 0.96097 0.90477 1.01232 1.21404 0.99908 0.93861 1.02233 1.23214 1.02833 1.01675 0.90759 1.22379 1.01954 1.01032 0.95779 0.86213 1.19667 0.88221 0.81187 0.78145 1.90729 1.14447 1.74246 1.61130 1.46107 1.10036 1.27874 1.52728 1.21962 0.94179 0.86981 0.92232 0.88332 1.22976 0.99521 0.97074 0.95877 1.24506 0.87551 0.98565 0.94634 0.85881 1.23348 0.99090 0.95336 1.01923 1.23258 0.97220 0.97726 1.01009 1.24813 0.96430 0.91999 0.94082 0.86789 1.67421 1.29158 1.14629 1.07253 1.22148 1.01368 0.97870 0.89635 1.19630 0.84025 0.89781 0.82350 1.90557 1.54557 1.35826 1.62908 1.42215 1.63233 1.11413 1.06652 1.19416 1.42686 0.89144 0.91824 0.86318 1.25025 0.97661 0.97074 0.96501 1.69620 1.46360 1.25091 1.11299 0.86682 0.78806 0.83074 0.80862 1.19647 1.20252 1.19616 0.91300 0.93319 0.91626 0.92341 0.91588 0.91969 0.87944 0.88222 0.76732 0.90954 0.89657 0.91226 0.91174 0.91631 0.91062 0.92084 0.89536 0.79848 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 8.09 37.16 0.30 -0.66 16 2 C -0.09 -0.70 2.70 -154.51 -0.42 -1.12 16 3 C -0.12 -0.66 9.85 37.16 0.37 -0.29 16 4 C -0.15 -0.97 9.53 -26.73 -0.25 -1.22 16 5 C -0.19 -1.41 5.91 -91.78 -0.54 -1.95 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C 0.54 5.51 7.59 -10.99 -0.08 5.42 16 8 O -0.53 -7.27 12.84 5.55 0.07 -7.20 16 9 N -0.72 -6.25 3.64 -51.05 -0.19 -6.44 16 10 C 0.15 1.72 3.08 -65.07 -0.20 1.52 16 11 H 0.10 1.34 7.71 -51.93 -0.40 0.94 16 12 C -0.12 -1.27 6.23 -23.87 -0.15 -1.42 16 13 C 0.06 0.77 4.57 -62.44 -0.29 0.48 16 14 H 0.12 1.98 7.96 -51.93 -0.41 1.57 16 15 C -0.16 -1.74 5.61 -24.24 -0.14 -1.87 16 16 C -0.15 -1.62 5.52 -24.24 -0.13 -1.75 16 17 C 0.04 0.47 4.80 -62.56 -0.30 0.17 16 18 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 19 N -0.46 -7.40 5.09 -206.84 -1.05 -8.46 16 20 C 0.02 0.38 4.82 -4.98 -0.02 0.35 16 21 C 0.46 10.54 7.71 -10.99 -0.08 10.45 16 22 O -0.56 -15.13 15.58 5.55 0.09 -15.04 16 23 N -0.59 -14.39 5.09 -10.96 -0.06 -14.45 16 24 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 25 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 26 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 27 N -0.88 -26.08 13.96 55.50 0.77 -25.30 16 28 Si 0.88 19.64 27.74 -169.99 -4.71 14.92 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 31 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 32 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 33 H 0.05 0.38 7.92 -51.93 -0.41 -0.03 16 34 H 0.06 0.70 7.01 -51.93 -0.36 0.34 16 35 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 36 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.40 2.49 8.03 -40.82 -0.33 2.16 16 41 H 0.07 0.60 7.35 -51.93 -0.38 0.22 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 44 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 45 H 0.06 0.71 7.63 -51.93 -0.40 0.32 16 46 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 47 H 0.06 0.93 5.10 -51.93 -0.26 0.66 16 48 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 49 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 50 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -34.11 387.61 -9.43 -43.54 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.00 Total: 12.25 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.19 Total: 0.33 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.52 Total: -54.65 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.16 Total: -22.24 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.11 -9.43 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109153801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.776 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds