Wall clock time and date at job start Tue Mar 31 2020 19:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 110.21072 * 2 1 4 4 C 1.52999 * 109.47100 * 65.47973 * 3 2 1 5 5 C 1.50695 * 109.47159 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00290 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99749 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99372 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.68875 * 32.01591 * 8 7 5 10 10 C 1.55483 * 110.75622 * 268.95664 * 8 7 5 11 11 C 1.55851 * 103.32581 * 241.51827 * 10 8 7 12 12 H 1.09001 * 116.12490 * 159.23728 * 11 10 8 13 13 C 1.55390 * 105.04527 * 288.04282 * 11 10 8 14 14 C 1.54850 * 103.48466 * 72.07503 * 13 11 10 15 15 C 1.55844 * 103.44734 * 359.87577 * 14 13 11 16 16 H 1.09000 * 115.56226 * 158.81030 * 15 14 13 17 17 N 1.50235 * 101.05319 * 32.93441 * 15 14 13 18 18 C 1.36934 * 130.84244 * 125.99522 * 17 15 14 19 19 H 1.08009 * 119.99593 * 350.17030 * 18 17 15 20 20 C 1.38810 * 120.00382 * 169.88991 * 18 17 15 21 21 N 1.31613 * 119.99698 * 350.76971 * 20 18 17 22 22 Si 1.86800 * 119.99875 * 170.76567 * 20 18 17 23 23 H 1.48504 * 109.47087 * 91.72521 * 22 20 18 24 24 H 1.48499 * 109.46901 * 211.72439 * 22 20 18 25 25 H 1.48499 * 109.47388 * 331.72238 * 22 20 18 26 26 C 1.54482 * 110.32390 * 238.02586 * 2 1 3 27 27 C 1.54626 * 101.76389 * 266.37461 * 26 2 1 28 28 C 1.51284 * 104.19436 * 335.20043 * 27 26 2 29 29 O 1.21282 * 124.93767 * 196.22936 * 28 27 26 30 30 N 1.34416 * 110.11522 * 16.25218 * 28 27 26 31 31 H 1.09000 * 109.47182 * 60.70219 * 1 2 3 32 32 H 1.09006 * 109.46605 * 180.69760 * 1 2 3 33 33 H 1.08993 * 109.47359 * 300.69625 * 1 2 3 34 34 H 1.08996 * 109.47390 * 305.47125 * 3 2 1 35 35 H 1.09002 * 109.46679 * 185.47246 * 3 2 1 36 36 H 1.09000 * 109.47030 * 59.99591 * 4 3 2 37 37 H 1.08998 * 109.46802 * 299.99989 * 4 3 2 38 38 H 0.97001 * 120.00143 * 0.02562 * 7 5 4 39 39 H 1.09000 * 110.60731 * 123.10443 * 10 8 7 40 40 H 1.09001 * 110.89258 * 0.06670 * 10 8 7 41 41 H 1.08998 * 110.71351 * 313.51896 * 13 11 10 42 42 H 1.08999 * 110.49472 * 190.53026 * 13 11 10 43 43 H 1.08998 * 110.62687 * 241.37880 * 14 13 11 44 44 H 1.09002 * 110.62297 * 118.36428 * 14 13 11 45 45 H 0.97005 * 120.00078 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.96686 * 24.49250 * 26 2 1 47 47 H 1.08995 * 110.96953 * 148.25209 * 26 2 1 48 48 H 1.09003 * 110.48614 * 216.51989 * 27 26 2 49 49 H 1.09001 * 110.59776 * 93.93173 * 27 26 2 50 50 H 0.97003 * 124.34420 * 180.42531 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4359 0.0000 4 6 1.6730 2.1213 1.3124 5 6 2.1941 3.5353 1.3127 6 8 2.8134 3.9535 0.3575 7 7 1.9719 4.3351 2.3745 8 6 2.4781 5.7099 2.3744 9 1 2.4867 6.1170 1.3634 10 6 3.8991 5.7739 3.0023 11 6 3.7040 6.7021 4.2389 12 1 4.4564 6.6210 5.0234 13 6 3.5079 8.1257 3.6478 14 6 2.0921 8.0657 3.0235 15 6 1.6264 6.6085 3.3210 16 1 0.5490 6.4449 3.2971 17 7 2.2985 6.3550 4.6405 18 6 1.7867 5.9411 5.8413 19 1 0.7173 5.8946 5.9853 20 6 2.6422 5.5756 6.8715 21 7 3.9324 5.4514 6.6427 22 14 1.9624 5.2602 8.5826 23 1 1.6339 3.8191 8.7268 24 1 2.9785 5.6402 9.5967 25 1 0.7345 6.0705 8.7845 26 6 2.0665 -0.7671 -1.2289 27 6 2.2658 -2.1876 -0.6514 28 6 2.4527 -1.9619 0.8327 29 8 2.9098 -2.7759 1.6069 30 7 2.0379 -0.7282 1.1685 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3633 -1.0277 0.0125 33 1 -0.3634 0.5246 0.8836 34 1 1.6245 1.9829 -0.8369 35 1 3.1441 1.4233 -0.0980 36 1 2.1071 1.5742 2.1492 37 1 0.5875 2.1337 1.4105 38 1 1.4769 4.0005 3.1386 39 1 4.6090 6.2126 2.3011 40 1 4.2313 4.7837 3.3141 41 1 4.2565 8.3320 2.8828 42 1 3.5479 8.8758 4.4377 43 1 2.1384 8.2422 1.9489 44 1 1.4299 8.7860 3.5038 45 1 4.5302 5.1957 7.3625 46 1 1.3334 -0.7732 -2.0355 47 1 3.0136 -0.3473 -1.5677 48 1 3.1527 -2.6532 -1.0812 49 1 1.3855 -2.8034 -0.8358 50 1 2.0704 -0.3658 2.0677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111525200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:40 Heat of formation + Delta-G solvation = -41.561757 kcal Electronic energy + Delta-G solvation = -29857.552006 eV Core-core repulsion = 25885.129114 eV Total energy + Delta-G solvation = -3972.422893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.93702 -39.76712 -38.49975 -37.33324 -33.76003 -33.18211 -32.55836 -31.63038 -29.82404 -29.15783 -28.77039 -27.80132 -26.08147 -24.26487 -23.59903 -21.42653 -21.06345 -20.31023 -19.86012 -19.55184 -18.66878 -17.39179 -17.02261 -16.47311 -16.36004 -15.81997 -15.52108 -15.00256 -14.85351 -14.40540 -14.14258 -13.98929 -13.88596 -13.62881 -13.46519 -13.13940 -12.88219 -12.74492 -12.56956 -12.47163 -12.06396 -11.87823 -11.81869 -11.34283 -11.23887 -11.19227 -11.12740 -10.96218 -10.90074 -10.88031 -10.56590 -10.40890 -10.12712 -10.04199 -10.00501 -9.69123 -9.36765 -9.35305 -9.17261 -8.92972 -8.41621 -6.96988 -5.83171 -3.18818 2.42917 2.94901 3.13958 3.32408 3.39221 3.40785 3.56991 3.99394 4.14870 4.36956 4.39524 4.65077 4.66709 4.92005 4.98600 5.08643 5.08732 5.20861 5.24541 5.30610 5.36422 5.46857 5.50945 5.57006 5.60659 5.62154 5.66926 5.78088 5.81955 5.90993 5.99977 6.06135 6.09327 6.10642 6.27691 6.38516 6.45846 6.57110 6.63229 6.68227 6.79091 6.85500 6.91976 7.09395 7.30047 7.44285 7.71896 7.99910 8.06942 8.07820 8.62314 8.99399 9.64577 10.48134 11.28770 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.002974 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.628247 B = 9411.370098 C =10838.974947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 C -0.102 4.102 4 C -0.145 4.145 5 C 0.509 3.491 6 O -0.556 6.556 7 N -0.704 5.704 8 C 0.128 3.872 9 H 0.078 0.922 10 C -0.136 4.136 11 C 0.160 3.840 12 H 0.138 0.862 13 C -0.142 4.142 14 C -0.127 4.127 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.589 5.589 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C -0.123 4.123 27 C -0.156 4.156 28 C 0.518 3.482 29 O -0.539 6.539 30 N -0.721 5.721 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 -7.500 -15.989 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.140 4.140 4 C -0.186 4.186 5 C 0.295 3.705 6 O -0.435 6.435 7 N -0.353 5.353 8 C 0.022 3.978 9 H 0.096 0.904 10 C -0.176 4.176 11 C 0.053 3.947 12 H 0.155 0.845 13 C -0.181 4.181 14 C -0.167 4.167 15 C 0.015 3.985 16 H 0.105 0.895 17 N -0.310 5.310 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.559 5.559 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.161 4.161 27 C -0.197 4.197 28 C 0.305 3.695 29 O -0.416 6.416 30 N -0.377 5.377 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.238 0.762 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.039 -7.780 -16.033 18.816 hybrid contribution -0.570 -0.092 1.768 1.860 sum -6.609 -7.872 -14.265 17.582 Atomic orbital electron populations 1.22241 0.93685 1.02606 1.03223 1.21128 0.94237 0.92443 0.85464 1.21651 1.02584 0.92212 0.97584 1.21722 1.02795 0.94053 0.99986 1.20475 0.79941 0.87360 0.82749 1.90656 1.41703 1.76000 1.35128 1.46021 1.56296 1.13792 1.19182 1.22699 0.95533 0.80936 0.98678 0.90370 1.23470 0.94533 1.01499 0.98146 1.23269 0.89596 0.88464 0.93351 0.84506 1.23017 0.95466 1.00817 0.98846 1.22889 0.97717 0.97619 0.98480 1.23187 0.95319 0.92903 0.87055 0.89470 1.46492 1.03421 1.76438 1.04640 1.18940 0.91467 1.37099 0.87302 0.90623 1.24746 0.95662 1.01377 0.98495 1.69698 1.02220 1.52685 1.31317 0.86148 0.77769 0.77818 0.84189 1.21668 1.21634 1.20738 1.22711 1.02998 0.93694 0.96683 1.22356 1.05010 0.98768 0.93519 1.20887 0.76105 0.81547 0.90994 1.90768 1.45480 1.47764 1.57556 1.46503 1.63982 1.15727 1.11507 0.90865 0.92116 0.91553 0.89498 0.90289 0.89373 0.88799 0.76218 0.93108 0.91962 0.93114 0.92768 0.92928 0.92438 0.93576 0.88967 0.89479 0.88106 0.87931 0.75012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.57 37.16 0.32 -0.65 16 2 C 0.15 1.14 0.87 -130.90 -0.11 1.03 16 3 C -0.10 -0.94 3.72 -26.73 -0.10 -1.04 16 4 C -0.15 -1.53 5.25 -27.89 -0.15 -1.67 16 5 C 0.51 7.74 7.83 -10.99 -0.09 7.65 16 6 O -0.56 -10.19 15.63 5.56 0.09 -10.10 16 7 N -0.70 -11.51 5.10 -51.07 -0.26 -11.77 16 8 C 0.13 2.32 2.82 -65.09 -0.18 2.14 16 9 H 0.08 1.43 7.23 -51.93 -0.38 1.05 16 10 C -0.14 -2.76 6.25 -23.89 -0.15 -2.91 16 11 C 0.16 3.55 4.60 -63.05 -0.29 3.26 16 12 H 0.14 3.51 5.93 -51.93 -0.31 3.20 16 13 C -0.14 -2.69 6.42 -24.49 -0.16 -2.85 16 14 C -0.13 -2.21 6.44 -24.24 -0.16 -2.36 16 15 C 0.12 2.32 5.06 -62.80 -0.32 2.00 16 16 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 17 N -0.59 -13.50 2.98 -146.08 -0.43 -13.94 16 18 C -0.22 -5.61 10.55 -15.06 -0.16 -5.77 16 19 H 0.08 1.87 7.85 -52.48 -0.41 1.46 16 20 C -0.01 -0.16 5.46 -17.43 -0.10 -0.25 16 21 N -0.91 -25.19 10.77 55.49 0.60 -24.60 16 22 Si 0.91 21.05 29.56 -169.99 -5.03 16.02 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.12 -0.74 6.21 -25.10 -0.16 -0.89 16 27 C -0.16 -1.13 6.86 -26.74 -0.18 -1.31 16 28 C 0.52 5.92 8.43 -10.86 -0.09 5.82 16 29 O -0.54 -8.68 18.03 5.56 0.10 -8.58 16 30 N -0.72 -6.87 5.34 -46.61 -0.25 -7.12 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 6.62 -51.93 -0.34 0.08 16 34 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.08 0.87 7.99 -51.93 -0.42 0.46 16 36 H 0.09 0.90 6.66 -51.93 -0.35 0.56 16 37 H 0.09 0.79 6.63 -51.93 -0.34 0.45 16 38 H 0.40 6.46 8.66 -40.82 -0.35 6.11 16 39 H 0.05 0.97 7.80 -51.93 -0.41 0.56 16 40 H 0.06 1.40 8.00 -51.93 -0.42 0.99 16 41 H 0.05 0.86 7.80 -51.93 -0.41 0.46 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.09 0.37 7.90 -51.93 -0.41 -0.04 16 47 H 0.09 0.53 7.84 -51.93 -0.41 0.13 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.41 3.97 7.40 -40.82 -0.30 3.67 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -32.20 389.60 -9.54 -41.74 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.16 Total: 10.27 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.07 Total: 2.19 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.35 Total: -57.42 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.19 Total: -18.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.20 -9.54 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111525200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.181 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds