Wall clock time and date at job start Tue Mar 31 2020 19:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 110.43657 * 2 1 4 4 O 1.21278 * 120.00562 * 242.05206 * 3 2 1 5 5 N 1.34781 * 119.99836 * 62.04971 * 3 2 1 6 6 C 1.48127 * 127.84074 * 355.02052 * 5 3 2 7 7 C 1.54325 * 104.69084 * 140.21831 * 6 5 3 8 8 H 1.08992 * 112.59785 * 262.03511 * 7 6 5 9 9 C 1.54164 * 108.85737 * 137.44728 * 7 6 5 10 10 C 1.54838 * 104.32727 * 271.23923 * 9 7 6 11 11 C 1.55772 * 102.31557 * 321.12912 * 10 9 7 12 12 C 1.54164 * 103.87959 * 39.35061 * 11 10 9 13 13 C 1.53008 * 111.81796 * 212.53856 * 12 11 10 14 14 N 1.46498 * 109.47006 * 299.25570 * 13 12 11 15 15 C 1.36940 * 119.99786 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99983 * 359.72206 * 15 14 13 17 17 C 1.38806 * 119.99969 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00019 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00034 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47016 * 90.00301 * 19 17 15 21 21 H 1.48497 * 109.47210 * 210.00065 * 19 17 15 22 22 H 1.48498 * 109.46837 * 330.00091 * 19 17 15 23 23 C 1.48113 * 127.84598 * 174.97662 * 5 3 2 24 24 C 1.54623 * 110.48844 * 122.54069 * 2 1 3 25 25 C 1.54482 * 101.76515 * 143.60917 * 24 2 1 26 26 N 1.46766 * 105.47415 * 334.58474 * 25 24 2 27 27 C 1.34424 * 111.30051 * 17.01919 * 26 25 24 28 28 O 1.21273 * 124.94465 * 179.62869 * 27 26 25 29 29 H 1.08999 * 109.46948 * 54.07282 * 1 2 3 30 30 H 1.08994 * 109.47354 * 174.07367 * 1 2 3 31 31 H 1.09002 * 109.46909 * 294.07699 * 1 2 3 32 32 H 1.09000 * 110.39108 * 21.41817 * 6 5 3 33 33 H 1.08994 * 110.39178 * 259.02182 * 6 5 3 34 34 H 1.08999 * 110.46448 * 29.95452 * 9 7 6 35 35 H 1.09007 * 110.45734 * 152.40195 * 9 7 6 36 36 H 1.09005 * 110.75964 * 80.12507 * 10 9 7 37 37 H 1.09005 * 110.75980 * 203.31398 * 10 9 7 38 38 H 1.09000 * 111.74889 * 280.25096 * 11 10 9 39 39 H 1.09005 * 109.59924 * 157.39389 * 11 10 9 40 40 H 1.09003 * 109.46803 * 179.25604 * 13 12 11 41 41 H 1.08999 * 109.47252 * 59.25752 * 13 12 11 42 42 H 0.96996 * 120.00293 * 359.97438 * 14 13 12 43 43 H 0.97000 * 119.99907 * 180.02562 * 18 17 15 44 44 H 1.09002 * 110.39243 * 100.97841 * 23 5 3 45 45 H 1.09002 * 110.39233 * 338.59055 * 23 5 3 46 46 H 1.08999 * 110.97645 * 261.72751 * 24 2 1 47 47 H 1.08999 * 110.96882 * 25.49777 * 24 2 1 48 48 H 1.09002 * 110.24864 * 93.58835 * 25 24 2 49 49 H 1.09004 * 110.24824 * 215.58916 * 25 24 2 50 50 H 0.96997 * 124.35227 * 197.00911 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7292 1.8086 -0.9278 5 7 1.7788 2.2347 1.0311 6 6 0.8994 1.9701 2.1934 7 6 1.6416 2.5919 3.3952 8 1 2.2088 1.8551 3.9639 9 6 0.6219 3.3371 4.2792 10 6 0.5751 4.7673 3.6878 11 6 2.0689 5.0287 3.3319 12 6 2.5589 3.6765 2.7768 13 6 4.0338 3.4297 3.1007 14 7 4.8503 4.4829 2.4922 15 6 6.2108 4.4704 2.6478 16 1 6.6814 3.6867 3.2229 17 6 6.9845 5.4680 2.0708 18 7 6.4104 6.4262 1.3746 19 14 8.8403 5.4515 2.2837 20 1 9.4584 4.6769 1.1778 21 1 9.3537 6.8446 2.2595 22 1 9.1838 4.8198 3.5830 23 6 2.2847 3.6078 1.2597 24 6 2.0712 -0.7791 1.2210 25 6 3.3218 -1.4650 0.6279 26 7 3.0601 -1.5792 -0.8117 27 6 2.0622 -0.7632 -1.1929 28 8 1.6483 -0.6552 -2.3276 29 1 -0.3633 0.6030 -0.8322 30 1 -0.3634 -1.0221 -0.1061 31 1 -0.3633 0.4193 0.9383 32 1 0.7740 0.8971 2.3383 33 1 -0.0686 2.4514 2.0545 34 1 -0.3580 2.8646 4.2118 35 1 0.9616 3.3617 5.3147 36 1 -0.0589 4.7984 2.8017 37 1 0.2291 5.4828 4.4338 38 1 2.6494 5.3133 4.2095 39 1 2.1324 5.8008 2.5651 40 1 4.3358 2.4606 2.7034 41 1 4.1750 3.4392 4.1815 42 1 4.4274 5.1886 1.9785 43 1 6.9512 7.1231 0.9711 44 1 1.5309 4.3424 0.9764 45 1 3.2053 3.7716 0.6995 46 1 2.3449 -0.0991 2.0277 47 1 1.3471 -1.5180 1.5645 48 1 4.2066 -0.8529 0.8031 49 1 3.4536 -2.4540 1.0669 50 1 3.5450 -2.1678 -1.4112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112528548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:10 Heat of formation + Delta-G solvation = -81.397338 kcal Electronic energy + Delta-G solvation = -31358.493255 eV Core-core repulsion = 27384.342962 eV Total energy + Delta-G solvation = -3974.150293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.50024 -41.22096 -39.38277 -37.57510 -36.50531 -35.72475 -34.21635 -33.41170 -31.06649 -30.31716 -29.80369 -27.54589 -26.63212 -26.42709 -25.44562 -23.82187 -23.14369 -22.18838 -21.07947 -20.00093 -19.78592 -19.05601 -18.51240 -17.87083 -17.50851 -16.98182 -16.69821 -16.20257 -15.97986 -15.74470 -15.52287 -15.10263 -15.03929 -15.00108 -14.87314 -14.61642 -14.50534 -14.04536 -13.83328 -13.58438 -13.36486 -13.27216 -13.07254 -13.05000 -12.92814 -12.75441 -12.50384 -12.21496 -12.18252 -12.08844 -11.70886 -11.68067 -11.61373 -11.48570 -11.43828 -11.30509 -11.06122 -10.95245 -10.80372 -10.17681 -9.79534 -8.99370 -7.96530 -5.24317 1.20471 1.42522 1.44063 1.45438 1.53220 1.97185 2.34350 2.53564 3.01423 3.26396 3.37037 3.39457 3.47285 3.62377 3.73767 3.81453 4.04483 4.18718 4.22817 4.25839 4.27442 4.32373 4.48023 4.50691 4.54503 4.61553 4.68029 4.68897 4.72582 4.77688 4.80976 4.88217 4.94847 5.00383 5.02187 5.09081 5.12713 5.15520 5.25569 5.33362 5.35950 5.42534 5.45981 5.55551 5.59678 5.72867 5.89815 6.25648 6.49094 6.98790 7.12313 7.31977 8.10113 8.31440 9.27284 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004305 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.051141 B = 6502.984549 C = 8216.575864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C 0.544 3.456 4 O -0.596 6.596 5 N -0.608 5.608 6 C 0.094 3.906 7 C -0.090 4.090 8 H 0.105 0.895 9 C -0.104 4.104 10 C -0.118 4.118 11 C -0.107 4.107 12 C -0.069 4.069 13 C 0.173 3.827 14 N -0.741 5.741 15 C -0.242 4.242 16 H 0.075 0.925 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.970 3.030 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.264 1.264 23 C 0.119 3.881 24 C -0.119 4.119 25 C 0.091 3.909 26 N -0.721 5.721 27 C 0.531 3.469 28 O -0.571 6.571 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.005 0.995 41 H 0.030 0.970 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.107 0.893 47 H 0.145 0.855 48 H 0.055 0.945 49 H 0.131 0.869 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 -18.164 10.503 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 C 0.332 3.668 4 O -0.476 6.476 5 N -0.340 5.340 6 C -0.026 4.026 7 C -0.109 4.109 8 H 0.123 0.877 9 C -0.141 4.141 10 C -0.156 4.156 11 C -0.145 4.145 12 C -0.070 4.070 13 C 0.047 3.953 14 N -0.384 5.384 15 C -0.374 4.374 16 H 0.093 0.907 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.800 3.200 20 H -0.221 1.221 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.004 4.004 24 C -0.156 4.156 25 C -0.032 4.032 26 N -0.376 5.376 27 C 0.315 3.685 28 O -0.449 6.449 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.048 0.952 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.126 0.874 47 H 0.163 0.837 48 H 0.074 0.926 49 H 0.149 0.851 50 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -18.689 -17.987 9.513 27.628 hybrid contribution 2.104 0.961 -1.437 2.723 sum -16.585 -17.026 8.076 25.103 Atomic orbital electron populations 1.21875 0.87407 1.04883 1.04406 1.21599 1.01254 0.90939 0.97774 1.20141 0.79231 0.86791 0.80589 1.90779 1.42221 1.77744 1.36906 1.48867 1.47199 1.15030 1.22890 1.23208 0.93449 1.03750 0.82195 1.22769 0.95712 0.96544 0.95889 0.87708 1.22358 0.99134 0.93969 0.98659 1.22663 0.93690 0.98051 1.01169 1.22432 0.97499 0.94661 0.99933 1.22155 0.94446 0.97562 0.92857 1.20716 0.89042 0.90179 0.95346 1.42549 1.03266 1.29582 1.62963 1.19620 0.84742 1.07175 1.25848 0.90700 1.25549 1.02370 0.97804 1.01155 1.69823 1.35649 1.15924 1.40734 0.85180 0.80481 0.76389 0.77989 1.22143 1.22076 1.18823 1.22336 0.98251 0.83451 0.96388 1.23108 0.97869 1.00138 0.94485 1.22406 0.98126 1.04070 0.78616 1.46178 1.35859 1.43179 1.12336 1.20579 0.79971 0.79216 0.88686 1.90684 1.63479 1.67405 1.23366 0.93765 0.88768 0.87099 0.86167 0.88161 0.87935 0.90467 0.90897 0.90472 0.92135 0.94086 0.97675 0.95222 0.79540 0.94173 0.90777 0.94596 0.87421 0.83728 0.92615 0.85097 0.74220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.13 71.98 0.59 -1.43 16 2 C -0.11 -2.45 0.55 -52.94 -0.03 -2.48 16 3 C 0.54 18.01 6.62 87.66 0.58 18.59 16 4 O -0.60 -28.33 16.41 -3.02 -0.05 -28.38 16 5 N -0.61 -16.55 3.19 -808.34 -2.58 -19.13 16 6 C 0.09 1.35 4.28 86.52 0.37 1.72 16 7 C -0.09 -1.49 3.59 -9.29 -0.03 -1.52 16 8 H 0.10 1.51 7.88 -2.39 -0.02 1.49 16 9 C -0.10 -1.23 6.08 31.62 0.19 -1.03 16 10 C -0.12 -2.03 6.86 32.18 0.22 -1.81 16 11 C -0.11 -2.98 5.19 31.95 0.17 -2.82 16 12 C -0.07 -1.98 0.62 -50.68 -0.03 -2.02 16 13 C 0.17 6.73 5.14 86.38 0.44 7.18 16 14 N -0.74 -38.35 4.93 -343.44 -1.69 -40.04 16 15 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 18 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 19 Si 0.97 47.78 29.55 68.60 2.03 49.80 16 20 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.12 4.04 5.79 86.52 0.50 4.54 16 24 C -0.12 -1.40 5.11 31.65 0.16 -1.24 16 25 C 0.09 1.32 7.78 86.83 0.68 1.99 16 26 N -0.72 -15.63 6.24 -459.79 -2.87 -18.50 16 27 C 0.53 15.82 6.48 87.90 0.57 16.39 16 28 O -0.57 -22.55 17.87 -3.01 -0.05 -22.61 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.90 5.51 -2.39 -0.01 0.89 16 32 H 0.12 0.84 4.49 -2.39 -0.01 0.83 16 33 H 0.10 1.05 7.61 -2.39 -0.02 1.03 16 34 H 0.10 0.58 7.74 -2.39 -0.02 0.56 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.06 1.88 7.96 -2.39 -0.02 1.86 16 39 H 0.04 1.34 7.79 -2.38 -0.02 1.32 16 40 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.37 20.82 6.91 -92.71 -0.64 20.18 16 43 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.07 2.37 7.67 -2.39 -0.02 2.35 16 45 H 0.04 1.67 7.04 -2.39 -0.02 1.65 16 46 H 0.11 1.19 6.18 -2.39 -0.01 1.17 16 47 H 0.14 0.40 7.91 -2.39 -0.02 0.38 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.42 7.81 8.96 -92.71 -0.83 6.98 16 Total: -1.00 -92.95 383.34 0.24 -92.71 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.50 Total: 28.82 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.68 Total: 18.93 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -6.86 Total: -139.28 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.10 Total: -50.98 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -92.95 0.24 -92.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112528548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.310 kcal (2) G-P(sol) polarization free energy of solvation -92.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds