Wall clock time and date at job start Tue Mar 31 2020 19:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 115.55199 * 2 1 4 4 C 1.52998 * 117.49768 * 214.29193 * 2 1 3 5 5 C 1.52996 * 60.00132 * 252.51345 * 4 2 1 6 6 H 1.09004 * 117.51624 * 252.52187 * 5 4 2 7 7 C 1.50692 * 117.50395 * 107.49425 * 5 4 2 8 8 O 1.21284 * 119.99656 * 291.37950 * 7 5 4 9 9 N 1.34773 * 120.00180 * 111.37455 * 7 5 4 10 10 C 1.46507 * 119.99875 * 180.02562 * 9 7 5 11 11 H 1.08994 * 110.67334 * 37.01844 * 10 9 7 12 12 C 1.55516 * 110.70674 * 159.98711 * 10 9 7 13 13 C 1.55846 * 103.45974 * 118.39833 * 12 10 9 14 14 H 1.08998 * 116.15167 * 159.40994 * 13 12 10 15 15 C 1.55853 * 105.03156 * 288.45910 * 13 12 10 16 16 C 1.54838 * 103.65694 * 71.80664 * 15 13 12 17 17 C 1.55851 * 103.51879 * 359.92166 * 16 15 13 18 18 H 1.09001 * 115.58063 * 158.89419 * 17 16 15 19 19 N 1.50643 * 101.02835 * 32.99606 * 17 16 15 20 20 C 1.46894 * 111.00441 * 62.34725 * 19 17 16 21 21 C 1.50697 * 109.47412 * 170.00200 * 20 19 17 22 22 O 1.21294 * 120.00002 * 359.97438 * 21 20 19 23 23 N 1.34776 * 120.00112 * 180.02562 * 21 20 19 24 24 C 1.37097 * 120.00319 * 179.97438 * 23 21 20 25 25 H 1.08001 * 119.99654 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00632 * 180.02562 * 24 23 21 27 27 N 1.31402 * 120.00348 * 180.02562 * 26 24 23 28 28 Si 1.86806 * 119.99514 * 359.97438 * 26 24 23 29 29 H 1.48503 * 109.46900 * 90.00178 * 28 26 24 30 30 H 1.48496 * 109.47146 * 210.00160 * 28 26 24 31 31 H 1.48502 * 109.47322 * 330.00470 * 28 26 24 32 32 H 1.09004 * 109.47327 * 274.32659 * 1 2 3 33 33 H 1.09001 * 109.47415 * 34.33153 * 1 2 3 34 34 H 1.09003 * 109.47098 * 154.33181 * 1 2 3 35 35 H 1.08995 * 109.47241 * 205.67330 * 3 2 1 36 36 H 1.09007 * 109.46745 * 325.67007 * 3 2 1 37 37 H 1.09001 * 109.46824 * 85.66783 * 3 2 1 38 38 H 1.09006 * 117.49630 * 145.01832 * 4 2 1 39 39 H 1.09007 * 117.50062 * 0.02562 * 4 2 1 40 40 H 0.96996 * 120.00065 * 0.02562 * 9 7 5 41 41 H 1.08995 * 110.48091 * 359.97438 * 12 10 9 42 42 H 1.09001 * 110.80356 * 236.96303 * 12 10 9 43 43 H 1.08998 * 110.61238 * 313.22087 * 15 13 12 44 44 H 1.08995 * 110.61056 * 190.38659 * 15 13 12 45 45 H 1.08998 * 110.61332 * 118.43216 * 16 15 13 46 46 H 1.09003 * 110.60937 * 241.26010 * 16 15 13 47 47 H 1.09006 * 109.47160 * 290.00256 * 20 19 17 48 48 H 1.09000 * 109.47166 * 49.99419 * 20 19 17 49 49 H 0.97000 * 120.00113 * 0.02562 * 23 21 20 50 50 H 0.97009 * 119.99929 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1212 -0.7646 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3720 -2.1401 1.4615 8 8 0.1638 -2.0528 1.4019 9 7 1.9416 -3.1489 2.1503 10 6 1.1012 -4.1402 2.8267 11 1 0.2138 -4.3611 2.2338 12 6 1.9056 -5.4403 3.1117 13 6 1.8836 -5.5470 4.6664 14 1 2.0764 -6.5356 5.0828 15 6 2.8287 -4.4115 5.1629 16 6 2.0258 -3.1180 4.8805 17 6 0.7012 -3.6421 4.2483 18 1 -0.1463 -2.9583 4.2968 19 7 0.5328 -4.9506 4.9754 20 6 0.3742 -4.7338 6.4196 21 6 -0.0341 -6.0256 7.0796 22 8 -0.1792 -7.0281 6.4125 23 7 -0.2390 -6.0666 8.4111 24 6 -0.6110 -7.2416 9.0116 25 1 -0.7393 -8.1345 8.4176 26 6 -0.8228 -7.2839 10.3842 27 7 -1.1788 -8.4103 10.9597 28 14 -0.6000 -5.7397 11.4115 29 1 -1.8882 -5.0046 11.4859 30 1 -0.1642 -6.1146 12.7807 31 1 0.4294 -4.8722 10.7845 32 1 -0.3634 0.0775 1.0248 33 1 -0.3634 0.8486 -0.5796 34 1 -0.3633 -0.9263 -0.4452 35 1 3.1822 1.3087 -0.4452 36 1 1.5809 2.0742 -0.5796 37 1 2.2766 1.7416 1.0248 38 1 3.1715 -0.8755 -1.2680 39 1 1.6111 -1.8587 -1.2681 40 1 2.9079 -3.2185 2.1983 41 1 2.9285 -5.3433 2.7480 42 1 1.4174 -6.3043 2.6609 43 1 3.7616 -4.4148 4.5992 44 1 3.0258 -4.5155 6.2298 45 1 1.8228 -2.5822 5.8078 46 1 2.5621 -2.4789 4.1790 47 1 1.3196 -4.3930 6.8418 48 1 -0.3935 -3.9793 6.5916 49 1 -0.1241 -5.2646 8.9445 50 1 -1.3263 -8.4398 11.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109153801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:53 Heat of formation + Delta-G solvation = -35.208216 kcal Electronic energy + Delta-G solvation = -29669.797719 eV Core-core repulsion = 25697.650337 eV Total energy + Delta-G solvation = -3972.147382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.31089 -40.93419 -39.88086 -38.08408 -36.04211 -35.50433 -33.76634 -32.45188 -31.17888 -30.54281 -29.77522 -28.30722 -28.14582 -25.94352 -24.91806 -23.01078 -21.90415 -21.42313 -20.99631 -20.52189 -20.14354 -19.80736 -18.15007 -17.84350 -17.33317 -16.97126 -16.80608 -16.36256 -16.08798 -15.49559 -15.48543 -15.16522 -15.08835 -14.65022 -14.58149 -14.37109 -14.26667 -13.95446 -13.81292 -13.47270 -13.43466 -13.21361 -13.03617 -12.84290 -12.75957 -12.68030 -12.59216 -12.45002 -12.34104 -12.10185 -11.99557 -11.96723 -11.80880 -11.51253 -11.17696 -11.11781 -10.83608 -10.48362 -10.38824 -10.24909 -9.97852 -9.46778 -8.41918 -6.02479 1.27851 1.34090 1.42439 1.55136 1.95806 2.07131 2.21665 2.66137 2.84831 3.12176 3.18015 3.49951 3.57092 3.69688 3.77608 3.85909 3.90337 4.03697 4.12894 4.18569 4.21792 4.23552 4.29809 4.32277 4.34072 4.40418 4.54319 4.67760 4.71804 4.85039 4.87027 4.88423 4.97816 5.01246 5.02646 5.09611 5.11375 5.13450 5.16087 5.17882 5.23337 5.34816 5.46491 5.52034 5.56875 5.76717 5.86777 5.99419 6.59500 6.62945 6.88103 7.34911 7.39533 7.97476 8.75842 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.511095 B =12152.813649 C =12521.118774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.136 4.136 5 C -0.187 4.187 6 H 0.151 0.849 7 C 0.536 3.464 8 O -0.572 6.572 9 N -0.699 5.699 10 C 0.161 3.839 11 H 0.068 0.932 12 C -0.104 4.104 13 C 0.043 3.957 14 H 0.089 0.911 15 C -0.147 4.147 16 C -0.141 4.141 17 C 0.036 3.964 18 H 0.102 0.898 19 N -0.500 5.500 20 C 0.037 3.963 21 C 0.455 3.545 22 O -0.607 6.607 23 N -0.594 5.594 24 C -0.326 4.326 25 H 0.054 0.946 26 C -0.017 4.017 27 N -0.935 5.935 28 Si 0.965 3.035 29 H -0.259 1.259 30 H -0.273 1.273 31 H -0.232 1.232 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.388 0.612 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.799 23.713 -20.599 35.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.169 4.169 4 C -0.173 4.173 5 C -0.208 4.208 6 H 0.168 0.832 7 C 0.324 3.676 8 O -0.451 6.451 9 N -0.352 5.352 10 C 0.055 3.945 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.066 4.066 14 H 0.107 0.893 15 C -0.186 4.186 16 C -0.180 4.180 17 C -0.073 4.073 18 H 0.120 0.880 19 N -0.223 5.223 20 C -0.095 4.095 21 C 0.242 3.758 22 O -0.491 6.491 23 N -0.236 5.236 24 C -0.455 4.455 25 H 0.072 0.928 26 C -0.215 4.215 27 N -0.575 5.575 28 Si 0.785 3.215 29 H -0.184 1.184 30 H -0.198 1.198 31 H -0.155 1.155 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.223 0.777 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.265 22.601 -21.083 34.041 hybrid contribution 0.330 0.097 1.634 1.670 sum 14.595 22.698 -19.449 33.264 Atomic orbital electron populations 1.21256 0.92549 1.00722 1.01158 1.21662 0.94807 0.91981 1.02196 1.21392 1.00636 0.92373 1.02517 1.23281 1.03457 1.00422 0.90163 1.22433 1.02300 0.99836 0.96235 0.83164 1.20257 0.88025 0.81563 0.77763 1.90731 1.16593 1.75279 1.62538 1.45896 1.10623 1.26789 1.51870 1.21618 0.93771 0.87766 0.91343 0.91339 1.22904 1.01360 0.96158 0.93835 1.24458 0.87565 0.98047 0.96486 0.89300 1.23288 0.99660 0.93767 1.01858 1.23209 0.95584 0.97655 1.01581 1.24767 0.97542 0.90501 0.94488 0.87971 1.67360 1.31363 1.17054 1.06544 1.22004 1.03063 0.94037 0.90365 1.20856 0.81708 0.91395 0.81800 1.90532 1.56051 1.38473 1.63998 1.42042 1.63654 1.10630 1.07320 1.18982 1.45098 0.89143 0.92293 0.92759 1.26109 0.96180 1.01789 0.97414 1.69804 1.47172 1.28430 1.12140 0.85369 0.80239 0.77727 0.78206 1.18370 1.19792 1.15521 0.93606 0.92198 0.93861 0.90506 0.91452 0.91932 0.85148 0.89680 0.74611 0.87244 0.91319 0.87943 0.91904 0.91176 0.88621 0.89224 0.87674 0.77671 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 8.09 71.98 0.58 -1.27 16 2 C -0.11 -1.37 2.70 -52.18 -0.14 -1.51 16 3 C -0.11 -0.91 9.85 71.98 0.71 -0.20 16 4 C -0.14 -1.39 9.53 30.59 0.29 -1.10 16 5 C -0.19 -2.18 5.91 -11.54 -0.07 -2.24 16 6 H 0.15 0.86 8.14 -2.38 -0.02 0.84 16 7 C 0.54 9.97 7.59 87.65 0.67 10.64 16 8 O -0.57 -15.89 12.84 -3.04 -0.04 -15.93 16 9 N -0.70 -10.33 3.64 -433.81 -1.58 -11.91 16 10 C 0.16 3.50 3.08 46.84 0.14 3.65 16 11 H 0.07 1.93 7.71 -2.39 -0.02 1.91 16 12 C -0.10 -2.15 6.23 32.44 0.20 -1.95 16 13 C 0.04 1.15 4.57 46.11 0.21 1.36 16 14 H 0.09 3.00 7.96 -2.39 -0.02 2.98 16 15 C -0.15 -2.73 5.61 32.21 0.18 -2.55 16 16 C -0.14 -2.46 5.52 32.21 0.18 -2.28 16 17 C 0.04 0.88 4.80 46.15 0.22 1.11 16 18 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 19 N -0.50 -15.96 5.09 -808.30 -4.11 -20.07 16 20 C 0.04 1.24 4.82 85.56 0.41 1.65 16 21 C 0.45 21.52 7.71 87.66 0.68 22.19 16 22 O -0.61 -35.00 15.58 -3.07 -0.05 -35.05 16 23 N -0.59 -29.05 5.09 -306.99 -1.56 -30.61 16 24 C -0.33 -19.56 10.16 84.04 0.85 -18.71 16 25 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 26 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 27 N -0.93 -57.26 13.96 21.66 0.30 -56.96 16 28 Si 0.96 39.63 27.74 68.60 1.90 41.53 16 29 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 30 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 31 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 32 H 0.04 1.04 7.26 -2.38 -0.02 1.02 16 33 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 34 H 0.04 0.97 7.01 -2.39 -0.02 0.95 16 35 H 0.08 0.35 7.90 -2.39 -0.02 0.34 16 36 H 0.07 0.53 7.92 -2.38 -0.02 0.51 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.13 0.63 8.05 -2.38 -0.02 0.61 16 39 H 0.08 1.14 8.05 -2.38 -0.02 1.12 16 40 H 0.42 3.28 8.03 -92.71 -0.74 2.53 16 41 H 0.11 1.42 7.35 -2.39 -0.02 1.40 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.26 7.82 -2.39 -0.02 1.25 16 44 H 0.06 1.29 6.96 -2.39 -0.02 1.27 16 45 H 0.07 1.21 7.63 -2.39 -0.02 1.19 16 46 H 0.10 1.23 6.50 -2.39 -0.02 1.21 16 47 H 0.09 2.48 5.10 -2.38 -0.01 2.47 16 48 H 0.11 3.11 8.09 -2.39 -0.02 3.09 16 49 H 0.39 15.79 5.76 -92.71 -0.53 15.26 16 50 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -83.58 387.61 0.08 -83.50 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.37 Total: 37.16 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.59 Total: 8.32 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.95 Total: -119.55 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.09 Total: -50.97 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Total: -83.58 0.08 -83.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109153801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.291 kcal (2) G-P(sol) polarization free energy of solvation -83.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds