Wall clock time and date at job start Tue Mar 31 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51266 * 120.84911 * 2 1 4 4 C 1.53235 * 108.69182 * 231.41619 * 3 2 1 5 5 C 1.52951 * 109.40735 * 305.28095 * 4 3 2 6 6 C 1.50701 * 109.41489 * 183.70745 * 5 4 3 7 7 O 1.21283 * 119.99752 * 334.85695 * 6 5 4 8 8 N 1.34775 * 120.00415 * 154.86084 * 6 5 4 9 9 C 1.47074 * 120.88176 * 184.71836 * 8 6 5 10 10 C 1.53691 * 108.27754 * 128.75325 * 9 8 6 11 11 N 1.46902 * 109.25995 * 54.08224 * 10 9 8 12 12 C 1.46903 * 110.99834 * 172.61019 * 11 10 9 13 13 C 1.50700 * 109.47019 * 294.29473 * 12 11 10 14 14 O 1.21294 * 119.99722 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00101 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00171 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00122 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99993 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99715 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99824 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47377 * 90.00169 * 20 18 16 22 22 H 1.48507 * 109.46823 * 209.99868 * 20 18 16 23 23 H 1.48503 * 109.47434 * 329.99630 * 20 18 16 24 24 C 1.46894 * 111.26429 * 296.75486 * 11 10 9 25 25 C 1.47087 * 120.88018 * 4.99094 * 8 6 5 26 26 C 1.52960 * 109.81885 * 63.59553 * 5 4 3 27 27 C 1.51661 * 121.09781 * 180.15552 * 2 1 3 28 28 H 1.08002 * 119.99464 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00023 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.62593 * 111.61030 * 3 2 1 31 31 H 1.08992 * 109.62880 * 351.22873 * 3 2 1 32 32 H 1.08995 * 109.47786 * 65.26006 * 4 3 2 33 33 H 1.09000 * 109.47843 * 185.28064 * 4 3 2 34 34 H 1.09000 * 109.41194 * 303.56181 * 5 4 3 35 35 H 1.09000 * 109.62564 * 248.51999 * 9 8 6 36 36 H 1.09001 * 109.63296 * 9.09437 * 9 8 6 37 37 H 1.09000 * 109.64825 * 294.07587 * 10 9 8 38 38 H 1.09005 * 109.42065 * 173.94595 * 10 9 8 39 39 H 1.08996 * 109.47211 * 54.30212 * 12 11 10 40 40 H 1.09002 * 109.46497 * 174.29812 * 12 11 10 41 41 H 0.97002 * 119.99877 * 0.02562 * 15 13 12 42 42 H 0.97004 * 119.99635 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49715 * 303.14386 * 24 11 10 44 44 H 1.09002 * 109.49392 * 183.06544 * 24 11 10 45 45 H 1.08999 * 109.62701 * 350.89726 * 25 8 6 46 46 H 1.08995 * 109.62637 * 111.48167 * 25 8 6 47 47 H 1.08994 * 109.48091 * 56.38350 * 26 5 4 48 48 H 1.09001 * 109.48003 * 176.40858 * 26 5 4 49 49 H 1.09005 * 109.55993 * 8.86926 * 27 2 1 50 50 H 1.09003 * 109.75368 * 248.45615 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1147 1.2561 -1.1347 5 6 3.9846 0.0069 -0.9853 6 6 5.0543 0.0115 -2.0468 7 8 4.8772 0.6154 -3.0835 8 7 6.2077 -0.6555 -1.8441 9 6 7.3050 -0.5801 -2.8205 10 6 8.5934 -0.2079 -2.0699 11 7 8.8056 -1.1587 -0.9704 12 6 10.1137 -0.9470 -0.3364 13 6 11.2075 -1.2751 -1.3198 14 8 10.9250 -1.6481 -2.4388 15 7 12.4995 -1.1541 -0.9558 16 6 13.4945 -1.4521 -1.8506 17 1 13.2431 -1.7834 -2.8473 18 6 14.8266 -1.3278 -1.4751 19 7 15.1325 -0.9242 -0.2625 20 14 16.1824 -1.7332 -2.6945 21 1 16.5421 -0.5119 -3.4589 22 1 17.3756 -2.2278 -1.9617 23 1 15.7074 -2.7821 -3.6323 24 6 7.7223 -1.0798 0.0186 25 6 6.4004 -1.4829 -0.6433 26 6 3.1220 -1.2470 -1.1381 27 6 2.0934 -1.2986 -0.0035 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.5981 1.4191 0.9545 31 1 1.4024 2.1332 -0.1565 32 1 2.5974 1.2262 -2.0935 33 1 3.7437 2.1451 -1.0885 34 1 4.4515 0.0063 -0.0004 35 1 7.4281 -1.5471 -3.3083 36 1 7.0803 0.1830 -3.5657 37 1 8.5042 0.8007 -1.6665 38 1 9.4387 -0.2519 -2.7569 39 1 10.2034 0.0943 -0.0272 40 1 10.2035 -1.5941 0.5362 41 1 12.7253 -0.8562 -0.0607 42 1 16.0625 -0.8378 -0.0003 43 1 7.6452 -0.0590 0.3930 44 1 7.9356 -1.7560 0.8465 45 1 5.5772 -1.3169 0.0516 46 1 6.4382 -2.5349 -0.9259 47 1 2.6045 -1.2176 -2.0969 48 1 3.7565 -2.1322 -1.0944 49 1 1.4128 -2.1349 -0.1642 50 1 2.6062 -1.4221 0.9504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113305091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:02 Heat of formation + Delta-G solvation = -53.238117 kcal Electronic energy + Delta-G solvation = -29294.723257 eV Core-core repulsion = 25321.794039 eV Total energy + Delta-G solvation = -3972.929218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.68074 -38.98565 -38.07803 -37.17227 -34.56330 -33.78324 -33.19887 -31.46529 -31.28493 -30.99545 -28.95926 -27.08516 -25.62294 -23.92318 -23.78732 -23.30219 -22.23334 -20.70441 -19.31349 -18.97522 -18.67264 -17.90381 -17.30213 -16.22828 -15.95256 -15.54888 -15.21458 -15.14981 -14.84795 -14.79206 -14.58483 -14.21572 -14.15635 -13.90884 -13.75675 -13.64008 -13.54171 -13.10475 -12.71608 -12.66476 -12.41295 -12.05902 -11.94727 -11.79526 -11.55369 -11.50613 -11.41694 -11.37774 -11.15293 -11.01262 -10.89427 -10.83416 -10.53594 -10.40594 -10.24009 -9.74377 -9.49763 -9.34573 -8.85854 -8.39155 -8.01292 -7.91933 -6.44197 -3.84964 1.90401 2.54109 2.89547 3.16294 3.25361 3.31112 3.85568 3.90177 4.20125 4.20892 4.24697 4.38522 4.62964 4.74413 4.76440 4.87402 4.92004 4.96200 5.04811 5.06364 5.12420 5.19986 5.22696 5.29650 5.35314 5.40072 5.43543 5.50467 5.55615 5.60248 5.67058 5.71804 5.75888 5.77570 5.81241 5.83114 5.88224 5.99176 6.13636 6.21685 6.22696 6.29660 6.52220 6.52935 7.11808 7.28450 7.39171 7.53092 8.03698 8.10758 8.58699 9.15574 9.51465 10.02833 10.73437 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034789 B = 0.001992 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.660691 B =14055.862721 C =14324.163121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.097 4.097 5 C -0.106 4.106 6 C 0.518 3.482 7 O -0.544 6.544 8 N -0.611 5.611 9 C 0.120 3.880 10 C 0.041 3.959 11 N -0.514 5.514 12 C 0.047 3.953 13 C 0.442 3.558 14 O -0.578 6.578 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.038 3.962 25 C 0.111 3.889 26 C -0.106 4.106 27 C -0.084 4.084 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.898 1.679 6.431 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.119 4.119 3 C -0.124 4.124 4 C -0.135 4.135 5 C -0.127 4.127 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.345 5.345 9 C -0.002 4.002 10 C -0.088 4.088 11 N -0.239 5.239 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.462 6.462 15 N -0.199 5.199 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.091 4.091 25 C -0.012 4.012 26 C -0.143 4.143 27 C -0.121 4.121 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.973 1.306 4.998 25.502 hybrid contribution 1.048 0.753 0.584 1.417 sum -23.925 2.059 5.582 24.653 Atomic orbital electron populations 1.23620 0.94963 1.01839 1.03062 1.22049 0.95060 0.95805 0.99023 1.20839 0.97586 0.94909 0.99018 1.21370 0.96609 0.96185 0.99302 1.21338 0.94992 0.97842 0.98567 1.20631 0.82487 0.78169 0.88144 1.90680 1.79116 1.44259 1.28084 1.48291 1.15265 1.47831 1.23101 1.21837 0.84200 1.03125 0.91057 1.22739 0.99172 0.91996 0.94858 1.61511 1.00502 1.52186 1.09722 1.21849 0.89137 1.00109 0.97343 1.19710 0.83385 0.85062 0.89057 1.90487 1.82428 1.51436 1.21832 1.41868 1.04095 1.58814 1.15171 1.19700 0.84785 1.41956 0.96404 0.87869 1.25267 0.98490 0.97259 0.96925 1.69611 1.19681 1.46957 1.18027 0.85856 0.79762 0.78858 0.79809 1.20427 1.20928 1.19391 1.22507 0.91415 1.00217 0.94937 1.21924 0.97083 0.95691 0.86522 1.21506 0.96984 0.96143 0.99716 1.20870 0.97390 0.94987 0.98824 0.88473 0.88490 0.90829 0.90981 0.90637 0.91316 0.88918 0.90377 0.89073 0.95540 0.86689 0.93467 0.89202 0.77502 0.91865 0.94704 0.89479 0.89430 0.90207 0.90972 0.90963 0.90888 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 14.00 29.01 0.41 -0.90 16 2 C -0.12 -0.84 5.38 -100.32 -0.54 -1.38 16 3 C -0.09 -0.60 6.02 -27.48 -0.17 -0.77 16 4 C -0.10 -0.87 4.68 -26.64 -0.12 -0.99 16 5 C -0.11 -0.95 1.57 -91.82 -0.14 -1.09 16 6 C 0.52 6.60 6.80 -10.99 -0.07 6.52 16 7 O -0.54 -8.96 15.64 5.55 0.09 -8.88 16 8 N -0.61 -7.64 3.00 -172.18 -0.52 -8.16 16 9 C 0.12 1.76 6.61 -3.37 -0.02 1.74 16 10 C 0.04 0.66 5.27 -3.46 -0.02 0.64 16 11 N -0.51 -8.07 4.37 -235.47 -1.03 -9.10 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 C 0.44 10.09 7.44 -10.99 -0.08 10.01 16 14 O -0.58 -15.01 13.91 5.55 0.08 -14.93 16 15 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16 16 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 25 C 0.11 1.09 5.95 -3.60 -0.02 1.07 16 26 C -0.11 -0.81 5.01 -26.63 -0.13 -0.95 16 27 C -0.08 -0.52 6.04 -27.29 -0.16 -0.69 16 28 H 0.10 0.58 7.92 -52.49 -0.42 0.16 16 29 H 0.10 0.56 7.93 -52.49 -0.42 0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.07 0.79 7.99 -51.93 -0.41 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.69 6.45 -51.93 -0.34 0.35 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.39 7.09 -51.93 -0.37 1.02 16 37 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 2.24 5.76 -51.93 -0.30 1.94 16 39 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.09 1.35 7.97 -51.93 -0.41 0.94 16 41 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.84 7.99 -51.93 -0.41 0.42 16 45 H 0.09 0.61 5.25 -51.93 -0.27 0.33 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.51 7.43 -51.93 -0.39 0.13 16 49 H 0.07 0.41 7.91 -51.93 -0.41 0.00 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -32.20 391.39 -9.41 -41.61 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.19 Total: 8.65 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.37 Total: 6.55 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.88 Total: -54.73 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.16 Total: -23.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.20 -9.41 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113305091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds