Wall clock time and date at job start Tue Mar 31 2020 19:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.43503 * 2 1 4 4 O 1.21291 * 120.00095 * 236.36291 * 3 2 1 5 5 N 1.34771 * 120.00224 * 56.36124 * 3 2 1 6 6 C 1.48114 * 127.84224 * 354.80173 * 5 3 2 7 7 C 1.54334 * 104.69294 * 140.29441 * 6 5 3 8 8 H 1.09001 * 112.59183 * 262.03184 * 7 6 5 9 9 C 1.54161 * 109.65758 * 137.80336 * 7 6 5 10 10 C 1.54843 * 104.32581 * 223.42017 * 9 7 6 11 11 C 1.54843 * 102.73272 * 38.18781 * 10 9 7 12 12 C 1.54159 * 104.32872 * 321.80940 * 11 10 9 13 13 C 1.53003 * 111.82484 * 261.24856 * 12 11 10 14 14 N 1.46499 * 109.47159 * 298.98340 * 13 12 11 15 15 C 1.36929 * 119.99825 * 179.72318 * 14 13 12 16 16 H 1.08003 * 120.00481 * 0.27860 * 15 14 13 17 17 C 1.38815 * 119.99906 * 180.28100 * 15 14 13 18 18 N 1.31623 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47076 * 89.99722 * 19 17 15 21 21 H 1.48496 * 109.47476 * 209.99511 * 19 17 15 22 22 H 1.48499 * 109.47167 * 330.00039 * 19 17 15 23 23 C 1.50626 * 127.74341 * 175.17421 * 5 3 2 24 24 C 1.54632 * 110.59899 * 237.38074 * 2 1 3 25 25 C 1.54477 * 101.76528 * 216.46608 * 24 2 1 26 26 N 1.46764 * 105.47550 * 25.41762 * 25 24 2 27 27 C 1.34418 * 111.29769 * 342.98363 * 26 25 24 28 28 O 1.21280 * 124.94508 * 180.37429 * 27 26 25 29 29 H 1.08996 * 109.46945 * 60.70156 * 1 2 3 30 30 H 1.09001 * 109.46830 * 180.70456 * 1 2 3 31 31 H 1.08999 * 109.46892 * 300.70139 * 1 2 3 32 32 H 1.09001 * 110.39249 * 21.49294 * 6 5 3 33 33 H 1.08996 * 110.39728 * 259.09567 * 6 5 3 34 34 H 1.09005 * 110.46068 * 104.70532 * 9 7 6 35 35 H 1.08997 * 110.46193 * 342.13289 * 9 7 6 36 36 H 1.08992 * 110.75633 * 279.87182 * 10 9 7 37 37 H 1.08997 * 110.91491 * 156.56965 * 10 9 7 38 38 H 1.09001 * 110.45803 * 203.09976 * 11 10 9 39 39 H 1.08997 * 110.57015 * 80.58070 * 11 10 9 40 40 H 1.08995 * 109.46975 * 178.98575 * 13 12 11 41 41 H 1.09002 * 109.46739 * 58.98887 * 13 12 11 42 42 H 0.97001 * 119.99812 * 0.02562 * 14 13 12 43 43 H 0.96996 * 120.00025 * 180.02562 * 18 17 15 44 44 H 1.09001 * 110.78292 * 101.35852 * 23 5 3 45 45 H 1.09004 * 111.15515 * 338.16923 * 23 5 3 46 46 H 1.09000 * 110.96944 * 334.58810 * 24 2 1 47 47 H 1.09001 * 110.96970 * 98.34696 * 24 2 1 48 48 H 1.09003 * 110.24662 * 266.41535 * 25 24 2 49 49 H 1.09005 * 110.24604 * 144.41506 * 25 24 2 50 50 H 0.96995 * 124.35285 * 163.00574 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.8131 1.7773 -0.8745 5 7 1.6856 2.2694 0.9717 6 6 0.6985 2.0455 2.0531 7 6 1.3248 2.7084 3.2981 8 1 1.8325 1.9916 3.9435 9 6 0.2408 3.4826 4.0740 10 6 0.9216 4.8214 4.4506 11 6 1.7648 5.1414 3.1919 12 6 2.3008 3.7707 2.7332 13 6 3.7371 3.5348 3.2047 14 7 4.6128 4.5623 2.6357 15 6 5.9512 4.5578 2.9248 16 1 6.3622 3.7943 3.5687 17 6 6.7800 5.5348 2.3904 18 7 6.2794 6.4651 1.6053 19 14 8.6060 5.5284 2.7842 20 1 9.3276 4.7147 1.7730 21 1 9.1226 6.9204 2.7595 22 1 8.8194 4.9449 4.1329 23 6 2.1772 3.6751 1.1979 24 6 2.0740 -0.7803 -1.2192 25 6 3.3233 -1.4656 -0.6226 26 7 3.0583 -1.5786 0.8165 27 6 2.0595 -0.7623 1.1946 28 8 1.6430 -0.6532 2.3284 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 0.5560 0.9782 2.2222 33 1 -0.2502 2.5218 1.8060 34 1 -0.0486 2.9364 4.9719 35 1 -0.6273 3.6617 3.4396 36 1 1.5622 4.6969 5.3235 37 1 0.1789 5.5997 4.6261 38 1 2.5894 5.8077 3.4450 39 1 1.1414 5.5858 2.4161 40 1 4.0705 2.5506 2.8759 41 1 3.7754 3.5866 4.2929 42 1 4.2437 5.2482 2.0577 43 1 6.8585 7.1475 1.2315 44 1 1.4534 4.4019 0.8291 45 1 3.1481 3.8326 0.7281 46 1 1.3507 -1.5193 -1.5637 47 1 2.3496 -0.1009 -2.0258 48 1 4.2084 -0.8536 -0.7962 49 1 3.4561 -2.4550 -1.0604 50 1 3.5420 -2.1664 1.4176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112528549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:16 Heat of formation + Delta-G solvation = -47.193488 kcal Electronic energy + Delta-G solvation = -31557.506841 eV Core-core repulsion = 27584.839738 eV Total energy + Delta-G solvation = -3972.667103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42320 -39.88144 -38.24142 -36.45927 -34.81027 -34.24331 -33.27658 -31.51754 -29.63830 -29.37792 -28.61685 -26.09938 -25.57037 -25.20478 -23.61994 -22.48334 -22.01104 -21.05190 -20.21069 -18.63338 -18.30960 -17.55280 -17.48423 -16.81954 -16.12821 -15.69197 -15.16772 -15.06212 -14.67535 -14.52881 -14.38893 -13.92962 -13.76401 -13.67915 -13.21674 -13.16216 -13.03171 -12.83867 -12.77452 -12.52980 -12.44347 -12.17667 -11.87363 -11.50518 -11.39442 -11.31061 -11.13453 -10.86345 -10.79345 -10.68522 -10.45767 -10.40703 -10.28567 -10.15655 -9.88658 -9.76166 -9.61353 -9.54091 -9.29537 -8.80935 -8.48930 -6.84545 -5.70336 -2.98103 2.19502 2.70579 3.03200 3.20071 3.47682 3.52561 3.54106 4.01030 4.15434 4.35777 4.54619 4.62504 4.68488 4.78983 4.84718 4.91250 5.07942 5.28636 5.34529 5.37334 5.39981 5.47617 5.51637 5.54469 5.63084 5.65307 5.66123 5.74643 5.77502 5.81187 5.88131 5.96345 6.04194 6.06302 6.14706 6.24321 6.28627 6.35574 6.49157 6.52017 6.57143 6.60254 6.77761 6.79817 6.86309 6.93496 7.73354 7.76082 8.01468 8.22185 8.48591 9.59866 10.17387 10.52841 11.52634 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.004438 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.399455 B = 6307.978215 C = 7844.046881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.551 3.449 4 O -0.528 6.528 5 N -0.612 5.612 6 C 0.087 3.913 7 C -0.093 4.093 8 H 0.088 0.912 9 C -0.115 4.115 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.076 4.076 13 C 0.176 3.824 14 N -0.728 5.728 15 C -0.236 4.236 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C 0.117 3.883 24 C -0.117 4.117 25 C 0.098 3.902 26 N -0.726 5.726 27 C 0.535 3.465 28 O -0.514 6.514 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 -15.136 -2.576 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C 0.337 3.663 4 O -0.405 6.405 5 N -0.345 5.345 6 C -0.036 4.036 7 C -0.112 4.112 8 H 0.107 0.893 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.152 4.152 12 C -0.077 4.077 13 C 0.048 3.952 14 N -0.373 5.373 15 C -0.367 4.367 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.209 1.209 23 C -0.004 4.004 24 C -0.155 4.155 25 C -0.026 4.026 26 N -0.381 5.381 27 C 0.319 3.681 28 O -0.390 6.390 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.128 0.872 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.173 -14.920 -2.552 22.151 hybrid contribution 1.279 -0.040 0.214 1.297 sum -14.894 -14.959 -2.338 21.239 Atomic orbital electron populations 1.21940 0.89988 1.03537 1.04189 1.21586 0.99391 0.94318 0.97025 1.19195 0.81000 0.85013 0.81084 1.90736 1.36048 1.77507 1.36196 1.49481 1.41863 1.15161 1.27983 1.23071 0.90873 1.03646 0.85978 1.22649 0.95781 0.97040 0.95763 0.89335 1.22424 0.97156 0.96189 0.99491 1.22468 0.98558 0.96344 0.98452 1.22472 0.99640 0.96180 0.96881 1.22270 0.96497 0.95019 0.93891 1.20491 0.86564 0.92502 0.95641 1.42360 1.04864 1.31773 1.58315 1.19196 0.84369 1.09155 1.24025 0.91418 1.24699 0.97937 0.97958 1.00271 1.69652 1.34400 1.17215 1.36900 0.86215 0.85722 0.76673 0.77751 1.21822 1.21795 1.20856 1.23134 1.01285 0.80538 0.95396 1.22698 0.96598 0.99252 0.96934 1.22162 0.99110 1.01625 0.79701 1.46110 1.36900 1.43934 1.11156 1.20250 0.79686 0.79358 0.88771 1.90679 1.61321 1.65732 1.21226 0.90921 0.91200 0.90118 0.87304 0.91470 0.91795 0.91654 0.91425 0.91905 0.89766 0.91883 0.96696 0.96059 0.78170 0.93580 0.91094 0.88333 0.89268 0.87250 0.90132 0.89825 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.14 37.16 0.30 -1.00 16 2 C -0.12 -1.40 0.57 -155.67 -0.09 -1.49 16 3 C 0.55 8.95 6.70 -10.99 -0.07 8.88 16 4 O -0.53 -10.37 15.84 5.55 0.09 -10.28 16 5 N -0.61 -9.76 3.36 -167.30 -0.56 -10.33 16 6 C 0.09 1.15 4.63 -2.46 -0.01 1.14 16 7 C -0.09 -1.32 3.52 -88.30 -0.31 -1.63 16 8 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 9 C -0.11 -1.34 6.38 -25.15 -0.16 -1.50 16 10 C -0.12 -1.56 6.90 -24.79 -0.17 -1.73 16 11 C -0.11 -1.78 5.68 -25.15 -0.14 -1.93 16 12 C -0.08 -1.28 0.61 -152.19 -0.09 -1.37 16 13 C 0.18 3.78 5.20 -4.04 -0.02 3.76 16 14 N -0.73 -18.87 4.59 -59.91 -0.27 -19.15 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 19 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.12 2.07 6.07 -1.03 -0.01 2.07 16 24 C -0.12 -1.09 6.02 -25.10 -0.15 -1.24 16 25 C 0.10 0.88 7.78 -3.12 -0.02 0.86 16 26 N -0.73 -7.71 6.24 -59.20 -0.37 -8.07 16 27 C 0.54 7.06 6.97 -10.86 -0.08 6.98 16 28 O -0.51 -7.94 15.06 5.56 0.08 -7.86 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.79 4.72 -51.93 -0.25 0.55 16 32 H 0.11 1.45 3.19 -51.93 -0.17 1.29 16 33 H 0.07 0.75 7.24 -51.93 -0.38 0.38 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.67 7.25 -51.93 -0.38 0.30 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 39 H 0.06 0.90 7.19 -51.93 -0.37 0.53 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.38 10.33 6.60 -40.82 -0.27 10.06 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.13 7.20 -51.93 -0.37 0.76 16 45 H 0.10 2.16 7.02 -51.93 -0.36 1.80 16 46 H 0.09 0.58 7.92 -51.93 -0.41 0.17 16 47 H 0.11 1.15 6.98 -51.93 -0.36 0.79 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.41 3.68 8.96 -40.82 -0.37 3.32 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.88 378.40 -8.72 -43.60 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.82 Total: 11.97 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.27 Total: 4.34 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.48 Total: -65.54 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.88 -8.72 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112528549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.592 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds