Wall clock time and date at job start Tue Mar 31 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.63922 * 2 1 4 4 O 1.21286 * 120.00287 * 127.58639 * 3 2 1 5 5 N 1.34779 * 120.00177 * 307.57705 * 3 2 1 6 6 C 1.47076 * 120.87773 * 355.06560 * 5 3 2 7 7 C 1.53245 * 108.52084 * 231.15916 * 6 5 3 8 8 N 1.46895 * 109.33754 * 306.17083 * 7 6 5 9 9 C 1.46903 * 110.99982 * 187.25244 * 8 7 6 10 10 C 1.50699 * 109.47086 * 170.00148 * 9 8 7 11 11 O 1.21287 * 120.00374 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99601 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99635 * 179.72377 * 12 10 9 14 14 H 1.07996 * 120.00070 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99816 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00188 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46985 * 89.99606 * 17 15 13 19 19 H 1.48498 * 109.47324 * 209.99625 * 17 15 13 20 20 H 1.48504 * 109.47393 * 329.99701 * 17 15 13 21 21 C 1.46904 * 111.27005 * 63.10472 * 8 7 6 22 22 C 1.47080 * 120.88290 * 175.03793 * 5 3 2 23 23 C 1.53016 * 109.81692 * 239.46918 * 2 1 3 24 24 C 1.50069 * 110.14713 * 289.64654 * 23 2 1 25 25 C 1.29438 * 124.07740 * 342.87039 * 24 23 2 26 26 C 1.50066 * 124.07347 * 0.46983 * 25 24 23 27 27 C 1.53024 * 110.15052 * 342.86600 * 26 25 24 28 28 H 1.08994 * 109.47346 * 52.73971 * 1 2 3 29 29 H 1.09001 * 109.47510 * 172.74235 * 1 2 3 30 30 H 1.09000 * 109.47633 * 292.73900 * 1 2 3 31 31 H 1.09005 * 109.63263 * 111.44838 * 6 5 3 32 32 H 1.08996 * 109.62993 * 350.86484 * 6 5 3 33 33 H 1.08996 * 109.49287 * 186.20934 * 7 6 5 34 34 H 1.08997 * 109.51408 * 66.14114 * 7 6 5 35 35 H 1.08999 * 109.47248 * 49.99754 * 9 8 7 36 36 H 1.09007 * 109.47205 * 290.00056 * 9 8 7 37 37 H 0.96997 * 119.99943 * 359.97438 * 12 10 9 38 38 H 0.97000 * 120.00306 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.49021 * 56.85672 * 21 8 7 40 40 H 1.09006 * 109.49272 * 176.93541 * 21 8 7 41 41 H 1.08997 * 109.62834 * 248.54702 * 22 5 3 42 42 H 1.08992 * 109.63036 * 9.12897 * 22 5 3 43 43 H 1.08997 * 109.36267 * 49.85521 * 23 2 1 44 44 H 1.09008 * 109.35785 * 169.44295 * 23 2 1 45 45 H 1.08004 * 117.96168 * 162.89534 * 24 23 2 46 46 H 1.07995 * 117.96593 * 180.49003 * 25 24 23 47 47 H 1.09008 * 109.35768 * 222.66066 * 26 25 24 48 48 H 1.09000 * 109.35976 * 103.07612 * 26 25 24 49 49 H 1.09006 * 109.64052 * 289.75340 * 27 26 25 50 50 H 1.08995 * 109.82112 * 169.22801 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0364 1.4193 0.0000 4 8 2.8436 1.7752 0.8323 5 7 1.5925 2.2933 -0.9250 6 6 0.6978 1.8569 -2.0077 7 6 1.2814 2.3318 -3.3427 8 7 1.5218 3.7796 -3.2810 9 6 1.9190 4.3037 -4.5946 10 6 1.9180 5.8102 -4.5556 11 8 1.6156 6.3903 -3.5342 12 7 2.2521 6.5130 -5.6561 13 6 2.2457 7.8836 -5.6222 14 1 1.9725 8.4000 -4.7139 15 6 2.5896 8.6082 -6.7569 16 7 2.9214 7.9798 -7.8622 17 14 2.5802 10.4756 -6.7109 18 1 3.9181 10.9672 -6.2944 19 1 2.2576 11.0024 -8.0613 20 1 1.5573 10.9418 -5.7405 21 6 2.5224 4.1106 -2.2577 22 6 1.9896 3.7087 -0.8783 23 6 2.0487 -0.7313 -1.2400 24 6 1.7783 -2.2028 -1.1231 25 6 1.4897 -2.8012 -0.0122 26 6 1.3752 -2.1054 1.3125 27 6 2.0455 -0.7314 1.2459 28 1 -0.3634 0.6221 -0.8179 29 1 -0.3634 -1.0194 -0.1298 30 1 -0.3634 0.3972 0.9478 31 1 -0.2907 2.2935 -1.8643 32 1 0.6245 0.7694 -2.0063 33 1 0.5772 2.1138 -4.1456 34 1 2.2218 1.8148 -3.5334 35 1 1.2142 3.9594 -5.3515 36 1 2.9193 3.9473 -4.8407 37 1 2.4935 6.0492 -6.4730 38 1 3.1619 8.4856 -8.6542 39 1 3.4456 3.5688 -2.4631 40 1 2.7182 5.1828 -2.2737 41 1 1.1254 4.3232 -0.6263 42 1 2.7703 3.8454 -0.1301 43 1 1.5475 -0.3411 -2.1257 44 1 3.1224 -0.5676 -1.3332 45 1 1.8280 -2.7997 -2.0218 46 1 1.3211 -3.8675 -0.0403 47 1 1.8612 -2.7077 2.0801 48 1 0.3223 -1.9818 1.5659 49 1 3.1265 -0.8540 1.1777 50 1 1.7978 -0.1557 2.1376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112879769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:52 Heat of formation + Delta-G solvation = -51.968215 kcal Electronic energy + Delta-G solvation = -29989.503078 eV Core-core repulsion = 26016.628928 eV Total energy + Delta-G solvation = -3972.874150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.14136 -40.47843 -39.26903 -38.47321 -36.13820 -35.51602 -33.62817 -33.23356 -32.16549 -31.45127 -30.13989 -28.14998 -27.46781 -25.75477 -24.90885 -24.33185 -23.50140 -21.66867 -21.06401 -20.13001 -19.83319 -18.40633 -17.93331 -17.75120 -17.45316 -16.62237 -16.57653 -16.36306 -16.10873 -16.06975 -15.60814 -15.48243 -15.31597 -15.26521 -14.96199 -14.44512 -14.37921 -14.00767 -13.91678 -13.57627 -13.51780 -13.41197 -13.13910 -13.01677 -12.80594 -12.60511 -12.52838 -12.41280 -12.29535 -12.21439 -12.15493 -12.08935 -11.87727 -11.51897 -11.45442 -11.12560 -10.61021 -10.31125 -9.99760 -9.82470 -9.77789 -9.22709 -8.45919 -5.93929 1.37674 1.41676 1.44420 1.53860 1.54384 1.88238 2.06923 2.28550 2.72360 3.21155 3.29617 3.36576 3.58399 3.77678 3.80815 3.95575 4.04893 4.10749 4.14052 4.20856 4.28617 4.35875 4.36945 4.42718 4.49135 4.50617 4.55612 4.56967 4.62661 4.70636 4.73706 4.82446 4.87043 4.90577 4.96275 5.00277 5.06910 5.11808 5.19864 5.26948 5.36655 5.41957 5.43779 5.80558 5.81814 6.02537 6.09227 6.15127 6.39436 6.61851 7.07671 7.14373 7.58187 8.14011 8.71428 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002211 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.735913 B =12663.281704 C =13103.063849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 C 0.518 3.482 4 O -0.588 6.588 5 N -0.606 5.606 6 C 0.094 3.906 7 C 0.035 3.965 8 N -0.528 5.528 9 C 0.059 3.941 10 C 0.441 3.559 11 O -0.613 6.613 12 N -0.575 5.575 13 C -0.330 4.330 14 H 0.078 0.922 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.991 3.009 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.050 3.950 22 C 0.127 3.873 23 C -0.085 4.085 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.089 4.089 27 C -0.094 4.094 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.044 0.956 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.051 0.949 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -24.991 9.796 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.074 4.074 3 C 0.308 3.692 4 O -0.469 6.469 5 N -0.339 5.339 6 C -0.027 4.027 7 C -0.093 4.093 8 N -0.253 5.253 9 C -0.072 4.072 10 C 0.228 3.772 11 O -0.499 6.499 12 N -0.212 5.212 13 C -0.459 4.459 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.815 3.185 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.078 4.078 22 C 0.004 3.996 23 C -0.122 4.122 24 C -0.175 4.175 25 C -0.172 4.172 26 C -0.126 4.126 27 C -0.132 4.132 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.069 0.931 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.877 -24.125 10.846 27.096 hybrid contribution 1.361 0.983 -0.695 1.817 sum -4.516 -23.142 10.151 25.671 Atomic orbital electron populations 1.22331 0.90647 1.04872 1.03607 1.20821 0.98683 0.89101 0.98811 1.21302 0.79929 0.88316 0.79628 1.90652 1.35628 1.80144 1.40445 1.48253 1.48582 1.08575 1.28446 1.22747 0.93351 1.02514 0.84115 1.22743 1.01426 0.85967 0.99143 1.61485 1.45450 1.13966 1.04434 1.21742 1.01740 0.91060 0.92654 1.20795 0.82163 0.90482 0.83751 1.90468 1.54084 1.72591 1.32807 1.41940 1.60487 1.06450 1.12371 1.19627 1.45010 0.82608 0.98675 0.90376 1.26003 0.96282 1.04778 0.94271 1.69663 1.46130 1.38089 1.02270 0.84961 0.78654 0.77122 0.77812 1.19854 1.19539 1.19813 1.22386 0.92149 1.01652 0.91647 1.21462 1.00396 0.81416 0.96364 1.20727 1.01035 0.94061 0.96357 1.22010 1.01636 0.94733 0.99107 1.22220 1.00536 1.00417 0.94003 1.20526 1.01783 0.93901 0.96373 1.21413 0.99795 0.96220 0.95746 0.89729 0.88983 0.92534 0.89632 0.84551 0.86551 0.93807 0.86218 0.91857 0.77021 0.91364 0.95517 0.90624 0.91211 0.90395 0.88116 0.91924 0.85797 0.86069 0.90020 0.89284 0.93056 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.28 71.98 0.52 -1.48 16 2 C -0.07 -1.24 0.49 -52.79 -0.03 -1.27 16 3 C 0.52 13.48 6.47 87.66 0.57 14.04 16 4 O -0.59 -20.47 15.44 -3.05 -0.05 -20.52 16 5 N -0.61 -14.94 3.00 -817.95 -2.45 -17.40 16 6 C 0.09 1.64 4.34 86.35 0.38 2.01 16 7 C 0.04 0.69 5.62 86.39 0.49 1.18 16 8 N -0.53 -15.98 4.37 -899.81 -3.93 -19.91 16 9 C 0.06 1.93 5.45 85.56 0.47 2.39 16 10 C 0.44 20.42 7.44 87.66 0.65 21.08 16 11 O -0.61 -33.08 13.91 -3.05 -0.04 -33.13 16 12 N -0.57 -29.02 5.29 -306.98 -1.62 -30.64 16 13 C -0.33 -18.57 9.68 84.04 0.81 -17.75 16 14 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 16 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 17 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.05 1.69 5.26 86.38 0.45 2.14 16 22 C 0.13 3.89 6.61 86.35 0.57 4.46 16 23 C -0.09 -1.19 4.58 29.66 0.14 -1.05 16 24 C -0.16 -1.70 9.32 27.04 0.25 -1.44 16 25 C -0.15 -1.58 9.15 27.04 0.25 -1.33 16 26 C -0.09 -1.03 5.49 29.66 0.16 -0.87 16 27 C -0.09 -1.70 4.27 30.74 0.13 -1.57 16 28 H 0.08 0.95 4.23 -2.39 -0.01 0.94 16 29 H 0.09 0.85 5.98 -2.39 -0.01 0.84 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.47 7.87 -2.38 -0.02 1.45 16 32 H 0.14 1.56 2.56 -2.39 -0.01 1.55 16 33 H 0.12 1.70 7.99 -2.39 -0.02 1.68 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 3.24 7.97 -2.39 -0.02 3.22 16 36 H 0.06 1.90 8.13 -2.38 -0.02 1.88 16 37 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 38 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 3.14 5.77 -2.38 -0.01 3.13 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.58 7.04 -2.39 -0.02 2.56 16 43 H 0.10 1.05 5.27 -2.39 -0.01 1.04 16 44 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 45 H 0.12 0.96 8.06 -2.91 -0.02 0.93 16 46 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.09 0.84 7.08 -2.39 -0.02 0.82 16 49 H 0.05 1.11 8.12 -2.38 -0.02 1.09 16 50 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 Total: -1.00 -72.85 377.20 0.72 -72.13 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.23 Total: 33.26 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.28 Total: 20.27 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.72 Total: -117.03 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.09 Total: -53.65 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.85 0.72 -72.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112879769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.161 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds