Wall clock time and date at job start Tue Mar 31 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51266 * 120.84911 * 2 1 4 4 C 1.53235 * 108.69182 * 231.41619 * 3 2 1 5 5 C 1.52951 * 109.40735 * 305.28095 * 4 3 2 6 6 C 1.50701 * 109.41489 * 183.70745 * 5 4 3 7 7 O 1.21283 * 119.99752 * 334.85695 * 6 5 4 8 8 N 1.34775 * 120.00415 * 154.86084 * 6 5 4 9 9 C 1.47074 * 120.88176 * 184.71836 * 8 6 5 10 10 C 1.53691 * 108.27754 * 128.75325 * 9 8 6 11 11 N 1.46902 * 109.25995 * 54.08224 * 10 9 8 12 12 C 1.46903 * 110.99834 * 172.61019 * 11 10 9 13 13 C 1.50700 * 109.47019 * 294.29473 * 12 11 10 14 14 O 1.21294 * 119.99722 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00101 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00171 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00122 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99993 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99715 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99824 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47377 * 90.00169 * 20 18 16 22 22 H 1.48507 * 109.46823 * 209.99868 * 20 18 16 23 23 H 1.48503 * 109.47434 * 329.99630 * 20 18 16 24 24 C 1.46894 * 111.26429 * 296.75486 * 11 10 9 25 25 C 1.47087 * 120.88018 * 4.99094 * 8 6 5 26 26 C 1.52960 * 109.81885 * 63.59553 * 5 4 3 27 27 C 1.51661 * 121.09781 * 180.15552 * 2 1 3 28 28 H 1.08002 * 119.99464 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00023 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.62593 * 111.61030 * 3 2 1 31 31 H 1.08992 * 109.62880 * 351.22873 * 3 2 1 32 32 H 1.08995 * 109.47786 * 65.26006 * 4 3 2 33 33 H 1.09000 * 109.47843 * 185.28064 * 4 3 2 34 34 H 1.09000 * 109.41194 * 303.56181 * 5 4 3 35 35 H 1.09000 * 109.62564 * 248.51999 * 9 8 6 36 36 H 1.09001 * 109.63296 * 9.09437 * 9 8 6 37 37 H 1.09000 * 109.64825 * 294.07587 * 10 9 8 38 38 H 1.09005 * 109.42065 * 173.94595 * 10 9 8 39 39 H 1.08996 * 109.47211 * 54.30212 * 12 11 10 40 40 H 1.09002 * 109.46497 * 174.29812 * 12 11 10 41 41 H 0.97002 * 119.99877 * 0.02562 * 15 13 12 42 42 H 0.97004 * 119.99635 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49715 * 303.14386 * 24 11 10 44 44 H 1.09002 * 109.49392 * 183.06544 * 24 11 10 45 45 H 1.08999 * 109.62701 * 350.89726 * 25 8 6 46 46 H 1.08995 * 109.62637 * 111.48167 * 25 8 6 47 47 H 1.08994 * 109.48091 * 56.38350 * 26 5 4 48 48 H 1.09001 * 109.48003 * 176.40858 * 26 5 4 49 49 H 1.09005 * 109.55993 * 8.86926 * 27 2 1 50 50 H 1.09003 * 109.75368 * 248.45615 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1147 1.2561 -1.1347 5 6 3.9846 0.0069 -0.9853 6 6 5.0543 0.0115 -2.0468 7 8 4.8772 0.6154 -3.0835 8 7 6.2077 -0.6555 -1.8441 9 6 7.3050 -0.5801 -2.8205 10 6 8.5934 -0.2079 -2.0699 11 7 8.8056 -1.1587 -0.9704 12 6 10.1137 -0.9470 -0.3364 13 6 11.2075 -1.2751 -1.3198 14 8 10.9250 -1.6481 -2.4388 15 7 12.4995 -1.1541 -0.9558 16 6 13.4945 -1.4521 -1.8506 17 1 13.2431 -1.7834 -2.8473 18 6 14.8266 -1.3278 -1.4751 19 7 15.1325 -0.9242 -0.2625 20 14 16.1824 -1.7332 -2.6945 21 1 16.5421 -0.5119 -3.4589 22 1 17.3756 -2.2278 -1.9617 23 1 15.7074 -2.7821 -3.6323 24 6 7.7223 -1.0798 0.0186 25 6 6.4004 -1.4829 -0.6433 26 6 3.1220 -1.2470 -1.1381 27 6 2.0934 -1.2986 -0.0035 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.5981 1.4191 0.9545 31 1 1.4024 2.1332 -0.1565 32 1 2.5974 1.2262 -2.0935 33 1 3.7437 2.1451 -1.0885 34 1 4.4515 0.0063 -0.0004 35 1 7.4281 -1.5471 -3.3083 36 1 7.0803 0.1830 -3.5657 37 1 8.5042 0.8007 -1.6665 38 1 9.4387 -0.2519 -2.7569 39 1 10.2034 0.0943 -0.0272 40 1 10.2035 -1.5941 0.5362 41 1 12.7253 -0.8562 -0.0607 42 1 16.0625 -0.8378 -0.0003 43 1 7.6452 -0.0590 0.3930 44 1 7.9356 -1.7560 0.8465 45 1 5.5772 -1.3169 0.0516 46 1 6.4382 -2.5349 -0.9259 47 1 2.6045 -1.2176 -2.0969 48 1 3.7565 -2.1322 -1.0944 49 1 1.4128 -2.1349 -0.1642 50 1 2.6062 -1.4221 0.9504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113305091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:01 Heat of formation + Delta-G solvation = -74.830846 kcal Electronic energy + Delta-G solvation = -29295.659588 eV Core-core repulsion = 25321.794039 eV Total energy + Delta-G solvation = -3973.865548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.64839 -40.40550 -39.13089 -38.34992 -36.08241 -35.41194 -33.89526 -33.25863 -32.14301 -31.92545 -30.22420 -27.95669 -27.08307 -25.45191 -24.80517 -23.89558 -23.10898 -21.65893 -21.03383 -19.97935 -19.82060 -19.28696 -18.27457 -17.75260 -17.10417 -16.60186 -16.51106 -16.35815 -16.08757 -15.72086 -15.58577 -15.40979 -15.37573 -15.28496 -14.97852 -14.51769 -14.41180 -14.11757 -13.84545 -13.63862 -13.49006 -13.28618 -13.13649 -12.95348 -12.81012 -12.55642 -12.47329 -12.40690 -12.32067 -12.22662 -12.15580 -12.07837 -11.94584 -11.51967 -11.45036 -11.10617 -10.72544 -10.31918 -9.99511 -9.86275 -9.77408 -9.21573 -8.45886 -5.93863 1.37771 1.41114 1.41851 1.54086 1.55591 1.91186 2.07175 2.28759 2.73590 3.21254 3.36319 3.42066 3.65664 3.73518 3.87792 3.98127 4.07781 4.10711 4.17086 4.18381 4.24709 4.32846 4.38381 4.44787 4.48845 4.50507 4.56727 4.58182 4.61481 4.74939 4.79768 4.83219 4.85575 4.89176 5.04404 5.05195 5.06970 5.13790 5.19565 5.21912 5.33288 5.42057 5.42683 5.81266 5.81520 6.03214 6.03538 6.16489 6.41678 6.62014 7.10814 7.14535 7.58397 8.14312 8.71417 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034789 B = 0.001992 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.660691 B =14055.862721 C =14324.163121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.081 4.081 4 C -0.095 4.095 5 C -0.097 4.097 6 C 0.513 3.487 7 O -0.590 6.590 8 N -0.611 5.611 9 C 0.128 3.872 10 C 0.051 3.949 11 N -0.531 5.531 12 C 0.060 3.940 13 C 0.440 3.560 14 O -0.614 6.614 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.037 3.963 25 C 0.110 3.890 26 C -0.102 4.102 27 C -0.078 4.078 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.045 0.955 44 H 0.115 0.885 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.126 1.068 9.135 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.303 3.697 7 O -0.471 6.471 8 N -0.343 5.343 9 C 0.005 3.995 10 C -0.078 4.078 11 N -0.256 5.256 12 C -0.071 4.071 13 C 0.227 3.773 14 O -0.500 6.500 15 N -0.212 5.212 16 C -0.460 4.460 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.815 3.185 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.091 4.091 25 C -0.012 4.012 26 C -0.140 4.140 27 C -0.115 4.115 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.133 0.867 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.219 0.687 7.751 27.349 hybrid contribution 1.345 0.954 -0.294 1.676 sum -24.874 1.642 7.457 26.019 Atomic orbital electron populations 1.23778 0.95070 1.02433 1.02458 1.22181 0.95351 0.96133 0.99566 1.20805 0.97090 0.95262 0.98622 1.21325 0.96881 0.95957 0.99151 1.21379 0.93850 0.98447 0.98081 1.21404 0.82911 0.76999 0.88360 1.90661 1.79985 1.46159 1.30247 1.48375 1.14471 1.48046 1.23421 1.21520 0.84721 1.01930 0.91363 1.22472 0.98128 0.92504 0.94715 1.61472 1.01200 1.52088 1.10860 1.21729 0.87675 1.01625 0.96074 1.20819 0.83949 0.82962 0.89543 1.90471 1.83114 1.52503 1.23933 1.41933 1.04566 1.59674 1.15022 1.19635 0.86308 1.43810 0.96265 0.90388 1.25996 0.99948 0.96696 0.98629 1.69666 1.20425 1.47029 1.18984 0.84961 0.77265 0.78551 0.77764 1.19854 1.19531 1.19860 1.22701 0.90154 1.01685 0.94564 1.22191 0.97792 0.95289 0.85913 1.21491 0.97202 0.95704 0.99566 1.20878 0.97034 0.94779 0.98858 0.88221 0.87730 0.89333 0.90752 0.92996 0.92247 0.86153 0.91551 0.90454 0.95252 0.90749 0.91786 0.86276 0.77012 0.91365 0.93685 0.86698 0.85471 0.89889 0.92992 0.89841 0.90085 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 14.00 67.78 0.95 -1.27 16 2 C -0.13 -1.53 5.38 -16.00 -0.09 -1.62 16 3 C -0.08 -0.95 6.02 30.11 0.18 -0.77 16 4 C -0.10 -1.61 4.68 30.66 0.14 -1.47 16 5 C -0.10 -1.51 1.57 -11.57 -0.02 -1.53 16 6 C 0.51 12.69 6.80 87.66 0.60 13.29 16 7 O -0.59 -20.04 15.64 -3.04 -0.05 -20.08 16 8 N -0.61 -14.51 3.00 -817.06 -2.45 -16.97 16 9 C 0.13 3.87 6.61 86.50 0.57 4.44 16 10 C 0.05 1.66 5.27 86.54 0.46 2.12 16 11 N -0.53 -15.85 4.37 -898.88 -3.93 -19.78 16 12 C 0.06 1.93 5.45 85.56 0.47 2.40 16 13 C 0.44 20.31 7.44 87.66 0.65 20.96 16 14 O -0.61 -33.08 13.91 -3.07 -0.04 -33.12 16 15 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 16 C -0.33 -18.59 9.68 84.04 0.81 -17.77 16 17 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 19 N -0.92 -49.18 13.05 21.67 0.28 -48.89 16 20 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.04 0.70 5.62 86.38 0.49 1.18 16 25 C 0.11 1.78 5.95 86.35 0.51 2.30 16 26 C -0.10 -1.31 5.01 30.66 0.15 -1.16 16 27 C -0.08 -0.72 6.04 30.23 0.18 -0.53 16 28 H 0.10 1.01 7.92 -2.91 -0.02 0.99 16 29 H 0.10 0.97 7.93 -2.91 -0.02 0.95 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.84 7.89 -2.39 -0.02 0.82 16 32 H 0.05 1.11 7.99 -2.39 -0.02 1.09 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.23 6.45 -2.39 -0.02 1.22 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.52 7.09 -2.39 -0.02 2.51 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 3.07 5.76 -2.38 -0.01 3.05 16 39 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 40 H 0.12 3.19 7.97 -2.39 -0.02 3.18 16 41 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 42 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.11 1.61 7.99 -2.39 -0.02 1.59 16 45 H 0.13 1.08 5.25 -2.39 -0.01 1.07 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.90 7.43 -2.39 -0.02 0.89 16 49 H 0.08 0.65 7.91 -2.38 -0.02 0.63 16 50 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -73.31 391.39 0.95 -72.36 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.21 Total: 31.73 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 6.53 Total: 20.35 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -7.72 Total: -116.15 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.09 Total: -53.21 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -73.31 0.95 -72.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113305091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.472 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds