Wall clock time and date at job start Tue Mar 31 2020 19:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.43503 * 2 1 4 4 O 1.21291 * 120.00095 * 236.36291 * 3 2 1 5 5 N 1.34771 * 120.00224 * 56.36124 * 3 2 1 6 6 C 1.48114 * 127.84224 * 354.80173 * 5 3 2 7 7 C 1.54334 * 104.69294 * 140.29441 * 6 5 3 8 8 H 1.09001 * 112.59183 * 262.03184 * 7 6 5 9 9 C 1.54161 * 109.65758 * 137.80336 * 7 6 5 10 10 C 1.54843 * 104.32581 * 223.42017 * 9 7 6 11 11 C 1.54843 * 102.73272 * 38.18781 * 10 9 7 12 12 C 1.54159 * 104.32872 * 321.80940 * 11 10 9 13 13 C 1.53003 * 111.82484 * 261.24856 * 12 11 10 14 14 N 1.46499 * 109.47159 * 298.98340 * 13 12 11 15 15 C 1.36929 * 119.99825 * 179.72318 * 14 13 12 16 16 H 1.08003 * 120.00481 * 0.27860 * 15 14 13 17 17 C 1.38815 * 119.99906 * 180.28100 * 15 14 13 18 18 N 1.31623 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47076 * 89.99722 * 19 17 15 21 21 H 1.48496 * 109.47476 * 209.99511 * 19 17 15 22 22 H 1.48499 * 109.47167 * 330.00039 * 19 17 15 23 23 C 1.50626 * 127.74341 * 175.17421 * 5 3 2 24 24 C 1.54632 * 110.59899 * 237.38074 * 2 1 3 25 25 C 1.54477 * 101.76528 * 216.46608 * 24 2 1 26 26 N 1.46764 * 105.47550 * 25.41762 * 25 24 2 27 27 C 1.34418 * 111.29769 * 342.98363 * 26 25 24 28 28 O 1.21280 * 124.94508 * 180.37429 * 27 26 25 29 29 H 1.08996 * 109.46945 * 60.70156 * 1 2 3 30 30 H 1.09001 * 109.46830 * 180.70456 * 1 2 3 31 31 H 1.08999 * 109.46892 * 300.70139 * 1 2 3 32 32 H 1.09001 * 110.39249 * 21.49294 * 6 5 3 33 33 H 1.08996 * 110.39728 * 259.09567 * 6 5 3 34 34 H 1.09005 * 110.46068 * 104.70532 * 9 7 6 35 35 H 1.08997 * 110.46193 * 342.13289 * 9 7 6 36 36 H 1.08992 * 110.75633 * 279.87182 * 10 9 7 37 37 H 1.08997 * 110.91491 * 156.56965 * 10 9 7 38 38 H 1.09001 * 110.45803 * 203.09976 * 11 10 9 39 39 H 1.08997 * 110.57015 * 80.58070 * 11 10 9 40 40 H 1.08995 * 109.46975 * 178.98575 * 13 12 11 41 41 H 1.09002 * 109.46739 * 58.98887 * 13 12 11 42 42 H 0.97001 * 119.99812 * 0.02562 * 14 13 12 43 43 H 0.96996 * 120.00025 * 180.02562 * 18 17 15 44 44 H 1.09001 * 110.78292 * 101.35852 * 23 5 3 45 45 H 1.09004 * 111.15515 * 338.16923 * 23 5 3 46 46 H 1.09000 * 110.96944 * 334.58810 * 24 2 1 47 47 H 1.09001 * 110.96970 * 98.34696 * 24 2 1 48 48 H 1.09003 * 110.24662 * 266.41535 * 25 24 2 49 49 H 1.09005 * 110.24604 * 144.41506 * 25 24 2 50 50 H 0.96995 * 124.35285 * 163.00574 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.8131 1.7773 -0.8745 5 7 1.6856 2.2694 0.9717 6 6 0.6985 2.0455 2.0531 7 6 1.3248 2.7084 3.2981 8 1 1.8325 1.9916 3.9435 9 6 0.2408 3.4826 4.0740 10 6 0.9216 4.8214 4.4506 11 6 1.7648 5.1414 3.1919 12 6 2.3008 3.7707 2.7332 13 6 3.7371 3.5348 3.2047 14 7 4.6128 4.5623 2.6357 15 6 5.9512 4.5578 2.9248 16 1 6.3622 3.7943 3.5687 17 6 6.7800 5.5348 2.3904 18 7 6.2794 6.4651 1.6053 19 14 8.6060 5.5284 2.7842 20 1 9.3276 4.7147 1.7730 21 1 9.1226 6.9204 2.7595 22 1 8.8194 4.9449 4.1329 23 6 2.1772 3.6751 1.1979 24 6 2.0740 -0.7803 -1.2192 25 6 3.3233 -1.4656 -0.6226 26 7 3.0583 -1.5786 0.8165 27 6 2.0595 -0.7623 1.1946 28 8 1.6430 -0.6532 2.3284 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 0.5560 0.9782 2.2222 33 1 -0.2502 2.5218 1.8060 34 1 -0.0486 2.9364 4.9719 35 1 -0.6273 3.6617 3.4396 36 1 1.5622 4.6969 5.3235 37 1 0.1789 5.5997 4.6261 38 1 2.5894 5.8077 3.4450 39 1 1.1414 5.5858 2.4161 40 1 4.0705 2.5506 2.8759 41 1 3.7754 3.5866 4.2929 42 1 4.2437 5.2482 2.0577 43 1 6.8585 7.1475 1.2315 44 1 1.4534 4.4019 0.8291 45 1 3.1481 3.8326 0.7281 46 1 1.3507 -1.5193 -1.5637 47 1 2.3496 -0.1009 -2.0258 48 1 4.2084 -0.8536 -0.7962 49 1 3.4561 -2.4550 -1.0604 50 1 3.5420 -2.1664 1.4176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112528549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:15 Heat of formation + Delta-G solvation = -72.981592 kcal Electronic energy + Delta-G solvation = -31558.625097 eV Core-core repulsion = 27584.839738 eV Total energy + Delta-G solvation = -3973.785359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.47612 -41.09550 -39.49557 -37.45239 -36.51508 -35.74155 -34.22419 -33.43292 -31.09820 -30.58697 -29.63666 -27.55840 -26.74378 -26.40146 -25.28095 -23.95211 -22.99609 -22.16322 -21.38353 -19.89538 -19.72528 -19.15315 -18.46349 -18.24359 -17.31823 -16.90157 -16.69547 -16.34747 -16.21964 -15.78948 -15.43944 -15.22469 -15.03477 -14.91366 -14.73647 -14.61241 -14.43863 -14.15965 -13.66766 -13.65318 -13.38474 -13.21130 -13.12898 -13.09555 -12.91196 -12.69235 -12.34077 -12.22000 -12.18900 -12.14905 -11.89274 -11.81181 -11.75002 -11.51316 -11.43658 -11.38061 -11.00959 -10.82381 -10.76421 -10.18350 -9.77812 -9.04807 -7.99592 -5.28453 1.09535 1.40900 1.43564 1.51954 1.54385 1.88891 2.30943 2.50811 3.12748 3.20196 3.32558 3.35677 3.44582 3.60888 3.65771 3.85382 4.04556 4.12989 4.13941 4.24479 4.30378 4.33572 4.41033 4.43418 4.52224 4.63354 4.66186 4.70445 4.72433 4.78091 4.82476 4.85177 4.91678 4.95688 5.00170 5.02558 5.08784 5.14463 5.19834 5.24172 5.28851 5.39097 5.42737 5.46754 5.55509 5.65961 5.89219 6.22168 6.50286 6.96256 7.07884 7.28730 8.02420 8.29067 9.23738 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.004438 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.399455 B = 6307.978215 C = 7844.046881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.539 3.461 4 O -0.575 6.575 5 N -0.615 5.615 6 C 0.091 3.909 7 C -0.089 4.089 8 H 0.071 0.929 9 C -0.102 4.102 10 C -0.115 4.115 11 C -0.111 4.111 12 C -0.071 4.071 13 C 0.181 3.819 14 N -0.735 5.735 15 C -0.251 4.251 16 H 0.066 0.934 17 C -0.069 4.069 18 N -0.965 5.965 19 Si 0.973 3.027 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.270 1.270 23 C 0.119 3.881 24 C -0.113 4.113 25 C 0.095 3.905 26 N -0.719 5.719 27 C 0.525 3.475 28 O -0.542 6.542 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.080 0.920 40 H -0.012 1.012 41 H 0.019 0.981 42 H 0.377 0.623 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.129 0.871 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.126 0.874 50 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 -16.793 -2.233 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C 0.327 3.673 4 O -0.455 6.455 5 N -0.347 5.347 6 C -0.030 4.030 7 C -0.109 4.109 8 H 0.089 0.911 9 C -0.140 4.140 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.072 4.072 13 C 0.055 3.945 14 N -0.378 5.378 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.262 4.262 18 N -0.615 5.615 19 Si 0.801 3.199 20 H -0.217 1.217 21 H -0.215 1.215 22 H -0.195 1.195 23 C -0.003 4.003 24 C -0.150 4.150 25 C -0.028 4.028 26 N -0.374 5.374 27 C 0.309 3.691 28 O -0.420 6.420 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.006 0.994 41 H 0.037 0.963 42 H 0.210 0.790 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.147 0.853 47 H 0.113 0.887 48 H 0.074 0.926 49 H 0.144 0.856 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.575 -16.625 -2.182 25.024 hybrid contribution 2.094 0.447 0.095 2.143 sum -16.482 -16.177 -2.087 23.189 Atomic orbital electron populations 1.21994 0.87519 1.05283 1.04561 1.21653 1.01332 0.91179 0.97803 1.20080 0.80267 0.86639 0.80300 1.90706 1.38031 1.78733 1.38031 1.49640 1.42189 1.14339 1.28545 1.23270 0.91125 1.04303 0.84330 1.22635 0.95875 0.96038 0.96363 0.91065 1.22405 0.96576 0.94692 1.00292 1.22449 0.98498 0.98030 0.96247 1.22424 0.99109 0.94381 0.99008 1.22156 0.94156 0.97331 0.93604 1.20495 0.89045 0.89936 0.95071 1.42476 1.04661 1.32390 1.58276 1.19554 0.85909 1.09037 1.23765 0.91553 1.25534 1.02443 0.97767 1.00468 1.69809 1.35837 1.17868 1.38022 0.85158 0.80129 0.76640 0.77941 1.21662 1.21472 1.19494 1.22963 0.99307 0.82594 0.95431 1.22794 0.97415 0.99445 0.95371 1.22321 0.98124 1.03515 0.78861 1.46186 1.35930 1.43171 1.12119 1.20532 0.80185 0.79693 0.88677 1.90651 1.62429 1.66739 1.22192 0.89796 0.88746 0.90491 0.86817 0.88160 0.89870 0.88947 0.92658 0.89330 0.93507 0.90106 0.99379 0.96294 0.79046 0.93852 0.89046 0.93573 0.85292 0.88736 0.92579 0.85604 0.73921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.14 71.98 0.59 -1.57 16 2 C -0.11 -2.58 0.57 -52.93 -0.03 -2.61 16 3 C 0.54 17.84 6.70 87.66 0.59 18.43 16 4 O -0.58 -23.80 15.84 -3.06 -0.05 -23.84 16 5 N -0.62 -19.76 3.36 -801.62 -2.69 -22.45 16 6 C 0.09 2.24 4.63 86.52 0.40 2.64 16 7 C -0.09 -2.44 3.52 -9.29 -0.03 -2.48 16 8 H 0.07 2.21 7.88 -2.39 -0.02 2.19 16 9 C -0.10 -2.03 6.38 31.62 0.20 -1.83 16 10 C -0.11 -2.72 6.90 31.85 0.22 -2.50 16 11 C -0.11 -3.47 5.68 31.62 0.18 -3.29 16 12 C -0.07 -2.47 0.61 -50.68 -0.03 -2.50 16 13 C 0.18 8.26 5.20 86.38 0.45 8.71 16 14 N -0.73 -40.32 4.59 -343.45 -1.58 -41.89 16 15 C -0.25 -15.08 9.99 84.04 0.84 -14.24 16 16 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 19 Si 0.97 48.50 29.55 68.60 2.03 50.52 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.12 4.36 6.07 86.02 0.52 4.88 16 24 C -0.11 -1.90 6.02 31.65 0.19 -1.71 16 25 C 0.10 1.58 7.78 86.83 0.68 2.26 16 26 N -0.72 -14.56 6.24 -459.80 -2.87 -17.43 16 27 C 0.52 13.37 6.97 87.90 0.61 13.98 16 28 O -0.54 -16.34 15.06 -3.03 -0.05 -16.39 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.28 4.72 -2.39 -0.01 1.27 16 32 H 0.11 2.81 3.19 -2.39 -0.01 2.81 16 33 H 0.10 1.85 7.24 -2.39 -0.02 1.84 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.41 7.25 -2.39 -0.02 1.40 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.81 7.16 -2.39 -0.02 1.79 16 39 H 0.08 2.21 7.19 -2.39 -0.02 2.20 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.38 21.58 6.60 -92.71 -0.61 20.97 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.09 2.92 7.20 -2.39 -0.02 2.90 16 45 H 0.05 2.18 7.02 -2.38 -0.02 2.16 16 46 H 0.13 1.16 7.92 -2.39 -0.02 1.14 16 47 H 0.09 1.95 6.98 -2.39 -0.02 1.93 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.42 7.12 8.96 -92.71 -0.83 6.29 16 Total: -1.00 -81.12 378.40 0.45 -80.67 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.47 Total: 37.52 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.84 Total: 14.43 kcal Atomic # 7 Polarization: -136.06 SS G_CDS: -6.86 Total: -142.92 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.09 Total: -40.23 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.52 kcal Total: -81.12 0.45 -80.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112528549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.692 kcal (2) G-P(sol) polarization free energy of solvation -81.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds