Wall clock time and date at job start Tue Mar 31 2020 19:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 115.56117 * 2 1 4 4 C 1.52999 * 117.49948 * 145.69275 * 2 1 3 5 5 C 1.53000 * 60.03353 * 107.49844 * 4 2 1 6 6 H 1.09000 * 117.49619 * 252.47604 * 5 4 2 7 7 C 1.50700 * 117.49778 * 107.47983 * 5 4 2 8 8 O 1.21290 * 119.99605 * 291.39045 * 7 5 4 9 9 N 1.34774 * 119.99958 * 111.39351 * 7 5 4 10 10 C 1.46501 * 119.99639 * 180.02562 * 9 7 5 11 11 H 1.09002 * 110.55192 * 40.65399 * 10 9 7 12 12 C 1.54842 * 110.61148 * 277.61784 * 10 9 7 13 13 C 1.55861 * 103.51093 * 240.39056 * 12 10 9 14 14 H 1.09001 * 115.89349 * 159.82191 * 13 12 10 15 15 C 1.55846 * 105.72440 * 289.26853 * 13 12 10 16 16 C 1.54833 * 103.52083 * 71.48855 * 15 13 12 17 17 C 1.55845 * 110.61126 * 163.52334 * 10 9 7 18 18 H 1.09003 * 115.58415 * 319.61236 * 17 10 9 19 19 N 1.50648 * 101.03028 * 85.51071 * 17 10 9 20 20 C 1.46897 * 111.00251 * 297.65520 * 19 17 10 21 21 C 1.50690 * 109.47341 * 177.06105 * 20 19 17 22 22 O 1.21294 * 120.00445 * 359.97438 * 21 20 19 23 23 N 1.34776 * 120.00147 * 179.97438 * 21 20 19 24 24 C 1.37098 * 120.00374 * 180.02562 * 23 21 20 25 25 H 1.07999 * 119.99786 * 359.97438 * 24 23 21 26 26 C 1.38953 * 120.00413 * 180.02562 * 24 23 21 27 27 N 1.31416 * 119.99691 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00134 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47276 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.46749 * 119.99449 * 28 26 24 31 31 H 1.48493 * 109.47025 * 239.99328 * 28 26 24 32 32 H 1.09005 * 109.46733 * 325.70481 * 1 2 3 33 33 H 1.09001 * 109.47158 * 85.70111 * 1 2 3 34 34 H 1.08994 * 109.47093 * 205.69886 * 1 2 3 35 35 H 1.08998 * 109.46656 * 154.29872 * 3 2 1 36 36 H 1.09002 * 109.46972 * 274.29599 * 3 2 1 37 37 H 1.08996 * 109.47200 * 34.29685 * 3 2 1 38 38 H 1.08999 * 117.49283 * 359.97438 * 4 2 1 39 39 H 1.08997 * 117.49921 * 215.00188 * 4 2 1 40 40 H 0.96998 * 119.99901 * 359.97438 * 9 7 5 41 41 H 1.08999 * 110.60759 * 0.02562 * 12 10 9 42 42 H 1.08995 * 110.61178 * 122.98450 * 12 10 9 43 43 H 1.09001 * 110.61098 * 312.97720 * 15 13 12 44 44 H 1.08999 * 110.74761 * 190.05924 * 15 13 12 45 45 H 1.09004 * 110.60895 * 241.48815 * 16 15 13 46 46 H 1.08994 * 110.61296 * 118.51158 * 16 15 13 47 47 H 1.09007 * 109.46592 * 297.05754 * 20 19 17 48 48 H 1.09002 * 109.47480 * 57.05458 * 20 19 17 49 49 H 0.97007 * 119.99855 * 359.97438 * 23 21 20 50 50 H 0.96999 * 119.99825 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2372 -1.1216 -0.7651 6 1 1.6126 -1.8597 -1.2683 7 6 3.5302 -0.7816 -1.4605 8 8 3.9725 0.3462 -1.4008 9 7 4.1950 -1.7307 -2.1486 10 6 5.4523 -1.4003 -2.8242 11 1 6.0610 -0.7454 -2.2007 12 6 5.1762 -0.7465 -4.2004 13 6 5.8562 -1.7207 -5.2093 14 1 5.5103 -1.6554 -6.2409 15 6 7.3902 -1.5412 -5.0012 16 6 7.6492 -2.2050 -3.6265 17 6 6.2370 -2.6968 -3.1876 18 1 6.2261 -3.4814 -2.4310 19 7 5.6109 -3.0511 -4.5113 20 6 4.1773 -3.3321 -4.3572 21 6 3.5720 -3.6111 -5.7087 22 8 4.2664 -3.5786 -6.7027 23 7 2.2590 -3.8967 -5.8131 24 6 1.7084 -4.1511 -7.0426 25 1 2.3267 -4.1222 -7.9276 26 6 0.3546 -4.4451 -7.1503 27 7 -0.3979 -4.4798 -6.0734 28 14 -0.3957 -4.7910 -8.8256 29 1 0.6557 -4.6897 -9.8694 30 1 -0.9740 -6.1587 -8.8361 31 1 -1.4654 -3.7991 -9.1032 32 1 -0.3633 0.8491 0.5791 33 1 -0.3633 0.0770 -1.0248 34 1 -0.3633 -0.9260 0.4456 35 1 3.1823 1.3084 0.4457 36 1 2.2775 1.7412 -1.0248 37 1 1.5811 2.0744 0.5790 38 1 1.6112 -1.8582 1.2685 39 1 3.1714 -0.8751 1.2685 40 1 3.8414 -2.6327 -2.1960 41 1 4.1039 -0.6680 -4.3796 42 1 5.6490 0.2336 -4.2613 43 1 7.6523 -0.4836 -4.9722 44 1 7.9487 -2.0524 -5.7854 45 1 8.0397 -1.4763 -2.9161 46 1 8.3338 -3.0467 -3.7298 47 1 4.0447 -4.2015 -3.7132 48 1 3.6840 -2.4694 -3.9092 49 1 1.7037 -3.9231 -5.0181 50 1 -1.3430 -4.6847 -6.1486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110448603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:01 Heat of formation + Delta-G solvation = -34.494462 kcal Electronic energy + Delta-G solvation = -30571.722802 eV Core-core repulsion = 26599.606370 eV Total energy + Delta-G solvation = -3972.116432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.44866 -40.88176 -39.70331 -38.09380 -35.97721 -35.35704 -33.45547 -32.94277 -30.95318 -30.56533 -29.49128 -28.34700 -28.08249 -26.00237 -25.19237 -22.85574 -21.80433 -21.76709 -20.93612 -20.45048 -19.93371 -19.70818 -18.25445 -17.61501 -17.54985 -17.10361 -16.55377 -16.30080 -15.90097 -15.76889 -15.60796 -15.24083 -15.06810 -14.77664 -14.49852 -14.34139 -14.11070 -13.71345 -13.57092 -13.47454 -13.28014 -13.14504 -13.01879 -12.89433 -12.88254 -12.68354 -12.56795 -12.41350 -12.32056 -12.14600 -12.13308 -12.06590 -11.71957 -11.49390 -11.29089 -11.16488 -10.88282 -10.42270 -10.32198 -10.11342 -10.00774 -9.46064 -8.47753 -5.95643 1.34545 1.40055 1.47130 1.53640 2.04648 2.08430 2.26980 2.68375 2.77566 3.18234 3.23416 3.54427 3.62313 3.66252 3.72173 3.76983 3.86201 4.07456 4.11948 4.18292 4.19776 4.21160 4.28904 4.40146 4.46503 4.50102 4.52278 4.66126 4.70854 4.73970 4.80268 4.83845 4.91401 4.98538 5.04623 5.06742 5.08988 5.10466 5.18584 5.24595 5.29914 5.30307 5.40180 5.45646 5.53950 5.66912 5.84396 6.06524 6.45365 6.59888 7.12698 7.20704 7.55499 8.11960 8.69858 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.004286 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.432452 B = 6530.715517 C = 9287.402824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.124 4.124 5 C -0.206 4.206 6 H 0.131 0.869 7 C 0.539 3.461 8 O -0.564 6.564 9 N -0.717 5.717 10 C 0.123 3.877 11 H 0.099 0.901 12 C -0.155 4.155 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.110 4.110 16 C -0.100 4.100 17 C 0.044 3.956 18 H 0.141 0.859 19 N -0.486 5.486 20 C 0.022 3.978 21 C 0.442 3.558 22 O -0.617 6.617 23 N -0.573 5.573 24 C -0.331 4.331 25 H 0.075 0.925 26 C -0.010 4.010 27 N -0.918 5.918 28 Si 0.989 3.011 29 H -0.276 1.276 30 H -0.269 1.269 31 H -0.272 1.272 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.409 0.591 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 6.253 17.235 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.104 4.104 3 C -0.153 4.153 4 C -0.161 4.161 5 C -0.227 4.227 6 H 0.149 0.851 7 C 0.328 3.672 8 O -0.444 6.444 9 N -0.370 5.370 10 C 0.017 3.983 11 H 0.117 0.883 12 C -0.195 4.195 13 C -0.060 4.060 14 H 0.100 0.900 15 C -0.148 4.148 16 C -0.138 4.138 17 C -0.065 4.065 18 H 0.158 0.842 19 N -0.209 5.209 20 C -0.110 4.110 21 C 0.229 3.771 22 O -0.503 6.503 23 N -0.211 5.211 24 C -0.461 4.461 25 H 0.093 0.907 26 C -0.210 4.210 27 N -0.559 5.559 28 Si 0.813 3.187 29 H -0.200 1.200 30 H -0.194 1.194 31 H -0.197 1.197 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.129 0.871 48 H 0.101 0.899 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.149 6.479 16.332 19.368 hybrid contribution -1.600 0.045 -0.713 1.752 sum 6.550 6.524 15.619 18.149 Atomic orbital electron populations 1.21416 0.90345 1.03433 1.02095 1.21686 0.95609 0.91259 1.01814 1.21246 0.99331 0.93723 1.01036 1.23283 1.02819 1.00758 0.89220 1.22470 0.97020 1.06170 0.97082 0.85110 1.20126 0.85092 0.84415 0.77584 1.90673 1.69361 1.21737 1.62587 1.46438 1.24413 1.13910 1.52243 1.22776 0.85126 0.98200 0.92160 0.88268 1.23626 0.99958 1.00327 0.95568 1.24639 0.97344 0.86908 0.97123 0.89975 1.22571 0.92536 1.01323 0.98361 1.22533 0.94255 1.01037 0.96024 1.24960 0.95547 0.94413 0.91599 0.84169 1.67802 1.10335 1.30494 1.12303 1.22362 0.91079 1.03058 0.94528 1.20747 0.82269 0.82296 0.91755 1.90481 1.61555 1.57803 1.40500 1.41893 1.07786 1.62157 1.09233 1.19646 0.93240 1.46394 0.86830 0.90652 1.25960 0.95944 0.96605 1.02480 1.69662 1.07504 1.49110 1.29645 0.84930 0.77926 0.78355 0.77503 1.20029 1.19420 1.19705 0.90635 0.92980 0.90782 0.92916 0.94057 0.91751 0.85460 0.88427 0.75237 0.93879 0.90063 0.89729 0.91521 0.88709 0.89598 0.87061 0.89939 0.77122 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.85 71.98 0.71 -1.24 16 2 C -0.10 -2.05 2.70 -52.15 -0.14 -2.20 16 3 C -0.10 -2.19 8.09 71.98 0.58 -1.61 16 4 C -0.12 -2.00 9.52 30.59 0.29 -1.71 16 5 C -0.21 -4.36 5.91 -11.51 -0.07 -4.43 16 6 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 7 C 0.54 13.91 7.56 87.66 0.66 14.57 16 8 O -0.56 -17.73 12.90 -3.06 -0.04 -17.77 16 9 N -0.72 -16.43 3.75 -434.92 -1.63 -18.07 16 10 C 0.12 2.89 2.47 46.60 0.12 3.00 16 11 H 0.10 2.27 7.47 -2.39 -0.02 2.25 16 12 C -0.15 -4.51 5.46 32.21 0.18 -4.33 16 13 C 0.05 1.54 4.33 45.83 0.20 1.73 16 14 H 0.08 3.35 6.98 -2.39 -0.02 3.33 16 15 C -0.11 -2.59 6.46 32.20 0.21 -2.38 16 16 C -0.10 -1.85 6.44 32.21 0.21 -1.64 16 17 C 0.04 0.93 4.58 46.15 0.21 1.15 16 18 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 19 N -0.49 -15.28 5.35 -804.64 -4.30 -19.58 16 20 C 0.02 0.74 4.06 85.55 0.35 1.08 16 21 C 0.44 21.18 7.60 87.65 0.67 21.84 16 22 O -0.62 -34.56 14.45 -3.07 -0.04 -34.60 16 23 N -0.57 -29.37 5.29 -306.99 -1.62 -30.99 16 24 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 25 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 26 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 27 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 28 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 30 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 31 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 32 H 0.07 1.09 7.92 -2.38 -0.02 1.07 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.03 7.90 -2.39 -0.02 1.01 16 35 H 0.05 1.29 7.01 -2.39 -0.02 1.27 16 36 H 0.04 1.14 7.26 -2.39 -0.02 1.12 16 37 H 0.06 1.20 7.92 -2.39 -0.02 1.18 16 38 H 0.13 1.48 8.05 -2.39 -0.02 1.46 16 39 H 0.10 1.60 8.05 -2.39 -0.02 1.58 16 40 H 0.41 8.29 6.48 -92.71 -0.60 7.69 16 41 H 0.04 1.50 7.07 -2.39 -0.02 1.49 16 42 H 0.08 2.21 7.83 -2.39 -0.02 2.20 16 43 H 0.08 1.68 7.85 -2.39 -0.02 1.66 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 1.32 7.81 -2.38 -0.02 1.31 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.11 3.20 8.03 -2.38 -0.02 3.18 16 48 H 0.08 2.63 3.54 -2.39 -0.01 2.63 16 49 H 0.40 19.05 7.90 -92.70 -0.73 18.32 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -71.93 387.14 -0.25 -72.18 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -0.36 Total: 46.72 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.45 Total: 5.67 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.27 Total: -117.37 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.08 Total: -52.38 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.93 -0.25 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110448603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.682 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds