Wall clock time and date at job start Tue Mar 31 2020 19:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 110.43657 * 2 1 4 4 O 1.21278 * 120.00562 * 242.05206 * 3 2 1 5 5 N 1.34781 * 119.99836 * 62.04971 * 3 2 1 6 6 C 1.48127 * 127.84074 * 355.02052 * 5 3 2 7 7 C 1.54325 * 104.69084 * 140.21831 * 6 5 3 8 8 H 1.08992 * 112.59785 * 262.03511 * 7 6 5 9 9 C 1.54164 * 108.85737 * 137.44728 * 7 6 5 10 10 C 1.54838 * 104.32727 * 271.23923 * 9 7 6 11 11 C 1.55772 * 102.31557 * 321.12912 * 10 9 7 12 12 C 1.54164 * 103.87959 * 39.35061 * 11 10 9 13 13 C 1.53008 * 111.81796 * 212.53856 * 12 11 10 14 14 N 1.46498 * 109.47006 * 299.25570 * 13 12 11 15 15 C 1.36940 * 119.99786 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99983 * 359.72206 * 15 14 13 17 17 C 1.38806 * 119.99969 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00019 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00034 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47016 * 90.00301 * 19 17 15 21 21 H 1.48497 * 109.47210 * 210.00065 * 19 17 15 22 22 H 1.48498 * 109.46837 * 330.00091 * 19 17 15 23 23 C 1.48113 * 127.84598 * 174.97662 * 5 3 2 24 24 C 1.54623 * 110.48844 * 122.54069 * 2 1 3 25 25 C 1.54482 * 101.76515 * 143.60917 * 24 2 1 26 26 N 1.46766 * 105.47415 * 334.58474 * 25 24 2 27 27 C 1.34424 * 111.30051 * 17.01919 * 26 25 24 28 28 O 1.21273 * 124.94465 * 179.62869 * 27 26 25 29 29 H 1.08999 * 109.46948 * 54.07282 * 1 2 3 30 30 H 1.08994 * 109.47354 * 174.07367 * 1 2 3 31 31 H 1.09002 * 109.46909 * 294.07699 * 1 2 3 32 32 H 1.09000 * 110.39108 * 21.41817 * 6 5 3 33 33 H 1.08994 * 110.39178 * 259.02182 * 6 5 3 34 34 H 1.08999 * 110.46448 * 29.95452 * 9 7 6 35 35 H 1.09007 * 110.45734 * 152.40195 * 9 7 6 36 36 H 1.09005 * 110.75964 * 80.12507 * 10 9 7 37 37 H 1.09005 * 110.75980 * 203.31398 * 10 9 7 38 38 H 1.09000 * 111.74889 * 280.25096 * 11 10 9 39 39 H 1.09005 * 109.59924 * 157.39389 * 11 10 9 40 40 H 1.09003 * 109.46803 * 179.25604 * 13 12 11 41 41 H 1.08999 * 109.47252 * 59.25752 * 13 12 11 42 42 H 0.96996 * 120.00293 * 359.97438 * 14 13 12 43 43 H 0.97000 * 119.99907 * 180.02562 * 18 17 15 44 44 H 1.09002 * 110.39243 * 100.97841 * 23 5 3 45 45 H 1.09002 * 110.39233 * 338.59055 * 23 5 3 46 46 H 1.08999 * 110.97645 * 261.72751 * 24 2 1 47 47 H 1.08999 * 110.96882 * 25.49777 * 24 2 1 48 48 H 1.09002 * 110.24864 * 93.58835 * 25 24 2 49 49 H 1.09004 * 110.24824 * 215.58916 * 25 24 2 50 50 H 0.96997 * 124.35227 * 197.00911 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7292 1.8086 -0.9278 5 7 1.7788 2.2347 1.0311 6 6 0.8994 1.9701 2.1934 7 6 1.6416 2.5919 3.3952 8 1 2.2088 1.8551 3.9639 9 6 0.6219 3.3371 4.2792 10 6 0.5751 4.7673 3.6878 11 6 2.0689 5.0287 3.3319 12 6 2.5589 3.6765 2.7768 13 6 4.0338 3.4297 3.1007 14 7 4.8503 4.4829 2.4922 15 6 6.2108 4.4704 2.6478 16 1 6.6814 3.6867 3.2229 17 6 6.9845 5.4680 2.0708 18 7 6.4104 6.4262 1.3746 19 14 8.8403 5.4515 2.2837 20 1 9.4584 4.6769 1.1778 21 1 9.3537 6.8446 2.2595 22 1 9.1838 4.8198 3.5830 23 6 2.2847 3.6078 1.2597 24 6 2.0712 -0.7791 1.2210 25 6 3.3218 -1.4650 0.6279 26 7 3.0601 -1.5792 -0.8117 27 6 2.0622 -0.7632 -1.1929 28 8 1.6483 -0.6552 -2.3276 29 1 -0.3633 0.6030 -0.8322 30 1 -0.3634 -1.0221 -0.1061 31 1 -0.3633 0.4193 0.9383 32 1 0.7740 0.8971 2.3383 33 1 -0.0686 2.4514 2.0545 34 1 -0.3580 2.8646 4.2118 35 1 0.9616 3.3617 5.3147 36 1 -0.0589 4.7984 2.8017 37 1 0.2291 5.4828 4.4338 38 1 2.6494 5.3133 4.2095 39 1 2.1324 5.8008 2.5651 40 1 4.3358 2.4606 2.7034 41 1 4.1750 3.4392 4.1815 42 1 4.4274 5.1886 1.9785 43 1 6.9512 7.1231 0.9711 44 1 1.5309 4.3424 0.9764 45 1 3.2053 3.7716 0.6995 46 1 2.3449 -0.0991 2.0277 47 1 1.3471 -1.5180 1.5645 48 1 4.2066 -0.8529 0.8031 49 1 3.4536 -2.4540 1.0669 50 1 3.5450 -2.1678 -1.4112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112528548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:12 Heat of formation + Delta-G solvation = -51.963406 kcal Electronic energy + Delta-G solvation = -31357.216904 eV Core-core repulsion = 27384.342962 eV Total energy + Delta-G solvation = -3972.873942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45417 -40.15804 -38.11824 -36.49066 -34.90333 -34.36234 -33.28416 -31.61472 -29.83138 -29.12001 -28.90475 -26.16369 -25.64456 -25.35108 -23.89090 -22.55005 -22.06798 -21.12459 -20.15852 -18.90558 -18.48081 -17.55910 -17.20910 -16.82080 -16.28358 -15.77453 -15.32778 -15.03248 -14.78643 -14.51139 -14.23634 -14.06172 -13.84463 -13.63879 -13.62459 -13.28174 -13.15600 -13.01663 -12.84516 -12.51157 -12.41084 -12.21043 -12.03580 -11.79103 -11.57640 -11.40008 -11.17273 -10.89400 -10.82872 -10.76840 -10.64421 -10.50333 -10.38529 -10.27258 -9.96470 -9.94046 -9.63963 -9.61366 -9.24724 -8.85601 -8.59476 -6.89588 -5.73872 -3.02377 2.33521 2.63895 3.01772 3.26741 3.45501 3.50107 3.51991 3.92484 4.11099 4.26788 4.38657 4.49635 4.61435 4.72069 4.73292 4.77573 5.01038 5.10146 5.17609 5.25276 5.26875 5.29503 5.31465 5.40425 5.48941 5.52129 5.54343 5.61289 5.63147 5.63769 5.72652 5.81985 5.89293 5.96473 6.03147 6.15386 6.17153 6.26145 6.27151 6.47051 6.51565 6.59915 6.61943 6.74938 6.81037 6.84027 7.62310 7.71380 8.12498 8.21710 8.44706 9.56189 10.13271 10.47710 11.48935 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004305 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.051141 B = 6502.984549 C = 8216.575864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.554 3.446 4 O -0.519 6.519 5 N -0.614 5.614 6 C 0.099 3.901 7 C -0.099 4.099 8 H 0.089 0.911 9 C -0.114 4.114 10 C -0.127 4.127 11 C -0.105 4.105 12 C -0.074 4.074 13 C 0.174 3.826 14 N -0.729 5.729 15 C -0.240 4.240 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.283 1.283 23 C 0.116 3.884 24 C -0.129 4.129 25 C 0.099 3.901 26 N -0.729 5.729 27 C 0.549 3.451 28 O -0.515 6.515 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.015 0.985 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 -15.157 6.686 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 C 0.340 3.660 4 O -0.393 6.393 5 N -0.348 5.348 6 C -0.024 4.024 7 C -0.119 4.119 8 H 0.107 0.893 9 C -0.152 4.152 10 C -0.164 4.164 11 C -0.142 4.142 12 C -0.075 4.075 13 C 0.046 3.954 14 N -0.373 5.373 15 C -0.371 4.371 16 H 0.086 0.914 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.005 4.005 24 C -0.166 4.166 25 C -0.026 4.026 26 N -0.385 5.385 27 C 0.333 3.667 28 O -0.389 6.389 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.096 0.904 49 H 0.104 0.896 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.196 -14.917 5.578 22.714 hybrid contribution 1.281 0.020 -0.247 1.304 sum -14.916 -14.896 5.331 21.744 Atomic orbital electron populations 1.21789 0.89838 1.03570 1.03730 1.21574 0.99496 0.94079 0.96971 1.19240 0.80306 0.85046 0.81382 1.90818 1.38617 1.76035 1.33877 1.48797 1.47374 1.16453 1.22187 1.22768 0.93722 1.00881 0.85024 1.22735 0.96156 0.97737 0.95297 0.89270 1.22353 0.97990 0.95792 0.99090 1.22686 0.97229 0.96204 1.00301 1.22471 0.94232 0.95874 1.01672 1.22271 0.96466 0.95011 0.93796 1.20552 0.86653 0.92445 0.95729 1.42321 1.03556 1.28578 1.62845 1.19170 0.83085 1.07712 1.27107 0.91368 1.24711 0.97841 0.97641 1.00547 1.69649 1.34282 1.15010 1.39024 0.86224 0.85863 0.76714 0.77581 1.21772 1.21787 1.20829 1.22562 1.00686 0.81451 0.95829 1.22913 0.97492 0.99713 0.96527 1.22112 0.98462 1.01781 0.80208 1.46045 1.37281 1.44400 1.10764 1.19918 0.79401 0.78837 0.88545 1.90731 1.61453 1.65589 1.21115 0.90971 0.91111 0.90563 0.90128 0.90728 0.91731 0.91252 0.91713 0.91700 0.90386 0.91272 0.96673 0.96091 0.78157 0.93514 0.91397 0.88427 0.88082 0.88634 0.90422 0.89634 0.74800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.13 37.16 0.30 -0.94 16 2 C -0.11 -1.39 0.55 -155.67 -0.09 -1.47 16 3 C 0.55 9.01 6.62 -10.98 -0.07 8.93 16 4 O -0.52 -11.38 16.41 5.56 0.09 -11.29 16 5 N -0.61 -8.60 3.19 -169.43 -0.54 -9.14 16 6 C 0.10 0.94 4.28 -2.45 -0.01 0.93 16 7 C -0.10 -1.03 3.59 -88.30 -0.32 -1.35 16 8 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 9 C -0.11 -0.99 6.08 -25.15 -0.15 -1.15 16 10 C -0.13 -1.29 6.86 -24.28 -0.17 -1.46 16 11 C -0.10 -1.46 5.19 -24.64 -0.13 -1.59 16 12 C -0.07 -1.08 0.62 -152.19 -0.09 -1.18 16 13 C 0.17 3.32 5.14 -4.04 -0.02 3.30 16 14 N -0.73 -17.96 4.93 -59.90 -0.30 -18.26 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 19 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.12 1.90 5.79 -2.46 -0.01 1.88 16 24 C -0.13 -1.04 5.11 -25.10 -0.13 -1.17 16 25 C 0.10 0.85 7.78 -3.12 -0.02 0.83 16 26 N -0.73 -8.17 6.24 -59.20 -0.37 -8.54 16 27 C 0.55 8.13 6.48 -10.86 -0.07 8.06 16 28 O -0.51 -9.67 17.87 5.56 0.10 -9.57 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.53 5.51 -51.93 -0.29 0.25 16 32 H 0.08 0.56 4.49 -51.93 -0.23 0.33 16 33 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 34 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16 35 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.20 7.96 -51.93 -0.41 0.78 16 39 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 10.00 6.91 -40.82 -0.28 9.72 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 45 H 0.10 2.07 7.04 -51.93 -0.37 1.70 16 46 H 0.10 0.81 6.18 -51.93 -0.32 0.49 16 47 H 0.10 0.49 7.91 -51.93 -0.41 0.08 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.41 3.90 8.96 -40.82 -0.37 3.53 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -37.17 383.34 -8.80 -45.98 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.04 Total: 8.64 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.23 Total: 6.38 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.48 Total: -63.55 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.19 Total: -20.85 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.17 -8.80 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112528548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.987 kcal (2) G-P(sol) polarization free energy of solvation -37.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds