Wall clock time and date at job start Tue Mar 31 2020 19:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 115.56117 * 2 1 4 4 C 1.52999 * 117.49948 * 145.69275 * 2 1 3 5 5 C 1.53000 * 60.03353 * 107.49844 * 4 2 1 6 6 H 1.09000 * 117.49619 * 252.47604 * 5 4 2 7 7 C 1.50700 * 117.49778 * 107.47983 * 5 4 2 8 8 O 1.21290 * 119.99605 * 291.39045 * 7 5 4 9 9 N 1.34774 * 119.99958 * 111.39351 * 7 5 4 10 10 C 1.46501 * 119.99639 * 180.02562 * 9 7 5 11 11 H 1.09002 * 110.55192 * 40.65399 * 10 9 7 12 12 C 1.54842 * 110.61148 * 277.61784 * 10 9 7 13 13 C 1.55861 * 103.51093 * 240.39056 * 12 10 9 14 14 H 1.09001 * 115.89349 * 159.82191 * 13 12 10 15 15 C 1.55846 * 105.72440 * 289.26853 * 13 12 10 16 16 C 1.54833 * 103.52083 * 71.48855 * 15 13 12 17 17 C 1.55845 * 110.61126 * 163.52334 * 10 9 7 18 18 H 1.09003 * 115.58415 * 319.61236 * 17 10 9 19 19 N 1.50648 * 101.03028 * 85.51071 * 17 10 9 20 20 C 1.46897 * 111.00251 * 297.65520 * 19 17 10 21 21 C 1.50690 * 109.47341 * 177.06105 * 20 19 17 22 22 O 1.21294 * 120.00445 * 359.97438 * 21 20 19 23 23 N 1.34776 * 120.00147 * 179.97438 * 21 20 19 24 24 C 1.37098 * 120.00374 * 180.02562 * 23 21 20 25 25 H 1.07999 * 119.99786 * 359.97438 * 24 23 21 26 26 C 1.38953 * 120.00413 * 180.02562 * 24 23 21 27 27 N 1.31416 * 119.99691 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00134 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47276 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.46749 * 119.99449 * 28 26 24 31 31 H 1.48493 * 109.47025 * 239.99328 * 28 26 24 32 32 H 1.09005 * 109.46733 * 325.70481 * 1 2 3 33 33 H 1.09001 * 109.47158 * 85.70111 * 1 2 3 34 34 H 1.08994 * 109.47093 * 205.69886 * 1 2 3 35 35 H 1.08998 * 109.46656 * 154.29872 * 3 2 1 36 36 H 1.09002 * 109.46972 * 274.29599 * 3 2 1 37 37 H 1.08996 * 109.47200 * 34.29685 * 3 2 1 38 38 H 1.08999 * 117.49283 * 359.97438 * 4 2 1 39 39 H 1.08997 * 117.49921 * 215.00188 * 4 2 1 40 40 H 0.96998 * 119.99901 * 359.97438 * 9 7 5 41 41 H 1.08999 * 110.60759 * 0.02562 * 12 10 9 42 42 H 1.08995 * 110.61178 * 122.98450 * 12 10 9 43 43 H 1.09001 * 110.61098 * 312.97720 * 15 13 12 44 44 H 1.08999 * 110.74761 * 190.05924 * 15 13 12 45 45 H 1.09004 * 110.60895 * 241.48815 * 16 15 13 46 46 H 1.08994 * 110.61296 * 118.51158 * 16 15 13 47 47 H 1.09007 * 109.46592 * 297.05754 * 20 19 17 48 48 H 1.09002 * 109.47480 * 57.05458 * 20 19 17 49 49 H 0.97007 * 119.99855 * 359.97438 * 23 21 20 50 50 H 0.96999 * 119.99825 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2372 -1.1216 -0.7651 6 1 1.6126 -1.8597 -1.2683 7 6 3.5302 -0.7816 -1.4605 8 8 3.9725 0.3462 -1.4008 9 7 4.1950 -1.7307 -2.1486 10 6 5.4523 -1.4003 -2.8242 11 1 6.0610 -0.7454 -2.2007 12 6 5.1762 -0.7465 -4.2004 13 6 5.8562 -1.7207 -5.2093 14 1 5.5103 -1.6554 -6.2409 15 6 7.3902 -1.5412 -5.0012 16 6 7.6492 -2.2050 -3.6265 17 6 6.2370 -2.6968 -3.1876 18 1 6.2261 -3.4814 -2.4310 19 7 5.6109 -3.0511 -4.5113 20 6 4.1773 -3.3321 -4.3572 21 6 3.5720 -3.6111 -5.7087 22 8 4.2664 -3.5786 -6.7027 23 7 2.2590 -3.8967 -5.8131 24 6 1.7084 -4.1511 -7.0426 25 1 2.3267 -4.1222 -7.9276 26 6 0.3546 -4.4451 -7.1503 27 7 -0.3979 -4.4798 -6.0734 28 14 -0.3957 -4.7910 -8.8256 29 1 0.6557 -4.6897 -9.8694 30 1 -0.9740 -6.1587 -8.8361 31 1 -1.4654 -3.7991 -9.1032 32 1 -0.3633 0.8491 0.5791 33 1 -0.3633 0.0770 -1.0248 34 1 -0.3633 -0.9260 0.4456 35 1 3.1823 1.3084 0.4457 36 1 2.2775 1.7412 -1.0248 37 1 1.5811 2.0744 0.5790 38 1 1.6112 -1.8582 1.2685 39 1 3.1714 -0.8751 1.2685 40 1 3.8414 -2.6327 -2.1960 41 1 4.1039 -0.6680 -4.3796 42 1 5.6490 0.2336 -4.2613 43 1 7.6523 -0.4836 -4.9722 44 1 7.9487 -2.0524 -5.7854 45 1 8.0397 -1.4763 -2.9161 46 1 8.3338 -3.0467 -3.7298 47 1 4.0447 -4.2015 -3.7132 48 1 3.6840 -2.4694 -3.9092 49 1 1.7037 -3.9231 -5.0181 50 1 -1.3430 -4.6847 -6.1486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110448603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:02 Heat of formation + Delta-G solvation = -12.513812 kcal Electronic energy + Delta-G solvation = -30570.769649 eV Core-core repulsion = 26599.606370 eV Total energy + Delta-G solvation = -3971.163279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31555 -39.86868 -37.85980 -37.15547 -34.31174 -33.95089 -31.93432 -31.13578 -29.98124 -29.53587 -28.49390 -27.51851 -26.47519 -24.44147 -24.04959 -21.90477 -20.70306 -20.36534 -19.91768 -19.02626 -18.77575 -17.82205 -17.20514 -16.52120 -16.21918 -15.54719 -15.22063 -14.80816 -14.68353 -14.44572 -14.24587 -13.99682 -13.83490 -13.69648 -13.36719 -13.13223 -12.86192 -12.61800 -12.30320 -12.17197 -12.06525 -11.96365 -11.91606 -11.79654 -11.48840 -11.40669 -11.33028 -11.27946 -11.14162 -10.95896 -10.57794 -10.35714 -10.35100 -10.25942 -10.23577 -9.98929 -9.52311 -9.45036 -9.04292 -8.53092 -8.09054 -7.96855 -6.43476 -3.83837 2.46471 3.04892 3.15100 3.25826 3.32885 3.62204 3.82655 3.91927 4.18510 4.47061 4.51210 4.62184 4.65167 4.68409 4.72830 4.97628 5.00501 5.08246 5.18198 5.20858 5.27768 5.34866 5.39168 5.46018 5.52548 5.54292 5.57459 5.58860 5.71840 5.76239 5.78365 5.82596 5.88217 5.91297 5.93349 5.99257 6.06829 6.10921 6.17217 6.24954 6.26875 6.40805 6.46478 6.54693 6.80656 7.17386 7.44530 7.54011 8.04905 8.21913 8.60055 9.17066 9.52696 10.04626 10.74458 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.004286 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.432452 B = 6530.715517 C = 9287.402824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.192 4.192 6 H 0.125 0.875 7 C 0.544 3.456 8 O -0.535 6.535 9 N -0.722 5.722 10 C 0.115 3.885 11 H 0.092 0.908 12 C -0.161 4.161 13 C 0.059 3.941 14 H 0.127 0.873 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.033 3.967 18 H 0.115 0.885 19 N -0.465 5.465 20 C 0.006 3.994 21 C 0.447 3.553 22 O -0.578 6.578 23 N -0.565 5.565 24 C -0.297 4.297 25 H 0.103 0.897 26 C 0.022 3.978 27 N -0.903 5.903 28 Si 0.928 3.072 29 H -0.268 1.268 30 H -0.281 1.281 31 H -0.282 1.282 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.390 0.610 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 6.837 14.915 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.159 4.159 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.143 0.857 7 C 0.331 3.669 8 O -0.412 6.412 9 N -0.375 5.375 10 C 0.009 3.991 11 H 0.110 0.890 12 C -0.201 4.201 13 C -0.049 4.049 14 H 0.144 0.856 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.076 4.076 18 H 0.133 0.867 19 N -0.187 5.187 20 C -0.126 4.126 21 C 0.232 3.768 22 O -0.461 6.461 23 N -0.202 5.202 24 C -0.427 4.427 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.544 5.544 28 Si 0.755 3.245 29 H -0.192 1.192 30 H -0.207 1.207 31 H -0.208 1.208 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.240 0.760 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.223 0.777 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.005 7.079 13.983 17.599 hybrid contribution -1.582 -0.187 0.039 1.594 sum 6.423 6.893 14.022 16.893 Atomic orbital electron populations 1.21416 0.91424 1.02152 1.02554 1.21577 0.94779 0.91712 1.01164 1.21343 0.99392 0.92521 1.02621 1.23200 1.02869 1.01582 0.90808 1.22432 0.97824 1.05360 0.95690 0.85659 1.19727 0.84576 0.84798 0.77807 1.90682 1.68475 1.20612 1.61453 1.46480 1.24558 1.13714 1.52776 1.22852 0.84816 0.97896 0.93502 0.89015 1.23722 1.02089 0.99947 0.94377 1.24776 0.94655 0.86367 0.99054 0.85554 1.22593 0.95579 0.99973 0.97239 1.22490 0.95001 1.00199 0.96924 1.24786 0.95428 0.94233 0.93189 0.86743 1.67809 1.11371 1.29971 1.09591 1.22494 0.90198 1.01574 0.98347 1.19657 0.82999 0.84362 0.89752 1.90509 1.60743 1.56647 1.38246 1.41847 1.06984 1.61500 1.09856 1.19736 0.92542 1.43968 0.86412 0.87919 1.25236 0.96189 0.97472 0.98994 1.69613 1.07054 1.49472 1.28275 0.85821 0.78965 0.77875 0.81832 1.19231 1.20745 1.20792 0.91745 0.91671 0.92179 0.91854 0.91385 0.93389 0.87841 0.88463 0.75992 0.90780 0.90706 0.91461 0.90799 0.91339 0.90628 0.89686 0.91080 0.77685 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.85 37.16 0.37 -0.73 16 2 C -0.09 -0.98 2.70 -154.46 -0.42 -1.40 16 3 C -0.10 -1.18 8.09 37.16 0.30 -0.88 16 4 C -0.15 -1.38 9.52 -26.73 -0.25 -1.63 16 5 C -0.19 -2.16 5.91 -91.73 -0.54 -2.70 16 6 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 7 C 0.54 7.25 7.56 -10.99 -0.08 7.16 16 8 O -0.54 -8.47 12.90 5.55 0.07 -8.40 16 9 N -0.72 -8.80 3.75 -51.40 -0.19 -9.00 16 10 C 0.12 1.45 2.47 -65.44 -0.16 1.29 16 11 H 0.09 1.17 7.47 -51.93 -0.39 0.78 16 12 C -0.16 -2.33 5.46 -24.23 -0.13 -2.47 16 13 C 0.06 0.93 4.33 -61.63 -0.27 0.66 16 14 H 0.13 2.38 6.98 -51.93 -0.36 2.02 16 15 C -0.12 -1.43 6.46 -24.25 -0.16 -1.58 16 16 C -0.11 -1.16 6.44 -24.24 -0.16 -1.32 16 17 C 0.03 0.40 4.58 -62.56 -0.29 0.12 16 18 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 19 N -0.46 -7.45 5.35 -205.68 -1.10 -8.55 16 20 C 0.01 0.10 4.06 -4.98 -0.02 0.08 16 21 C 0.45 10.36 7.60 -10.99 -0.08 10.28 16 22 O -0.58 -15.40 14.45 5.55 0.08 -15.32 16 23 N -0.57 -14.04 5.29 -10.97 -0.06 -14.10 16 24 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 25 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 26 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 27 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 28 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 32 H 0.06 0.53 7.92 -51.93 -0.41 0.11 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 35 H 0.06 0.78 7.01 -51.93 -0.36 0.42 16 36 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 37 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 38 H 0.10 0.79 8.05 -51.93 -0.42 0.38 16 39 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 40 H 0.40 4.48 6.48 -40.82 -0.26 4.21 16 41 H 0.07 1.24 7.07 -51.93 -0.37 0.88 16 42 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 43 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.63 7.81 -51.93 -0.41 0.22 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 1.30 8.03 -51.92 -0.42 0.88 16 48 H 0.07 1.14 3.54 -51.93 -0.18 0.96 16 49 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 50 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -31.84 387.14 -9.76 -41.60 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -7.96 Total: 16.42 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.13 Total: -0.96 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.63 Total: -55.11 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.15 Total: -23.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.84 -9.76 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110448603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds