Wall clock time and date at job start Tue Mar 31 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.90667 * 2 1 4 4 C 1.53781 * 113.61573 * 228.74795 * 2 1 3 5 5 C 1.53774 * 87.08113 * 270.88228 * 4 2 1 6 6 C 1.53775 * 87.08358 * 334.56887 * 5 4 2 7 7 H 1.09007 * 113.61278 * 270.88672 * 6 5 4 8 8 C 1.50702 * 113.61657 * 140.06494 * 6 5 4 9 9 O 1.21281 * 119.99976 * 224.70285 * 8 6 5 10 10 N 1.34776 * 119.99842 * 44.70263 * 8 6 5 11 11 C 1.46503 * 119.99906 * 179.97438 * 10 8 6 12 12 H 1.08998 * 115.51433 * 9.42194 * 11 10 8 13 13 C 1.52999 * 117.44183 * 223.99556 * 11 10 8 14 14 H 1.08997 * 119.52948 * 4.09719 * 13 11 10 15 15 C 1.54429 * 118.09336 * 160.62171 * 13 11 10 16 16 N 1.48562 * 104.53509 * 87.33322 * 15 13 11 17 17 C 1.46900 * 110.99828 * 200.94472 * 16 15 13 18 18 C 1.50696 * 109.47241 * 285.41773 * 17 16 15 19 19 O 1.21294 * 120.00069 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00001 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00069 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00078 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99878 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47029 * 59.99884 * 25 23 21 27 27 H 1.48501 * 109.47013 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47027 * 299.99717 * 25 23 21 29 29 C 1.48558 * 104.22317 * 320.50006 * 16 15 13 30 30 C 1.52995 * 117.44067 * 154.84063 * 11 10 8 31 31 H 1.09001 * 119.53048 * 354.34727 * 30 11 10 32 32 H 1.08994 * 109.47293 * 295.82196 * 1 2 3 33 33 H 1.09002 * 109.47184 * 55.83314 * 1 2 3 34 34 H 1.09005 * 109.46651 * 175.82623 * 1 2 3 35 35 H 1.09001 * 109.47446 * 191.25009 * 3 2 1 36 36 H 1.09002 * 109.47031 * 311.24867 * 3 2 1 37 37 H 1.08996 * 109.46983 * 71.25035 * 3 2 1 38 38 H 1.09002 * 113.61150 * 156.32988 * 4 2 1 39 39 H 1.09005 * 113.61538 * 25.43557 * 4 2 1 40 40 H 1.09000 * 113.61415 * 220.01657 * 5 4 2 41 41 H 1.09000 * 113.69037 * 89.13420 * 5 4 2 42 42 H 0.97002 * 119.99963 * 0.02562 * 10 8 6 43 43 H 1.09003 * 110.45012 * 328.56625 * 15 13 11 44 44 H 1.09004 * 110.42619 * 206.08292 * 15 13 11 45 45 H 1.09006 * 109.47412 * 45.41783 * 17 16 15 46 46 H 1.09004 * 109.47191 * 165.41560 * 17 16 15 47 47 H 0.97006 * 120.00195 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99815 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.41393 * 280.71039 * 29 16 15 50 50 H 1.08996 * 110.41120 * 158.26468 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 6 2.0930 -2.0425 0.0000 6 6 2.1460 -0.9291 1.0593 7 1 3.1591 -0.6498 1.3489 8 6 1.2468 -1.1783 2.2427 9 8 0.5574 -0.2814 2.6800 10 7 1.2086 -2.3979 2.8149 11 6 0.3348 -2.6401 3.9657 12 1 -0.3667 -1.8393 4.1992 13 6 0.9163 -3.4326 5.1381 14 1 1.9644 -3.7314 5.1174 15 6 0.2181 -3.3181 6.5108 16 7 -0.8376 -4.3628 6.4804 17 6 -1.8898 -4.0768 7.4648 18 6 -1.3804 -4.3864 8.8489 19 8 -0.2517 -4.8038 9.0004 20 7 -2.1786 -4.1985 9.9184 21 6 -1.7150 -4.4797 11.1776 22 1 -0.7103 -4.8521 11.3125 23 6 -2.5382 -4.2865 12.2803 24 7 -3.7609 -3.8338 12.1162 25 14 -1.9067 -4.6703 13.9960 26 1 -0.7168 -3.8301 14.2849 27 1 -2.9706 -4.3817 14.9910 28 1 -1.5310 -6.1047 14.0757 29 6 -1.3728 -4.3008 5.0959 30 6 -0.1297 -4.0775 4.2081 31 1 0.1177 -4.8518 3.4818 32 1 -0.3633 0.4476 0.9250 33 1 -0.3634 0.5771 -0.8503 34 1 -0.3633 -1.0250 -0.0748 35 1 3.1954 1.3518 -0.2005 36 1 1.6428 2.0077 -0.7727 37 1 1.9627 1.8725 0.9731 38 1 3.1591 -0.6498 -1.3490 39 1 1.4946 -1.1086 -1.9146 40 1 2.9718 -2.6874 0.0000 41 1 1.1576 -2.6019 0.0009 42 1 1.7602 -3.1152 2.4654 43 1 -0.2276 -2.3305 6.6302 44 1 0.9261 -3.5165 7.3155 45 1 -2.1657 -3.0239 7.4063 46 1 -2.7632 -4.6935 7.2527 47 1 -3.0810 -3.8636 9.7974 48 1 -4.3356 -3.6993 12.8859 49 1 -2.0675 -3.4670 4.9939 50 1 -1.8627 -5.2389 4.8353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114711792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:15 Heat of formation + Delta-G solvation = -38.531642 kcal Electronic energy + Delta-G solvation = -28593.009590 eV Core-core repulsion = 24620.718093 eV Total energy + Delta-G solvation = -3972.291497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89416 -41.09481 -39.84860 -38.83553 -36.37474 -35.78602 -33.79257 -33.22119 -31.49440 -29.45742 -29.24108 -28.34975 -27.78481 -26.44562 -23.79522 -23.47062 -22.02198 -21.77849 -21.34306 -20.91530 -19.87188 -19.34762 -18.11886 -17.90153 -17.61394 -16.65933 -16.50384 -16.40644 -16.18032 -15.83246 -15.53618 -15.44490 -14.95212 -14.84379 -14.78208 -14.19316 -14.08939 -13.94636 -13.81438 -13.55128 -13.36282 -13.16027 -13.13864 -12.95194 -12.83949 -12.54017 -12.51638 -12.44059 -12.42149 -12.25044 -12.12774 -11.88695 -11.74641 -11.48948 -11.30565 -11.14006 -10.98460 -10.53866 -10.33618 -10.01726 -9.78871 -9.39996 -8.46726 -5.95603 1.39237 1.40603 1.51871 1.54142 1.92032 2.04795 2.28179 2.64138 2.81506 3.19581 3.35817 3.39817 3.53636 3.58121 3.65218 3.71772 3.81589 3.84474 4.04730 4.07336 4.23808 4.27747 4.30201 4.38664 4.48271 4.51329 4.57235 4.60403 4.70415 4.78196 4.79412 4.84055 4.89385 4.92561 4.98800 5.05949 5.09186 5.11086 5.13568 5.25334 5.29412 5.40013 5.45258 5.51569 5.57360 5.78486 5.84872 6.05838 6.51631 6.60216 7.12395 7.23722 7.55711 8.11781 8.70552 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.001799 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.759738 B =15556.469775 C =15759.133719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.126 4.126 6 C -0.129 4.129 7 H 0.133 0.867 8 C 0.524 3.476 9 O -0.577 6.577 10 N -0.685 5.685 11 C 0.113 3.887 12 H 0.110 0.890 13 C -0.170 4.170 14 H 0.128 0.872 15 C 0.068 3.932 16 N -0.504 5.504 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.057 3.943 30 C -0.145 4.145 31 H 0.148 0.852 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.418 0.582 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.053 0.947 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 4.704 -30.098 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.193 4.193 4 C -0.160 4.160 5 C -0.163 4.163 6 C -0.149 4.149 7 H 0.151 0.849 8 C 0.313 3.687 9 O -0.456 6.456 10 N -0.335 5.335 11 C 0.006 3.994 12 H 0.128 0.872 13 C -0.191 4.191 14 H 0.146 0.854 15 C -0.060 4.060 16 N -0.228 5.228 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.070 4.070 30 C -0.165 4.165 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.256 0.744 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.805 4.575 -29.422 31.348 hybrid contribution -0.572 0.610 1.240 1.496 sum 9.233 5.186 -28.182 30.106 Atomic orbital electron populations 1.21694 0.93887 1.01600 1.01995 1.21760 0.95332 0.94950 0.95062 1.21736 1.01140 0.95164 1.01287 1.23002 1.02036 0.94660 0.96289 1.22926 1.03891 0.95808 0.93668 1.23074 0.99818 1.00988 0.91053 0.84889 1.21174 0.82347 0.81274 0.83876 1.90672 1.45176 1.44778 1.64973 1.45249 1.44214 1.13365 1.30713 1.21506 0.95739 0.94715 0.87461 0.87202 1.23831 0.99461 1.06210 0.89581 0.85384 1.22511 0.94604 0.92384 0.96520 1.65239 1.09323 1.45184 1.03049 1.21919 0.95566 1.01326 0.89760 1.20718 0.86329 0.83059 0.86974 1.90477 1.21416 1.51389 1.86841 1.41927 1.15309 1.58603 1.05430 1.19624 1.00080 1.42985 0.83600 0.90331 1.26058 0.95391 0.96480 1.03464 1.69670 1.07639 1.45594 1.33288 0.84979 0.77884 0.78817 0.76584 1.19774 1.19430 1.19639 1.22776 0.95291 1.02680 0.86219 1.23864 0.95672 0.96058 1.00933 0.83431 0.93175 0.91657 0.92928 0.90954 0.91982 0.94176 0.88188 0.90418 0.88252 0.89708 0.74448 0.94608 0.91661 0.91505 0.86768 0.77060 0.91308 0.92865 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.01 71.98 0.58 -1.62 16 2 C -0.07 -0.90 1.19 -51.66 -0.06 -0.96 16 3 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 4 C -0.12 -0.87 7.22 31.12 0.22 -0.64 16 5 C -0.13 -0.83 6.71 31.12 0.21 -0.63 16 6 C -0.13 -1.56 3.70 -11.02 -0.04 -1.60 16 7 H 0.13 1.29 8.10 -2.38 -0.02 1.27 16 8 C 0.52 10.28 6.55 87.66 0.57 10.85 16 9 O -0.58 -16.77 14.16 -3.03 -0.04 -16.81 16 10 N -0.69 -11.05 5.46 -442.54 -2.41 -13.46 16 11 C 0.11 2.41 5.98 44.99 0.27 2.68 16 12 H 0.11 2.93 7.40 -2.39 -0.02 2.92 16 13 C -0.17 -4.14 7.04 -9.93 -0.07 -4.21 16 14 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 15 C 0.07 2.25 5.73 86.47 0.50 2.75 16 16 N -0.50 -16.84 4.98 -885.92 -4.41 -21.25 16 17 C 0.05 1.66 5.32 85.56 0.45 2.11 16 18 C 0.44 21.81 7.63 87.66 0.67 22.48 16 19 O -0.62 -35.08 14.80 -3.07 -0.05 -35.13 16 20 N -0.58 -30.40 5.29 -306.98 -1.62 -32.02 16 21 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.65 13.05 21.66 0.28 -50.36 16 25 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 C 0.06 1.36 6.26 86.45 0.54 1.90 16 30 C -0.15 -2.86 7.04 -9.95 -0.07 -2.93 16 31 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.15 6.18 -2.39 -0.01 1.14 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.82 7.31 -2.38 -0.02 0.80 16 35 H 0.07 0.66 7.94 -2.39 -0.02 0.64 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 0.45 7.96 -2.39 -0.02 0.43 16 39 H 0.08 0.52 8.10 -2.38 -0.02 0.50 16 40 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.08 0.63 7.56 -2.39 -0.02 0.62 16 42 H 0.42 4.02 8.37 -92.71 -0.78 3.24 16 43 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 44 H 0.06 2.63 7.24 -2.38 -0.02 2.61 16 45 H 0.07 2.22 7.77 -2.38 -0.02 2.21 16 46 H 0.11 3.58 8.08 -2.38 -0.02 3.56 16 47 H 0.40 19.86 7.90 -92.70 -0.73 19.13 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.05 1.20 8.00 -2.39 -0.02 1.18 16 50 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.31 399.46 -1.06 -76.37 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.55 Total: 36.61 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.71 Total: 10.27 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -8.16 Total: -117.09 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.09 Total: -51.94 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.31 -1.06 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114711792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds