Wall clock time and date at job start Tue Mar 31 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.63922 * 2 1 4 4 O 1.21286 * 120.00287 * 127.58639 * 3 2 1 5 5 N 1.34779 * 120.00177 * 307.57705 * 3 2 1 6 6 C 1.47076 * 120.87773 * 355.06560 * 5 3 2 7 7 C 1.53245 * 108.52084 * 231.15916 * 6 5 3 8 8 N 1.46895 * 109.33754 * 306.17083 * 7 6 5 9 9 C 1.46903 * 110.99982 * 187.25244 * 8 7 6 10 10 C 1.50699 * 109.47086 * 170.00148 * 9 8 7 11 11 O 1.21287 * 120.00374 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99601 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99635 * 179.72377 * 12 10 9 14 14 H 1.07996 * 120.00070 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99816 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00188 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46985 * 89.99606 * 17 15 13 19 19 H 1.48498 * 109.47324 * 209.99625 * 17 15 13 20 20 H 1.48504 * 109.47393 * 329.99701 * 17 15 13 21 21 C 1.46904 * 111.27005 * 63.10472 * 8 7 6 22 22 C 1.47080 * 120.88290 * 175.03793 * 5 3 2 23 23 C 1.53016 * 109.81692 * 239.46918 * 2 1 3 24 24 C 1.50069 * 110.14713 * 289.64654 * 23 2 1 25 25 C 1.29438 * 124.07740 * 342.87039 * 24 23 2 26 26 C 1.50066 * 124.07347 * 0.46983 * 25 24 23 27 27 C 1.53024 * 110.15052 * 342.86600 * 26 25 24 28 28 H 1.08994 * 109.47346 * 52.73971 * 1 2 3 29 29 H 1.09001 * 109.47510 * 172.74235 * 1 2 3 30 30 H 1.09000 * 109.47633 * 292.73900 * 1 2 3 31 31 H 1.09005 * 109.63263 * 111.44838 * 6 5 3 32 32 H 1.08996 * 109.62993 * 350.86484 * 6 5 3 33 33 H 1.08996 * 109.49287 * 186.20934 * 7 6 5 34 34 H 1.08997 * 109.51408 * 66.14114 * 7 6 5 35 35 H 1.08999 * 109.47248 * 49.99754 * 9 8 7 36 36 H 1.09007 * 109.47205 * 290.00056 * 9 8 7 37 37 H 0.96997 * 119.99943 * 359.97438 * 12 10 9 38 38 H 0.97000 * 120.00306 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.49021 * 56.85672 * 21 8 7 40 40 H 1.09006 * 109.49272 * 176.93541 * 21 8 7 41 41 H 1.08997 * 109.62834 * 248.54702 * 22 5 3 42 42 H 1.08992 * 109.63036 * 9.12897 * 22 5 3 43 43 H 1.08997 * 109.36267 * 49.85521 * 23 2 1 44 44 H 1.09008 * 109.35785 * 169.44295 * 23 2 1 45 45 H 1.08004 * 117.96168 * 162.89534 * 24 23 2 46 46 H 1.07995 * 117.96593 * 180.49003 * 25 24 23 47 47 H 1.09008 * 109.35768 * 222.66066 * 26 25 24 48 48 H 1.09000 * 109.35976 * 103.07612 * 26 25 24 49 49 H 1.09006 * 109.64052 * 289.75340 * 27 26 25 50 50 H 1.08995 * 109.82112 * 169.22801 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0364 1.4193 0.0000 4 8 2.8436 1.7752 0.8323 5 7 1.5925 2.2933 -0.9250 6 6 0.6978 1.8569 -2.0077 7 6 1.2814 2.3318 -3.3427 8 7 1.5218 3.7796 -3.2810 9 6 1.9190 4.3037 -4.5946 10 6 1.9180 5.8102 -4.5556 11 8 1.6156 6.3903 -3.5342 12 7 2.2521 6.5130 -5.6561 13 6 2.2457 7.8836 -5.6222 14 1 1.9725 8.4000 -4.7139 15 6 2.5896 8.6082 -6.7569 16 7 2.9214 7.9798 -7.8622 17 14 2.5802 10.4756 -6.7109 18 1 3.9181 10.9672 -6.2944 19 1 2.2576 11.0024 -8.0613 20 1 1.5573 10.9418 -5.7405 21 6 2.5224 4.1106 -2.2577 22 6 1.9896 3.7087 -0.8783 23 6 2.0487 -0.7313 -1.2400 24 6 1.7783 -2.2028 -1.1231 25 6 1.4897 -2.8012 -0.0122 26 6 1.3752 -2.1054 1.3125 27 6 2.0455 -0.7314 1.2459 28 1 -0.3634 0.6221 -0.8179 29 1 -0.3634 -1.0194 -0.1298 30 1 -0.3634 0.3972 0.9478 31 1 -0.2907 2.2935 -1.8643 32 1 0.6245 0.7694 -2.0063 33 1 0.5772 2.1138 -4.1456 34 1 2.2218 1.8148 -3.5334 35 1 1.2142 3.9594 -5.3515 36 1 2.9193 3.9473 -4.8407 37 1 2.4935 6.0492 -6.4730 38 1 3.1619 8.4856 -8.6542 39 1 3.4456 3.5688 -2.4631 40 1 2.7182 5.1828 -2.2737 41 1 1.1254 4.3232 -0.6263 42 1 2.7703 3.8454 -0.1301 43 1 1.5475 -0.3411 -2.1257 44 1 3.1224 -0.5676 -1.3332 45 1 1.8280 -2.7997 -2.0218 46 1 1.3211 -3.8675 -0.0403 47 1 1.8612 -2.7077 2.0801 48 1 0.3223 -1.9818 1.5659 49 1 3.1265 -0.8540 1.1777 50 1 1.7978 -0.1557 2.1376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112879769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:53 Heat of formation + Delta-G solvation = -29.959019 kcal Electronic energy + Delta-G solvation = -29988.548688 eV Core-core repulsion = 26016.628928 eV Total energy + Delta-G solvation = -3971.919760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.22540 -39.06378 -38.11385 -37.21036 -34.70040 -33.80195 -32.80771 -31.41566 -31.24373 -30.60081 -28.81605 -27.50201 -25.91645 -24.23653 -23.87700 -23.51403 -22.56824 -20.68186 -19.37836 -19.02729 -17.91318 -17.65080 -17.07980 -16.56941 -16.07556 -15.53899 -15.36928 -15.09951 -14.82471 -14.72803 -14.54665 -14.36023 -14.03547 -13.80062 -13.68523 -13.60681 -13.38884 -13.19982 -12.76453 -12.56129 -12.37319 -12.26475 -11.96377 -11.68397 -11.57921 -11.50285 -11.37631 -11.20386 -11.13254 -11.02542 -10.90041 -10.76841 -10.44038 -10.40228 -10.23447 -9.61911 -9.48289 -9.30581 -8.84243 -8.37553 -8.00620 -7.90879 -6.43641 -3.84412 1.95299 2.55215 2.90183 3.16648 3.25644 3.31374 3.86296 3.91175 4.11290 4.20812 4.26917 4.47429 4.62349 4.81282 4.81985 4.88153 4.95051 5.00642 5.01470 5.10033 5.17424 5.22390 5.28158 5.30246 5.33764 5.43845 5.50356 5.53078 5.58910 5.63210 5.66884 5.72758 5.78151 5.80205 5.85770 5.89334 5.93659 6.03816 6.14724 6.22547 6.23439 6.32204 6.54531 6.60634 7.13037 7.29671 7.40731 7.53570 8.04243 8.11397 8.59311 9.16106 9.52070 10.03452 10.74020 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002211 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.735913 B =12663.281704 C =13103.063849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C 0.524 3.476 4 O -0.544 6.544 5 N -0.608 5.608 6 C 0.094 3.906 7 C 0.037 3.963 8 N -0.514 5.514 9 C 0.046 3.954 10 C 0.443 3.557 11 O -0.577 6.577 12 N -0.563 5.563 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.041 3.959 22 C 0.119 3.881 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.093 4.093 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.026 0.974 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -22.401 10.883 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.080 4.080 3 C 0.312 3.688 4 O -0.421 6.421 5 N -0.341 5.341 6 C -0.029 4.029 7 C -0.092 4.092 8 N -0.238 5.238 9 C -0.085 4.085 10 C 0.228 3.772 11 O -0.462 6.462 12 N -0.200 5.200 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.088 4.088 22 C -0.003 4.003 23 C -0.124 4.124 24 C -0.169 4.169 25 C -0.172 4.172 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.504 -21.495 11.960 25.007 hybrid contribution 0.924 0.208 -1.117 1.464 sum -3.580 -21.287 10.843 24.156 Atomic orbital electron populations 1.22326 0.92486 1.03514 1.03529 1.20791 0.97420 0.91814 0.97946 1.20528 0.80774 0.86957 0.80556 1.90676 1.33556 1.79136 1.38699 1.48186 1.48466 1.09725 1.27722 1.22487 0.93931 1.00685 0.85764 1.22546 1.00133 0.89052 0.97481 1.61521 1.46001 1.10845 1.05469 1.21854 0.99821 0.95756 0.91046 1.19711 0.84460 0.87900 0.85097 1.90483 1.53142 1.70940 1.31601 1.41874 1.59519 1.07063 1.11540 1.19693 1.43131 0.81011 0.98957 0.87881 1.25266 0.97107 1.00721 0.94871 1.69607 1.46134 1.36623 1.01936 0.85859 0.78745 0.82206 0.77493 1.20422 1.20936 1.19390 1.22646 0.91577 1.04111 0.90418 1.21757 1.01218 0.79734 0.97606 1.20737 1.01900 0.92990 0.96781 1.21954 1.01208 0.95604 0.98173 1.22064 1.01038 0.99527 0.94568 1.20524 1.01314 0.95561 0.95542 1.21434 1.00657 0.94684 0.96307 0.90460 0.90953 0.92004 0.90248 0.87617 0.89491 0.94683 0.89209 0.93474 0.77504 0.91866 0.95557 0.86704 0.90369 0.89016 0.89585 0.90307 0.87527 0.87884 0.90856 0.90526 0.91134 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 7.28 37.15 0.27 -0.97 16 2 C -0.08 -0.72 0.49 -155.45 -0.08 -0.80 16 3 C 0.52 6.83 6.47 -10.99 -0.07 6.76 16 4 O -0.54 -9.06 15.44 5.55 0.09 -8.97 16 5 N -0.61 -7.68 3.00 -172.47 -0.52 -8.19 16 6 C 0.09 0.95 4.34 -3.60 -0.02 0.93 16 7 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 8 N -0.51 -8.09 4.37 -235.76 -1.03 -9.12 16 9 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 10 C 0.44 10.12 7.44 -10.98 -0.08 10.04 16 11 O -0.58 -15.02 13.91 5.55 0.08 -14.95 16 12 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 13 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 14 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 17 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.04 0.66 5.26 -3.70 -0.02 0.64 16 22 C 0.12 1.76 6.61 -3.60 -0.02 1.73 16 23 C -0.09 -0.72 4.58 -28.18 -0.13 -0.85 16 24 C -0.15 -1.07 9.32 -35.90 -0.33 -1.40 16 25 C -0.15 -1.04 9.15 -35.90 -0.33 -1.37 16 26 C -0.09 -0.64 5.49 -28.18 -0.15 -0.80 16 27 C -0.09 -0.87 4.27 -26.51 -0.11 -0.98 16 28 H 0.08 0.57 4.23 -51.93 -0.22 0.35 16 29 H 0.07 0.48 5.98 -51.93 -0.31 0.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 32 H 0.11 0.81 2.56 -51.93 -0.13 0.68 16 33 H 0.09 0.84 7.99 -51.93 -0.41 0.43 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 1.36 7.97 -51.93 -0.41 0.94 16 36 H 0.05 0.75 8.13 -51.92 -0.42 0.33 16 37 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.12 2.25 5.77 -51.93 -0.30 1.95 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 43 H 0.09 0.62 5.27 -51.93 -0.27 0.34 16 44 H 0.08 0.74 8.10 -51.92 -0.42 0.32 16 45 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.08 0.48 7.08 -51.93 -0.37 0.11 16 49 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 50 H 0.07 0.74 8.02 -51.93 -0.42 0.33 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -32.13 377.20 -9.10 -41.23 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.68 Total: 9.77 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.37 Total: 6.26 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.88 Total: -54.91 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.16 Total: -23.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.13 -9.10 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112879769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.270 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds