Wall clock time and date at job start Tue Mar 31 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.90667 * 2 1 4 4 C 1.53781 * 113.61573 * 228.74795 * 2 1 3 5 5 C 1.53774 * 87.08113 * 270.88228 * 4 2 1 6 6 C 1.53775 * 87.08358 * 334.56887 * 5 4 2 7 7 H 1.09007 * 113.61278 * 270.88672 * 6 5 4 8 8 C 1.50702 * 113.61657 * 140.06494 * 6 5 4 9 9 O 1.21281 * 119.99976 * 224.70285 * 8 6 5 10 10 N 1.34776 * 119.99842 * 44.70263 * 8 6 5 11 11 C 1.46503 * 119.99906 * 179.97438 * 10 8 6 12 12 H 1.08998 * 115.51433 * 9.42194 * 11 10 8 13 13 C 1.52999 * 117.44183 * 223.99556 * 11 10 8 14 14 H 1.08997 * 119.52948 * 4.09719 * 13 11 10 15 15 C 1.54429 * 118.09336 * 160.62171 * 13 11 10 16 16 N 1.48562 * 104.53509 * 87.33322 * 15 13 11 17 17 C 1.46900 * 110.99828 * 200.94472 * 16 15 13 18 18 C 1.50696 * 109.47241 * 285.41773 * 17 16 15 19 19 O 1.21294 * 120.00069 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00001 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00069 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00078 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99878 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47029 * 59.99884 * 25 23 21 27 27 H 1.48501 * 109.47013 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47027 * 299.99717 * 25 23 21 29 29 C 1.48558 * 104.22317 * 320.50006 * 16 15 13 30 30 C 1.52995 * 117.44067 * 154.84063 * 11 10 8 31 31 H 1.09001 * 119.53048 * 354.34727 * 30 11 10 32 32 H 1.08994 * 109.47293 * 295.82196 * 1 2 3 33 33 H 1.09002 * 109.47184 * 55.83314 * 1 2 3 34 34 H 1.09005 * 109.46651 * 175.82623 * 1 2 3 35 35 H 1.09001 * 109.47446 * 191.25009 * 3 2 1 36 36 H 1.09002 * 109.47031 * 311.24867 * 3 2 1 37 37 H 1.08996 * 109.46983 * 71.25035 * 3 2 1 38 38 H 1.09002 * 113.61150 * 156.32988 * 4 2 1 39 39 H 1.09005 * 113.61538 * 25.43557 * 4 2 1 40 40 H 1.09000 * 113.61415 * 220.01657 * 5 4 2 41 41 H 1.09000 * 113.69037 * 89.13420 * 5 4 2 42 42 H 0.97002 * 119.99963 * 0.02562 * 10 8 6 43 43 H 1.09003 * 110.45012 * 328.56625 * 15 13 11 44 44 H 1.09004 * 110.42619 * 206.08292 * 15 13 11 45 45 H 1.09006 * 109.47412 * 45.41783 * 17 16 15 46 46 H 1.09004 * 109.47191 * 165.41560 * 17 16 15 47 47 H 0.97006 * 120.00195 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99815 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.41393 * 280.71039 * 29 16 15 50 50 H 1.08996 * 110.41120 * 158.26468 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 6 2.0930 -2.0425 0.0000 6 6 2.1460 -0.9291 1.0593 7 1 3.1591 -0.6498 1.3489 8 6 1.2468 -1.1783 2.2427 9 8 0.5574 -0.2814 2.6800 10 7 1.2086 -2.3979 2.8149 11 6 0.3348 -2.6401 3.9657 12 1 -0.3667 -1.8393 4.1992 13 6 0.9163 -3.4326 5.1381 14 1 1.9644 -3.7314 5.1174 15 6 0.2181 -3.3181 6.5108 16 7 -0.8376 -4.3628 6.4804 17 6 -1.8898 -4.0768 7.4648 18 6 -1.3804 -4.3864 8.8489 19 8 -0.2517 -4.8038 9.0004 20 7 -2.1786 -4.1985 9.9184 21 6 -1.7150 -4.4797 11.1776 22 1 -0.7103 -4.8521 11.3125 23 6 -2.5382 -4.2865 12.2803 24 7 -3.7609 -3.8338 12.1162 25 14 -1.9067 -4.6703 13.9960 26 1 -0.7168 -3.8301 14.2849 27 1 -2.9706 -4.3817 14.9910 28 1 -1.5310 -6.1047 14.0757 29 6 -1.3728 -4.3008 5.0959 30 6 -0.1297 -4.0775 4.2081 31 1 0.1177 -4.8518 3.4818 32 1 -0.3633 0.4476 0.9250 33 1 -0.3634 0.5771 -0.8503 34 1 -0.3633 -1.0250 -0.0748 35 1 3.1954 1.3518 -0.2005 36 1 1.6428 2.0077 -0.7727 37 1 1.9627 1.8725 0.9731 38 1 3.1591 -0.6498 -1.3490 39 1 1.4946 -1.1086 -1.9146 40 1 2.9718 -2.6874 0.0000 41 1 1.1576 -2.6019 0.0009 42 1 1.7602 -3.1152 2.4654 43 1 -0.2276 -2.3305 6.6302 44 1 0.9261 -3.5165 7.3155 45 1 -2.1657 -3.0239 7.4063 46 1 -2.7632 -4.6935 7.2527 47 1 -3.0810 -3.8636 9.7974 48 1 -4.3356 -3.6993 12.8859 49 1 -2.0675 -3.4670 4.9939 50 1 -1.8627 -5.2389 4.8353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114711792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:16 Heat of formation + Delta-G solvation = -14.816975 kcal Electronic energy + Delta-G solvation = -28591.981244 eV Core-core repulsion = 24620.718093 eV Total energy + Delta-G solvation = -3971.263152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.18199 -40.03794 -38.32030 -37.75186 -35.15811 -33.85178 -32.71247 -31.18666 -30.92056 -28.32457 -27.96128 -27.75091 -26.90443 -24.62572 -23.04032 -22.58311 -21.01752 -20.90728 -20.28035 -19.09879 -18.75892 -17.81928 -17.34286 -16.98721 -15.90811 -15.80519 -15.31932 -15.01768 -14.96064 -14.55768 -14.48934 -14.21667 -13.74860 -13.63517 -13.49602 -13.46638 -13.25105 -12.84602 -12.60651 -12.49880 -12.26590 -12.06437 -12.00257 -11.90751 -11.74972 -11.46800 -11.40554 -11.28842 -11.19834 -10.99728 -10.81529 -10.74258 -10.53854 -10.42003 -10.18898 -10.09346 -9.77190 -9.45554 -8.91248 -8.48396 -7.99636 -7.91690 -6.38337 -3.79033 2.33728 2.72356 3.22387 3.27722 3.32153 3.59300 3.92847 3.93873 4.01405 4.04404 4.20596 4.25222 4.27864 4.57356 4.60129 4.67477 4.81636 4.83688 5.01930 5.04795 5.14170 5.21115 5.22539 5.27767 5.28919 5.34092 5.39025 5.43883 5.53593 5.54878 5.63077 5.66290 5.70670 5.75274 5.79757 5.83503 5.86248 6.00974 6.02553 6.02728 6.14714 6.30189 6.31186 6.39973 7.06765 7.20650 7.22407 7.58064 7.98116 8.09371 8.65619 9.21561 9.58157 10.10391 10.79467 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.001799 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.759738 B =15556.469775 C =15759.133719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.136 4.136 6 C -0.128 4.128 7 H 0.120 0.880 8 C 0.529 3.471 9 O -0.532 6.532 10 N -0.699 5.699 11 C 0.104 3.896 12 H 0.133 0.867 13 C -0.162 4.162 14 H 0.118 0.882 15 C 0.069 3.931 16 N -0.483 5.483 17 C 0.034 3.966 18 C 0.446 3.554 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.060 3.940 30 C -0.168 4.168 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.402 0.598 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.045 0.955 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.859 5.605 -27.830 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.194 4.194 4 C -0.171 4.171 5 C -0.173 4.173 6 C -0.149 4.149 7 H 0.138 0.862 8 C 0.316 3.684 9 O -0.407 6.407 10 N -0.348 5.348 11 C -0.003 4.003 12 H 0.150 0.850 13 C -0.182 4.182 14 H 0.135 0.865 15 C -0.059 4.059 16 N -0.207 5.207 17 C -0.098 4.098 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.068 4.068 30 C -0.188 4.188 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.236 0.764 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.164 5.493 -27.116 29.145 hybrid contribution -0.356 0.289 0.559 0.723 sum 8.807 5.782 -26.558 28.571 Atomic orbital electron populations 1.21768 0.92566 1.01825 1.03366 1.21659 0.96224 0.94386 0.93700 1.21742 1.00013 0.95229 1.02465 1.23030 1.01400 0.95833 0.96789 1.22924 1.02934 0.96125 0.95333 1.22953 1.00168 0.99590 0.92233 0.86212 1.20503 0.82671 0.81769 0.83477 1.90678 1.43203 1.43322 1.63530 1.45361 1.44658 1.13009 1.31772 1.21804 0.96040 0.95098 0.87343 0.84980 1.23989 0.98810 1.04274 0.91157 0.86453 1.22667 0.95008 0.92889 0.95317 1.65289 1.09286 1.44831 1.01256 1.22064 0.94736 1.00008 0.92993 1.19681 0.87107 0.84932 0.85191 1.90508 1.19694 1.50055 1.85801 1.41851 1.14923 1.58026 1.05469 1.19643 1.00401 1.40945 0.81791 0.87997 1.25256 0.95304 0.97273 1.00162 1.69604 1.07035 1.45781 1.32001 0.85920 0.78120 0.79081 0.81098 1.19945 1.21008 1.19924 1.22658 0.94333 1.01378 0.88407 1.23790 0.97584 0.95715 1.01687 0.86404 0.90006 0.92465 0.92985 0.92602 0.92359 0.91880 0.89704 0.90894 0.90528 0.89511 0.76408 0.93916 0.87925 0.93020 0.89173 0.77514 0.91866 0.93654 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.01 37.16 0.30 -0.85 16 2 C -0.06 -0.42 1.19 -153.70 -0.18 -0.60 16 3 C -0.14 -0.93 9.19 37.16 0.34 -0.59 16 4 C -0.13 -0.68 7.22 -25.92 -0.19 -0.87 16 5 C -0.14 -0.68 6.71 -25.93 -0.17 -0.85 16 6 C -0.13 -0.90 3.70 -90.96 -0.34 -1.24 16 7 H 0.12 0.73 8.10 -51.92 -0.42 0.31 16 8 C 0.53 5.40 6.55 -10.98 -0.07 5.32 16 9 O -0.53 -7.51 14.16 5.56 0.08 -7.43 16 10 N -0.70 -6.25 5.46 -53.81 -0.29 -6.55 16 11 C 0.10 1.16 5.98 -67.93 -0.41 0.75 16 12 H 0.13 1.75 7.40 -51.93 -0.38 1.36 16 13 C -0.16 -2.03 7.04 -89.29 -0.63 -2.66 16 14 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.07 1.11 5.73 -2.15 -0.01 1.10 16 16 N -0.48 -8.17 4.98 -231.37 -1.15 -9.32 16 17 C 0.03 0.61 5.32 -4.98 -0.03 0.59 16 18 C 0.45 10.70 7.63 -10.99 -0.08 10.62 16 19 O -0.58 -15.80 14.80 5.54 0.08 -15.72 16 20 N -0.57 -14.55 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 25 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.06 0.78 6.26 -2.18 -0.01 0.76 16 30 C -0.17 -1.85 7.04 -89.31 -0.63 -2.48 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.89 6.18 -51.93 -0.32 0.57 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.42 7.31 -51.93 -0.38 0.05 16 35 H 0.05 0.31 7.94 -51.93 -0.41 -0.10 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.36 7.96 -51.93 -0.41 -0.06 16 39 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.46 7.56 -51.93 -0.39 0.07 16 42 H 0.40 2.54 8.37 -40.82 -0.34 2.20 16 43 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 44 H 0.10 1.94 7.24 -51.93 -0.38 1.57 16 45 H 0.05 0.87 7.77 -51.93 -0.40 0.46 16 46 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -33.20 399.46 -10.27 -43.47 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.29 Total: 11.02 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.35 Total: 0.94 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.78 Total: -54.58 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.16 Total: -23.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.20 -10.27 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114711792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.652 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds